CA2139070A1 - Method for enhancing detection ability of nucleic acid assays employing polymerase chain reaction - Google Patents
Method for enhancing detection ability of nucleic acid assays employing polymerase chain reactionInfo
- Publication number
- CA2139070A1 CA2139070A1 CA002139070A CA2139070A CA2139070A1 CA 2139070 A1 CA2139070 A1 CA 2139070A1 CA 002139070 A CA002139070 A CA 002139070A CA 2139070 A CA2139070 A CA 2139070A CA 2139070 A1 CA2139070 A1 CA 2139070A1
- Authority
- CA
- Canada
- Prior art keywords
- rna
- dna
- nucleic acid
- pcr
- detection
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6804—Nucleic acid analysis using immunogens
Abstract
This invention relates to a new and novel method for significantly enhancing the sensitivity of assays aimed at detecting the presence of target deoxyribonucleic acid (DNA) or ribonucleic acid (RNA) sequences in a sample. Specifically, this method applies to techniques that employ polymerase chain reactions (PCR?) or other nucleic amplificatio techniques to amplify copies of the target DNA or RNA (via reverse-transclil,tase followed by PCR, Murakawa et ah 1988 DNA 7-287) to allow for detection. The method of thepresent invention combines the following four steps for the first time: DNA amplicon synthesis and amplification in a modified PCR using a target nucleic acid sequence as a template; amplicon transcription into RNA and amplification; RNA:DNA hybrid formation;
and immunochemical detection of heteroduplex nucleic acid sequences. This method extends the standard PCR techniques to accommodate amplification of copies of the PCR product and transcription into RNA, which, following binding to DNA sequences facilitates immunochemical detection of the RNA:DNA hybrids thereby formed. This combination of steps results in a new assay with increased simplicity, speed and sensitivity, including a greatly improved signal-to-noise ratio, over standard nucleic acid detection methods. This improved method will be extremely useful for performing analyses in the foiensic, clinical, agricultural and biological fields.
and immunochemical detection of heteroduplex nucleic acid sequences. This method extends the standard PCR techniques to accommodate amplification of copies of the PCR product and transcription into RNA, which, following binding to DNA sequences facilitates immunochemical detection of the RNA:DNA hybrids thereby formed. This combination of steps results in a new assay with increased simplicity, speed and sensitivity, including a greatly improved signal-to-noise ratio, over standard nucleic acid detection methods. This improved method will be extremely useful for performing analyses in the foiensic, clinical, agricultural and biological fields.
Claims (6)
1. A method of nucleic acid sequence detection comprising the steps:
a) DNA amplicon synthesis utilizing polymerase chain reaction technique and priming oligonucleotides to which an appropriate RNA polymerase promoter has been appended;
b) transcription of amplicons into RNA sequences using an RNA polymerase;
c) formation of RNA:DNA hybrids; and d) immunochemical detection of RNA:DNA hybrids using procedures comprising antibodies directed to RNA:DNA hybrids.
a) DNA amplicon synthesis utilizing polymerase chain reaction technique and priming oligonucleotides to which an appropriate RNA polymerase promoter has been appended;
b) transcription of amplicons into RNA sequences using an RNA polymerase;
c) formation of RNA:DNA hybrids; and d) immunochemical detection of RNA:DNA hybrids using procedures comprising antibodies directed to RNA:DNA hybrids.
2. A method as claimed in claim 1, wherein amplicon transcription into RNA is performed in such a manner as to significantly amplify the number of copies of the amplicons.
3. A method as claimed in claim 1 or 2, wherein the DNA amplicon synthesis contains an RNA polymerase promoter sequence.
4. A method as claimed in claim 1 or 2, wherein the DNA amplicon synthesis contains the RNA polymerase promoter T7.
5. A method as claimed in claims 1 through 4, wherein the RNA:DNA hybrid formation has one of the nucleic acid sequences attached to a solid support.
6. A method as claimed in claims 1 through 5, wherein the immunochemical detection is performed by a monoclonal or polyclonal antibody that recognizes the target RNA:DNA hybrid.
Priority Applications (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CA2139070A CA2139070C (en) | 1994-12-23 | 1994-12-23 | Method for enhancing detection ability of nucleic acid assays employing polymerase chain reaction |
US08/718,596 US5827661A (en) | 1994-12-23 | 1996-09-23 | Enhancing detection polymerase chain reaction assays by RNA transcription and immunodetection of RNA:DNA hybrids |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CA2139070A CA2139070C (en) | 1994-12-23 | 1994-12-23 | Method for enhancing detection ability of nucleic acid assays employing polymerase chain reaction |
Publications (2)
Publication Number | Publication Date |
---|---|
CA2139070A1 true CA2139070A1 (en) | 1996-06-24 |
CA2139070C CA2139070C (en) | 2010-03-30 |
Family
ID=4154924
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CA2139070A Expired - Fee Related CA2139070C (en) | 1994-12-23 | 1994-12-23 | Method for enhancing detection ability of nucleic acid assays employing polymerase chain reaction |
Country Status (2)
Country | Link |
---|---|
US (1) | US5827661A (en) |
CA (1) | CA2139070C (en) |
Families Citing this family (30)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
ES2246546T3 (en) * | 1997-12-12 | 2006-02-16 | Digene Corporation | ASSESSMENT OF DISEASES RELATED TO THE HUMAN PAPILOMA VIRUS. |
US7399589B2 (en) * | 1998-02-06 | 2008-07-15 | Digene Corporation | Immunological detection of RNA:DNA hybrids on microarrays |
US6686151B1 (en) | 1998-02-06 | 2004-02-03 | Digene Corporation | Immunological detection of RNA:DNA hybrids on microarrays |
US6087112A (en) * | 1998-12-30 | 2000-07-11 | Oligos Etc. Inc. | Arrays with modified oligonucleotide and polynucleotide compositions |
US20030180789A1 (en) * | 1998-12-30 | 2003-09-25 | Dale Roderic M.K. | Arrays with modified oligonucleotide and polynucleotide compositions |
US6232068B1 (en) * | 1999-01-22 | 2001-05-15 | Rosetta Inpharmatics, Inc. | Monitoring of gene expression by detecting hybridization to nucleic acid arrays using anti-heteronucleic acid antibodies |
JP2002535015A (en) * | 1999-01-29 | 2002-10-22 | エイブイアイ バイオファーマ, インコーポレイテッド | Non-invasive method for detecting target RNA |
US6271002B1 (en) | 1999-10-04 | 2001-08-07 | Rosetta Inpharmatics, Inc. | RNA amplification method |
US7439016B1 (en) | 2000-06-15 | 2008-10-21 | Digene Corporation | Detection of nucleic acids by type-specific hybrid capture method |
US7601497B2 (en) | 2000-06-15 | 2009-10-13 | Qiagen Gaithersburg, Inc. | Detection of nucleic acids by target-specific hybrid capture method |
NZ530343A (en) * | 2001-06-22 | 2007-01-26 | Marshfield Clinic | Methods and oligonucleotides for the detection of E. coli 0157:H7 |
US7015317B2 (en) * | 2002-05-02 | 2006-03-21 | Abbott Laboratories | Polynucleotides for the detection and quantification of hepatitis B virus nucleic acids |
CA2559401A1 (en) * | 2003-12-24 | 2005-07-07 | Advanomics Corp. | Direct identification and mapping of rna transcripts |
US20060240442A1 (en) * | 2005-04-20 | 2006-10-26 | Vevea Dirk N | Methods and oligonucleotides for the detection of Salmonella SP., E coli 0157:H7, and Listeria monocytogenes |
US20060246463A1 (en) * | 2005-04-20 | 2006-11-02 | Vevea Dirk N | Methods and oligonucleotides for the detection of Salmonella SP., E coli 0157:H7, and Listeria monocytogenes |
AU2006247597B2 (en) * | 2005-05-13 | 2010-02-11 | Bio-Rad Laboratories, Inc. | Identifying statistically linear data |
CA2613442C (en) * | 2005-06-30 | 2016-08-23 | Archemix Corp. | Materials and methods for the generation of fully 2'-modified nucleic acid transcripts |
US8101385B2 (en) | 2005-06-30 | 2012-01-24 | Archemix Corp. | Materials and methods for the generation of transcripts comprising modified nucleotides |
EP2759307B1 (en) | 2006-03-29 | 2016-11-09 | Merial Limited | Vaccine against Streptococci |
US20080076121A1 (en) * | 2006-09-22 | 2008-03-27 | Paul Kenneth Wolber | Microarray nuclease protection assay |
CA2673029C (en) * | 2006-12-22 | 2017-03-28 | Archemix Corp. | Materials and methods for the generation of transcripts comprising modified nucleotides |
US8288520B2 (en) * | 2008-10-27 | 2012-10-16 | Qiagen Gaithersburg, Inc. | Fast results hybrid capture assay and system |
ES2644516T3 (en) * | 2009-01-28 | 2017-11-29 | Qiagen Gaithersburg, Inc. | Method and test for sample preparation of large sequence specific volume |
US9797000B2 (en) | 2009-05-01 | 2017-10-24 | Qiagen Gaithersburg Inc. | Non-target amplification method for detection of RNA splice-forms in a sample |
EP2478087B1 (en) | 2009-09-14 | 2017-01-18 | QIAGEN Gaithersburg, Inc. | Compositions and methods for recovery of nucleic acids or proteins from tissue samples fixed in cytology media |
CN102822189B (en) * | 2010-01-29 | 2016-06-29 | 奇亚根盖瑟斯堡股份有限公司 | The method and composition of (multiplex analysis) is analyzed for the sequence-specific purification of nucleic acid and MULTIPLE COMPOSITE body |
JP2013517803A (en) | 2010-01-29 | 2013-05-20 | キアジェン ゲイサーズバーグ インコーポレイテッド | Method for determining and confirming the presence of HPV in a sample |
JP2013528049A (en) | 2010-05-19 | 2013-07-08 | キアゲン ガイサーズバーグ アイエヌシー. | Methods and compositions for sequence-specific purification and multiplex analysis of nucleic acids |
US9885092B2 (en) | 2011-02-24 | 2018-02-06 | Qiagen Gaithersburg Inc. | Materials and methods for detection of HPV nucleic acids |
CN102676506A (en) * | 2012-05-30 | 2012-09-19 | 曹际娟 | Mononuclear cell proliferation listeria monocytogenes nucleic acid standard sample and establishing method and application thereof |
Family Cites Families (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
ZA853756B (en) * | 1984-06-01 | 1986-01-29 | Miles Lab | Nucleic acid hybridization assay employing immobilized rna probes |
US4683202A (en) * | 1985-03-28 | 1987-07-28 | Cetus Corporation | Process for amplifying nucleic acid sequences |
US4683105A (en) * | 1985-10-31 | 1987-07-28 | Westinghouse Electric Corp. | Testable, fault-tolerant power interface circuit for normally de-energized loads |
CA1340807C (en) * | 1988-02-24 | 1999-11-02 | Lawrence T. Malek | Nucleic acid amplification process |
US5130238A (en) * | 1988-06-24 | 1992-07-14 | Cangene Corporation | Enhanced nucleic acid amplification process |
CA2020958C (en) * | 1989-07-11 | 2005-01-11 | Daniel L. Kacian | Nucleic acid sequence amplification methods |
US5215899A (en) * | 1989-11-09 | 1993-06-01 | Miles Inc. | Nucleic acid amplification employing ligatable hairpin probe and transcription |
US5166051A (en) * | 1990-08-08 | 1992-11-24 | Genesis Labs, Inc. | Membranes, membrane overlays for exclusion of erythrocytes, and method for immunoassay of whole blood analytes |
-
1994
- 1994-12-23 CA CA2139070A patent/CA2139070C/en not_active Expired - Fee Related
-
1996
- 1996-09-23 US US08/718,596 patent/US5827661A/en not_active Expired - Fee Related
Also Published As
Publication number | Publication date |
---|---|
US5827661A (en) | 1998-10-27 |
CA2139070C (en) | 2010-03-30 |
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Legal Events
Date | Code | Title | Description |
---|---|---|---|
EEER | Examination request | ||
MKLA | Lapsed |
Effective date: 20131224 |