CA2258512A1 - Amidases, nucleic acids encoding them and methods for making and using them - Google Patents

Amidases, nucleic acids encoding them and methods for making and using them

Info

Publication number
CA2258512A1
CA2258512A1 CA002258512A CA2258512A CA2258512A1 CA 2258512 A1 CA2258512 A1 CA 2258512A1 CA 002258512 A CA002258512 A CA 002258512A CA 2258512 A CA2258512 A CA 2258512A CA 2258512 A1 CA2258512 A1 CA 2258512A1
Authority
CA
Canada
Prior art keywords
enzyme
methods
amidases
making
nucleic acids
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
CA002258512A
Other languages
French (fr)
Other versions
CA2258512C (en
Inventor
Dennis Murphy
John C. Reid
Dan Robertson
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
BASF Enzymes LLC
Original Assignee
Diversa Corporation
Dennis Murphy
John C. Reid
Dan Robertson
Recombinant Biocatalysis, Inc.
Verenium Corporation
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Diversa Corporation, Dennis Murphy, John C. Reid, Dan Robertson, Recombinant Biocatalysis, Inc., Verenium Corporation filed Critical Diversa Corporation
Publication of CA2258512A1 publication Critical patent/CA2258512A1/en
Application granted granted Critical
Publication of CA2258512C publication Critical patent/CA2258512C/en
Anticipated expiration legal-status Critical
Expired - Fee Related legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P21/00—Preparation of peptides or proteins
    • C12P21/06—Preparation of peptides or proteins produced by the hydrolysis of a peptide bond, e.g. hydrolysate products
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14—Hydrolases (3)
    • C12N9/78—Hydrolases (3) acting on carbon to nitrogen bonds other than peptide bonds (3.5)
    • C12N9/80—Hydrolases (3) acting on carbon to nitrogen bonds other than peptide bonds (3.5) acting on amide bonds in linear amides (3.5.1)

Abstract

A purified thermostable enzyme is derived from the archael bacterium Thermococcus GU5L5. The enzyme has a molecular weight of about 68.5 kilodaltons and has cellulase activity. The enzyme can be produced from native or recombinant host cells and can be used for the removal of arginine, phenylalanine, or methionine amino acids from the N-terminal end of peptides in peptide or peptidomimetic synthesis. The enzyme is selective for the L, or "natural" enantiomer of the amino acid derivatives and is therefore useful for the production of optically active compounds. These reactions can be performed in the presence of the chemically more reactive ester functionality, a step which is very difficult to achieve with nonenzymatic methods.
CA002258512A 1996-06-17 1997-06-17 Amidases, nucleic acids encoding them and methods for making and using them Expired - Fee Related CA2258512C (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US08/664,646 1996-06-17
US08/664,646 US5877001A (en) 1996-06-17 1996-06-17 Amidase
PCT/US1997/009319 WO1997048794A1 (en) 1996-06-17 1997-06-17 Amidase

Publications (2)

Publication Number Publication Date
CA2258512A1 true CA2258512A1 (en) 1997-12-24
CA2258512C CA2258512C (en) 2009-01-20

Family

ID=24666850

Family Applications (1)

Application Number Title Priority Date Filing Date
CA002258512A Expired - Fee Related CA2258512C (en) 1996-06-17 1997-06-17 Amidases, nucleic acids encoding them and methods for making and using them

Country Status (9)

Country Link
US (8) US5877001A (en)
EP (1) EP0937139B1 (en)
JP (1) JP4306802B2 (en)
AT (1) ATE275205T1 (en)
AU (1) AU723433B2 (en)
CA (1) CA2258512C (en)
DE (1) DE69730514T2 (en)
ES (1) ES2227701T3 (en)
WO (1) WO1997048794A1 (en)

Families Citing this family (54)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5605793A (en) 1994-02-17 1997-02-25 Affymax Technologies N.V. Methods for in vitro recombination
US6309883B1 (en) 1994-02-17 2001-10-30 Maxygen, Inc. Methods and compositions for cellular and metabolic engineering
US20020137185A1 (en) * 1996-06-17 2002-09-26 Jay Short Enzymes having amidase activity and methods of use thereof
US5877001A (en) * 1996-06-17 1999-03-02 Diverso Corporation Amidase
KR100570935B1 (en) 1997-01-17 2006-04-13 맥시겐, 인크. Evolution of whole cells and organisms by recursive sequence recombination
US6326204B1 (en) 1997-01-17 2001-12-04 Maxygen, Inc. Evolution of whole cells and organisms by recursive sequence recombination
US7148054B2 (en) * 1997-01-17 2006-12-12 Maxygen, Inc. Evolution of whole cells and organisms by recursive sequence recombination
US6723550B1 (en) * 1997-07-15 2004-04-20 Genencor International, Inc. Proteases from gram-positive organisms
US6153352A (en) * 1997-12-10 2000-11-28 Fuji Photo Film Co., Ltd. Planographic printing plate precursor and a method for producing a planographic printing plate
US6541011B2 (en) 1998-02-11 2003-04-01 Maxygen, Inc. Antigen library immunization
US7390619B1 (en) * 1998-02-11 2008-06-24 Maxygen, Inc. Optimization of immunomodulatory properties of genetic vaccines
WO1999057128A1 (en) 1998-05-01 1999-11-11 Maxygen, Inc. Optimization of pest resistance genes using dna shuffling
US7153655B2 (en) * 1998-06-16 2006-12-26 Alligator Bioscience Ab Method for in vitro molecular evolution of protein function involving the use of exonuclease enzyme and two populations of parent polynucleotide sequence
US20060242731A1 (en) * 1998-08-12 2006-10-26 Venkiteswaran Subramanian DNA shuffling to produce herbicide selective crops
JP2002522072A (en) 1998-08-12 2002-07-23 マキシジェン， インコーポレイテッド DNA shuffling of monooxygenase gene for production of industrial chemicals.
AU6510799A (en) 1998-10-07 2000-04-26 Maxygen, Inc. Dna shuffling to produce nucleic acids for mycotoxin detoxification
WO2000028018A1 (en) 1998-11-10 2000-05-18 Maxygen, Inc. Modified adp-glucose pyrophosphorylase for improvement and optimization of plant phenotypes
US6438561B1 (en) * 1998-11-19 2002-08-20 Navigation Technologies Corp. Method and system for using real-time traffic broadcasts with navigation systems
US6917882B2 (en) 1999-01-19 2005-07-12 Maxygen, Inc. Methods for making character strings, polynucleotides and polypeptides having desired characteristics
US20030054390A1 (en) * 1999-01-19 2003-03-20 Maxygen, Inc. Oligonucleotide mediated nucleic acid recombination
EP1151409A1 (en) * 1999-01-18 2001-11-07 Maxygen, Inc. Methods of populating data stuctures for use in evolutionary simulations
US6436675B1 (en) 1999-09-28 2002-08-20 Maxygen, Inc. Use of codon-varied oligonucleotide synthesis for synthetic shuffling
US6376246B1 (en) 1999-02-05 2002-04-23 Maxygen, Inc. Oligonucleotide mediated nucleic acid recombination
US6961664B2 (en) 1999-01-19 2005-11-01 Maxygen Methods of populating data structures for use in evolutionary simulations
US20070065838A1 (en) * 1999-01-19 2007-03-22 Maxygen, Inc. Oligonucleotide mediated nucleic acid recombination
US7024312B1 (en) 1999-01-19 2006-04-04 Maxygen, Inc. Methods for making character strings, polynucleotides and polypeptides having desired characteristics
EP2253704B1 (en) 1999-01-19 2015-08-19 Codexis Mayflower Holdings, LLC Oligonucleotide mediated nucleic acid recombination
IL144657A0 (en) 1999-02-11 2002-06-30 Maxygen Inc High throughput mass spectrometry
JP3399518B2 (en) * 1999-03-03 2003-04-21 インターナショナル・ビジネス・マシーンズ・コーポレーション Semiconductor structure and method of manufacturing the same
EP1165775A2 (en) 1999-03-05 2002-01-02 Maxygen, Inc. Recombination of insertion modified nucleic acids
US6531316B1 (en) 1999-03-05 2003-03-11 Maxyag, Inc. Encryption of traits using split gene sequences and engineered genetic elements
WO2001004287A1 (en) * 1999-07-07 2001-01-18 Maxygen Aps A method for preparing modified polypeptides
US20040002474A1 (en) * 1999-10-07 2004-01-01 Maxygen Inc. IFN-alpha homologues
US7430477B2 (en) * 1999-10-12 2008-09-30 Maxygen, Inc. Methods of populating data structures for use in evolutionary simulations
US6686515B1 (en) 1999-11-23 2004-02-03 Maxygen, Inc. Homologous recombination in plants
US7115712B1 (en) * 1999-12-02 2006-10-03 Maxygen, Inc. Cytokine polypeptides
CN1301735A (en) * 1999-12-24 2001-07-04 上海博德基因开发有限公司 New polypeptide-amidase family protein 10 and polynucleotide coding such polypeptide
SG121902A1 (en) * 2000-01-11 2006-05-26 Maxygen Inc Integrated systems for diversity generation and screening
AU2001241939A1 (en) * 2000-02-28 2001-09-12 Maxygen, Inc. Single-stranded nucleic acid template-mediated recombination and nucleic acid fragment isolation
AU2001287273A1 (en) * 2000-03-24 2001-10-08 Maxygen, Inc. Methods for modulating cellular and organismal phenotypes
WO2002000897A2 (en) 2000-06-23 2002-01-03 Maxygen, Inc. Novel chimeric promoters
AU2001272978A1 (en) 2000-06-23 2002-01-08 Maxygen, Inc. Novel co-stimulatory molecules
WO2002004629A2 (en) * 2000-07-07 2002-01-17 Maxygen, Inc. Molecular breeding of transposable elements
US6858422B2 (en) 2000-07-13 2005-02-22 Codexis, Inc. Lipase genes
EP1354031A2 (en) * 2000-07-31 2003-10-22 Maxygen, Inc. Nucleotide incorporating enzymes
WO2002016583A2 (en) * 2000-08-24 2002-02-28 Maxygen, Inc. Constructs and their use in metabolic pathway engineering
US6958213B2 (en) * 2000-12-12 2005-10-25 Alligator Bioscience Ab Method for in vitro molecular evolution of protein function
US20020086292A1 (en) 2000-12-22 2002-07-04 Shigeaki Harayama Synthesis of hybrid polynucleotide molecules using single-stranded polynucleotide molecules
WO2003020929A1 (en) * 2001-08-28 2003-03-13 Mitsubishi Rayon Co., Ltd. Novel amide hydrolase gene
JP4372679B2 (en) * 2002-05-17 2009-11-25 アリゲーター・バイオサイエンス・アーベー In vitro molecular evolution of protein function
WO2006069129A1 (en) * 2004-12-22 2006-06-29 E.I. Dupont De Nemours And Company Method for the production of glycolic acid from ammonium glycolate by direct deammoniation
GB2432366B (en) * 2005-11-19 2007-11-21 Alligator Bioscience Ab A method for in vitro molecular evolution of protein function
CN103382464B (en) * 2013-07-22 2015-12-23 上海交通大学 Derive from the Ntn hydrolase of the ancient bacterium of hyperthermophilic and encoding gene thereof and application
JP7254299B2 (en) * 2017-08-30 2023-04-10 国立大学法人 東京大学 Drug-supporting thin film

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE4014564C1 (en) * 1990-05-07 1991-07-18 Forschungszentrum Juelich Gmbh, 5170 Juelich, De
CA2119188A1 (en) * 1993-04-05 1994-10-06 Patricia A. Spears Detection and identification of mycobacteria
US5451522A (en) * 1994-07-15 1995-09-19 Eli Lilly And Company Genes encoding and method of expressing an enzyme: phthalyl amidase
US5877001A (en) * 1996-06-17 1999-03-02 Diverso Corporation Amidase

Also Published As

Publication number Publication date
US5877001A (en) 1999-03-02
WO1997048794A1 (en) 1997-12-24
AU3372897A (en) 1998-01-07
EP0937139B1 (en) 2004-09-01
US6004796A (en) 1999-12-21
JP4306802B2 (en) 2009-08-05
US6429004B1 (en) 2002-08-06
ATE275205T1 (en) 2004-09-15
US6136583A (en) 2000-10-24
EP0937139A4 (en) 2000-08-02
AU723433B2 (en) 2000-08-24
US6525190B1 (en) 2003-02-25
US5985646A (en) 1999-11-16
ES2227701T3 (en) 2005-04-01
CA2258512C (en) 2009-01-20
US6500659B1 (en) 2002-12-31
JP2000512849A (en) 2000-10-03
US6465204B1 (en) 2002-10-15
DE69730514T2 (en) 2005-09-01
EP0937139A1 (en) 1999-08-25
DE69730514D1 (en) 2004-10-07

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Effective date: 20130618