CA2416757A1 - Prodrugs of phosphonate nucleotide analogues and methods for selecting and making same - Google Patents
Prodrugs of phosphonate nucleotide analogues and methods for selecting and making same Download PDFInfo
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- CA2416757A1 CA2416757A1 CA002416757A CA2416757A CA2416757A1 CA 2416757 A1 CA2416757 A1 CA 2416757A1 CA 002416757 A CA002416757 A CA 002416757A CA 2416757 A CA2416757 A CA 2416757A CA 2416757 A1 CA2416757 A1 CA 2416757A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H19/00—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
- C07H19/02—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
- C07H19/04—Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
- C07H19/06—Pyrimidine radicals
- C07H19/10—Pyrimidine radicals with the saccharide radical esterified by phosphoric or polyphosphoric acids
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P1/00—Drugs for disorders of the alimentary tract or the digestive system
- A61P1/16—Drugs for disorders of the alimentary tract or the digestive system for liver or gallbladder disorders, e.g. hepatoprotective agents, cholagogues, litholytics
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/12—Antivirals
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/12—Antivirals
- A61P31/14—Antivirals for RNA viruses
- A61P31/18—Antivirals for RNA viruses for HIV
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/12—Antivirals
- A61P31/20—Antivirals for DNA viruses
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07F—ACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
- C07F9/00—Compounds containing elements of Groups 5 or 15 of the Periodic System
- C07F9/02—Phosphorus compounds
- C07F9/547—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom
- C07F9/6561—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing systems of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring or ring system, with or without other non-condensed hetero rings
- C07F9/65616—Heterocyclic compounds, e.g. containing phosphorus as a ring hetero atom containing systems of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring or ring system, with or without other non-condensed hetero rings containing the ring system having three or more than three double bonds between ring members or between ring members and non-ring members, e.g. purine or analogs
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H19/00—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof
- C07H19/02—Compounds containing a hetero ring sharing one ring hetero atom with a saccharide radical; Nucleosides; Mononucleotides; Anhydro-derivatives thereof sharing nitrogen
- C07H19/04—Heterocyclic radicals containing only nitrogen atoms as ring hetero atom
- C07H19/16—Purine radicals
- C07H19/20—Purine radicals with the saccharide radical esterified by phosphoric or polyphosphoric acids
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/02—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
- C12Q1/18—Testing for antimicrobial activity of a material
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/5005—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells
- G01N33/5008—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells for testing or evaluating the effect of chemical or biological compounds, e.g. drugs, cosmetics
- G01N33/5011—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells for testing or evaluating the effect of chemical or biological compounds, e.g. drugs, cosmetics for testing antineoplastic activity
Abstract
A novel method is provided for screening prodrugs of methoxyphosphonate nucleotide analogues to identify prodrugs selectively targeting desired tissues with antiviral or antitumor activity. This method has led to the identification of novel mixed ester-amidates of PMPA for retroviral or hepadnaviral therapy, including compounds of structure (5a) having substituent groups as defined herein. Compositions of these novel compounds in pharmaceutically acceptable excipients and their use in therapy and prophylaxis are provided. Also provided is an improved method for the use of magnesium alkoxide for the preparation of starting materials and compounds for use herein.
Claims (12)
1. A compound having the structure (1):
where Ra is H or methyl, and chirally enriched compositions thereof, salts, their free base and solvates thereof.
where Ra is H or methyl, and chirally enriched compositions thereof, salts, their free base and solvates thereof.
2. A compound having the structure (2):
and its enriched diasteromers, salts, free base and solvates.
and its enriched diasteromers, salts, free base and solvates.
3. A diastereomerically enriched compound having the structure (3):
which is substantially free of the diastereomer (4):
wherein R1 is an oxyester which is hydrolyzable in vivo or, hydroxyl;
B is a heterocyclic base;
R2 is hydroxyl, or the residue of an amino acid bonded to the P atom through an amino group of the amino acid and having each carboxy substituent of the amino acid optionally esterified, but not both of R1 and R2 are hydroxyl;
E is -(CH2)2-, -CH(CH3)CH2-, -CH(CH2F)CH2-, -CH(CH2OH)CH2-, -CH(CH=CH2)CH2-, -CH(C.ident.CH)CH2-, -CH(CH2N3)CH2-, -CH(R6)OCH(R6')-, -CH(R9)CH2O- or -CH(R8)O-, wherein the right hand bond is linked to the heterocyclic base;
the broken line represents an optional double bond;
R4 and R5 are independently hydrogen, hydroxyl, halo, amino or a subtitutent having 1-5 carbon atoms selected from acyloxy, alkyoxy, alkylthio, alkylamino and dialkylamino;
R6 and R6' are independently H, C1-C6 alkyl, C1-C6 hydroxyalkyl, or C2-C7 alkanoyl;
R7 is independently H, C1-C6 alkyl, or are taken together to form -O- or -CH2-;
R8 is H, C1-C6 alkyl, C1-C6 hydroxyalkyl or C1-C6 haloalkyl; and R9 is H, hydroxymethyl or acyloxymethyl;
and their salts, free base, and solvates.
which is substantially free of the diastereomer (4):
wherein R1 is an oxyester which is hydrolyzable in vivo or, hydroxyl;
B is a heterocyclic base;
R2 is hydroxyl, or the residue of an amino acid bonded to the P atom through an amino group of the amino acid and having each carboxy substituent of the amino acid optionally esterified, but not both of R1 and R2 are hydroxyl;
E is -(CH2)2-, -CH(CH3)CH2-, -CH(CH2F)CH2-, -CH(CH2OH)CH2-, -CH(CH=CH2)CH2-, -CH(C.ident.CH)CH2-, -CH(CH2N3)CH2-, -CH(R6)OCH(R6')-, -CH(R9)CH2O- or -CH(R8)O-, wherein the right hand bond is linked to the heterocyclic base;
the broken line represents an optional double bond;
R4 and R5 are independently hydrogen, hydroxyl, halo, amino or a subtitutent having 1-5 carbon atoms selected from acyloxy, alkyoxy, alkylthio, alkylamino and dialkylamino;
R6 and R6' are independently H, C1-C6 alkyl, C1-C6 hydroxyalkyl, or C2-C7 alkanoyl;
R7 is independently H, C1-C6 alkyl, or are taken together to form -O- or -CH2-;
R8 is H, C1-C6 alkyl, C1-C6 hydroxyalkyl or C1-C6 haloalkyl; and R9 is H, hydroxymethyl or acyloxymethyl;
and their salts, free base, and solvates.
4. A diastereomerically enriched compound having the structure (5a):
which is substantially free of diastereomer (5b) wherein R5 is methyl or hydrogen;
R6 independently is H, alkyly alkenyl, alkynyl, aryl or arylalkyl, or R6 independently is alkyl, alkenyl, alkynyl, aryl or arylalkyl which is substituted with from 1 to 3 substituents selected from alkylamino, alkylaminoalkyl, dialkylaminoalkyl, dialkylamino, hydroxyl, oxo, halo, amino, alkylthio, alkoxy, alkoxyalkyl, aryloxy, aryloxyalkyl, arylalkoxy, arylalkoxyalkyl, haloalkyl, nitro, nitroalkyl, azido, azidoalkyl, alkylacyl, alkylacylalkyl, carboxyl, or alkylacylamino;
R7 is the side chain of any naturally-occuring or pharmaceutically acceptable amino acid and which, if the side chain comprises carboxyl, the carboxyl group is optionally esterified with an alkyl or aryl group;
R11 is amino, alkylamino, oxo, or dialkylamino; and R12 is amino or H;
and it salts, tautomers, free base and solvates.
which is substantially free of diastereomer (5b) wherein R5 is methyl or hydrogen;
R6 independently is H, alkyly alkenyl, alkynyl, aryl or arylalkyl, or R6 independently is alkyl, alkenyl, alkynyl, aryl or arylalkyl which is substituted with from 1 to 3 substituents selected from alkylamino, alkylaminoalkyl, dialkylaminoalkyl, dialkylamino, hydroxyl, oxo, halo, amino, alkylthio, alkoxy, alkoxyalkyl, aryloxy, aryloxyalkyl, arylalkoxy, arylalkoxyalkyl, haloalkyl, nitro, nitroalkyl, azido, azidoalkyl, alkylacyl, alkylacylalkyl, carboxyl, or alkylacylamino;
R7 is the side chain of any naturally-occuring or pharmaceutically acceptable amino acid and which, if the side chain comprises carboxyl, the carboxyl group is optionally esterified with an alkyl or aryl group;
R11 is amino, alkylamino, oxo, or dialkylamino; and R12 is amino or H;
and it salts, tautomers, free base and solvates.
5. A compound of structure (6):
and its salts and solvates.
and its salts and solvates.
6. A diastereomerically enriched compound of structure (6a):
which is substantially free of diastereomer (6b):
which is substantially free of diastereomer (6b):
7. A compound of structure (7):
8. A diastereomerically enriched compound of structure (7a):
which is substantially free of diastereomer (7b)
which is substantially free of diastereomer (7b)
9. A composition comprising a compound of any one of claims 1 to 8 and a pharmaceutically effective excipient.
10. The composition of claim 9, wherein the excipient is a gel.
11. The composition of claim 9, which is suitable for topical administration.
12. Use of a compound of any one of claims 1 to 8 in a therapeutically or prophylactically effective amount for antiviral therapy or prophylaxis in a subject in need of such therapy or prophylaxis.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CA2725819A CA2725819C (en) | 2000-07-21 | 2001-07-20 | Prodrugs of phosphonate nucleotide analogues and methods for selecting and making same |
Applications Claiming Priority (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US22002100P | 2000-07-21 | 2000-07-21 | |
US60/220,021(CIP) | 2000-07-21 | ||
US60/220,021 | 2000-07-21 | ||
PCT/US2001/023104 WO2002008241A2 (en) | 2000-07-21 | 2001-07-20 | Prodrugs of phosphonate nucleotide analogues and methods for selecting and making same |
Related Child Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CA2725819A Division CA2725819C (en) | 2000-07-21 | 2001-07-20 | Prodrugs of phosphonate nucleotide analogues and methods for selecting and making same |
Publications (2)
Publication Number | Publication Date |
---|---|
CA2416757A1 true CA2416757A1 (en) | 2002-01-31 |
CA2416757C CA2416757C (en) | 2011-02-15 |
Family
ID=22821718
Family Applications (3)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CA2725819A Expired - Lifetime CA2725819C (en) | 2000-07-21 | 2001-07-20 | Prodrugs of phosphonate nucleotide analogues and methods for selecting and making same |
CA2416757A Expired - Lifetime CA2416757C (en) | 2000-07-21 | 2001-07-20 | Prodrugs of phosphonate nucleotide analogues and methods for selecting and making same |
CA2893174A Abandoned CA2893174A1 (en) | 2000-07-21 | 2001-07-20 | Prodrugs of phosphonate nucleotide analogues and methods for selecting and making same |
Family Applications Before (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CA2725819A Expired - Lifetime CA2725819C (en) | 2000-07-21 | 2001-07-20 | Prodrugs of phosphonate nucleotide analogues and methods for selecting and making same |
Family Applications After (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CA2893174A Abandoned CA2893174A1 (en) | 2000-07-21 | 2001-07-20 | Prodrugs of phosphonate nucleotide analogues and methods for selecting and making same |
Country Status (37)
Country | Link |
---|---|
US (10) | US20020119443A1 (en) |
EP (3) | EP1301519B2 (en) |
JP (4) | JP4651264B2 (en) |
KR (2) | KR100749160B1 (en) |
CN (2) | CN1291994C (en) |
AP (1) | AP1466A (en) |
AU (3) | AU2001282941C1 (en) |
BE (1) | BE2016C018I2 (en) |
BG (1) | BG66037B1 (en) |
BR (1) | BRPI0112646B8 (en) |
CA (3) | CA2725819C (en) |
CY (2) | CY2016008I2 (en) |
CZ (2) | CZ304886B6 (en) |
DK (2) | DK2682397T3 (en) |
EA (1) | EA004926B1 (en) |
EE (1) | EE05366B1 (en) |
ES (2) | ES2536972T5 (en) |
FR (1) | FR16C0013I2 (en) |
HK (2) | HK1054238A1 (en) |
HR (2) | HRP20160074B1 (en) |
HU (2) | HU230960B1 (en) |
IL (1) | IL153658A0 (en) |
IS (1) | IS2985B (en) |
LT (2) | LT2682397T (en) |
LU (1) | LU93029I2 (en) |
MX (1) | MXPA03000587A (en) |
NL (1) | NL300803I2 (en) |
NO (6) | NO336718B1 (en) |
NZ (3) | NZ535408A (en) |
OA (1) | OA12393A (en) |
PL (1) | PL213214B1 (en) |
PT (2) | PT2682397T (en) |
SI (2) | SI1301519T1 (en) |
TR (1) | TR200300055T2 (en) |
UA (1) | UA75889C2 (en) |
WO (1) | WO2002008241A2 (en) |
ZA (1) | ZA200210271B (en) |
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