EP0647716A1 - Vector comprising viral gene transcribed by ARN polymerase III - Google Patents

Vector comprising viral gene transcribed by ARN polymerase III Download PDF

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EP0647716A1
EP0647716A1 EP93401745A EP93401745A EP0647716A1 EP 0647716 A1 EP0647716 A1 EP 0647716A1 EP 93401745 A EP93401745 A EP 93401745A EP 93401745 A EP93401745 A EP 93401745A EP 0647716 A1 EP0647716 A1 EP 0647716A1
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gene
vector
rna
viral
vector according
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EP0647716B1 (en
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Alain Doglio
Jean-Claude Lefèbvre
Laurence Cagnon
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Universite de Nice Sophia Antipolis UNSA
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Universite de Nice Sophia Antipolis UNSA
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/005Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2710/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA dsDNA viruses
    • C12N2710/00011Details
    • C12N2710/10011Adenoviridae
    • C12N2710/10311Mastadenovirus, e.g. human or simian adenoviruses
    • C12N2710/10322New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2740/00Reverse transcribing RNA viruses
    • C12N2740/00011Details
    • C12N2740/10011Retroviridae
    • C12N2740/13011Gammaretrovirus, e.g. murine leukeamia virus
    • C12N2740/13041Use of virus, viral particle or viral elements as a vector
    • C12N2740/13043Use of virus, viral particle or viral elements as a vector viral genome or elements thereof as genetic vector

Definitions

  • the present invention relates to recombinant DNA vectors, in particular of the plasmid or viral type, comprising a transcription cassette by RNA polymerase III constituted by a viral gene transcribed naturally by RNA polymerase III.
  • the present invention also relates to eukaryotic cells transfected or infected with vectors according to the invention.
  • the present invention also relates to a method of intracellular production of an RNA fragment in vitro or in vivo by culture of eukaryotic cells transfected or infected with the vectors according to the invention.
  • the present invention also relates to the use of vectors according to the invention as a medicament.
  • Antisense molecules are RNA sequences which selectively hybridize to messenger RNAs of which they are complementary and thus block the expression of the gene considered (maturation of RNA, translation). The work carried out since the early 1980s attests to the effectiveness of such a system for suppressing numerous cellular or viral functions (1,2).
  • antisense lies in the fact that these molecules are effective at significant intracellular concentrations much much higher than those of their substrate.
  • the intracellular concentration of antisense molecules being the result of the difference between synthesis and degradation, solutions were sought according to the invention which favor the synthesis and the stability of the products formed.
  • the operating efficiency of the antisense molecule vis-à-vis its target is an important parameter since the more a molecule is "powerful" the less it will require a high concentration to obtain a maximum effect.
  • RNA polymerase III is the eukaryotic enzyme responsible for the synthesis of a wide variety of small cytoplasmic or nuclear RNAs.
  • the main representatives are transfer RNAs (tRNA) or ribosomal RNAs of type 5S (3).
  • RNA polymerase III is capable of efficiently transcribing cloned DNA fragments into the acellular system. This is possible provided that these DNA fragments contain the promoter regions specific for transcription by polymerase III. These promoter regions are now well characterized (4) and comes out above all constituted by intragenic regions arranged in a discontinuous manner. In the case of tRNA type genes, these are two regions of DNA: "box A” and “box B” each formed by II nucleotides (consensus sequence) and spaced by an intermediate region of variable size ( 4).
  • RNA transcribed by polymerase III are remarkable for their small size and especially for their conformation in space.
  • clover leaf structure of the tRNAs is particularly well known. This secondary structure probably ensures the tRNA stability but above all functionality.
  • the sequences present at the level of the loops (anticodon) are free to hybridize on a complementary RNA.
  • Cotten and Birnstiel in 1989 (5) proposed to insert a "ribozyme / antisense" sequence in the tRNA met gene of Xenopus.
  • the oligonucleotide was inserted into the intermediate region located between boxes A and box B of the promoter regions so as to be correctly presented at the level of the anticodon (ribtRNA met , reference 2).
  • viruses have genes transcribed by RNA polymerase III.
  • Adenoviruses have two genes, of similar organization, called VAI and VAII (VA: Virus Associated) coding for two different VA-RNA VA-RNAI and VA-RNAII (6).
  • VA genes are naturally cloned and functional in the genome of the Adenoviruses.
  • VA-RNA molecules There are more than 10 7 VA-RNA molecules in a cell infected with an Adenovirus.
  • These small RNAs comprising 150 nucleotides, are transcribed from a promoter comprising two distinct regions (box A and box B) located in the L1 region of the Adenovirus genome (7).
  • VA-RNA has an effect on translation: adenovirus mutants defective in VA-RNA normally express their messenger RNAs but are unable to translate them efficiently.
  • the explanation for this phenomenon is that the DAI protein kinase induced by interferon is inhibited by VA-RNAI, which allows its eIF-2 substrate to escape phosphorylation and therefore inactivation (9) (the factor eIF-2 being necessary for the initiation of translation).
  • VA-ARNI The interaction between VA-ARNI and kinase has been well documented (10,11). They described two distinct regions of RNA, one involved in the binding of RNA with the DAI protein (nucleotides 93 to 136) and the other in the inhibition of kinase activity (nucleotides 54 to 77).
  • Jennings and Molloy (12) have shown that it is possible to repress the expression of a replicon of the SV40 virus in COS1 cells, using an anti SV40 antisense of 163 bp (T antigen) grafted at the end. 3 'of the VAI gene.
  • T antigen 163 bp
  • a short antisense sequence has been inserted inside the VA gene, with the aim of obtaining a functional assembly, that is to say retaining the partially double-stranded structure of the VA gene and its conformation. loop, hairpin type, which interacts with protein kinase.
  • This maintenance of the structural configuration results in greater intracellular stability, on the one hand and a conservation of the functionality of the VA gene, on the other hand.
  • these VA genes are therefore used as a shuttle system, in particular for the development of a new family of antisense RNA molecules expressed in eukaryotes and potentially usable for a wide range of applications.
  • RNA Polymerase III to efficiently transcribe cloned genes (VAI) carrying antisense or ribozyme sequences (in the form of exogenous DNA fragments of small sizes -15 to 25 nucleotides- inserted in the gene under consideration).
  • the present invention relates to a recombinant DNA vector comprising a transcription cassette by RNA polymerase III, consisting of a viral gene transcribed by RNA polymerase III into which an oligonucleotide has been inserted. , DNA fragment, between or outside boxes A and B constituting said promoter of the viral gene.
  • the rate of transcription of VA genes by polymerase III is very important. This enzyme is well preserved in most eukaryotes and therefore adaptable to many cellular or animal models, the ubiquitous representation of this enzyme in all tissues does not pose any specific tissue limitation.
  • genes transcribed by this enzyme is interesting due to the absence of regulatory DNA sequences in the "extragenic" position, which simplifies the transcriptional regulatory scheme and ensures compacting of genetic information.
  • the intragenic position of the promoters avoids having to manipulate non-transcribed regions, which makes it possible to manipulate small genes which are easy to clone.
  • the viral genes according to the invention such as VA, offer numerous possibilities for the insertion of oligonucleotides without affecting their rate of transcription and the secondary structure of the transcribed RNA.
  • the viral gene is a VA gene from an adenovirus, or an EBR gene from an Epstein Barr virus or a viral gene transcribed by RNA polymerase III from a Herpes virus.
  • VAI or VAII gene of an Adenovirus in particular the Adenovirus 2.
  • the VAI gene of the Adenoviruses was chosen as a pilot system, as an example of embodiment of the invention, because it is particularly well described in the literature. However, all of the VAI-like viral genes transcribed by RNA Polymerase III may also be suitable.
  • a suitable vector according to the invention there may be mentioned a plasmid or episomal replicative vector or a viral vector.
  • an episomal vector carrying the origin of replication of the Epstein Barr virus will be used, as well as the sequences coding for the protein EBNA-1.
  • an episomal replicating vector may be a good means of expressing antisense in eukaryotic cells and in particular in the T lymphocyte.
  • the cloning of the VA / antisense genes into vectors replicating in episomal form in the eukaryotic system is particularly suitable.
  • These vectors carry the origin of replication of the Epstein Barr virus (OriP) as well as coding sequences for the Ebnal protein strictly necessary for the replication of the DNA molecule carrying Ori P.
  • the viral vector according to the invention is preferably a DNA virus, but can also be a retroviral RNA vector; it will then include the RNA transcript of the transcription cassette according to the invention. Given the fact that infection of a cell by a retrovirus results in the production of circularized proviral DNA, it is this proviral DNA which will in turn be transcribed by RNA polymerase III according to the invention, this not excluding the functioning of the genetic construction used once the retroviral DNA is integrated.
  • the oligonucleotide is inserted into the intermediate regions located between the boxes A and B of the VA gene.
  • the VA gene is inactivated as regards the inhibition of the action of interferon, by deletion or mutation in the VA gene of the elements of sequence critical for the inactivation of the protein kinase , DAI, induced by interferon.
  • This inactivation can be done by direct insertion of the oligonucleotide in the regions responsible for the activity of inhibiting the action of interferon, a region described to be in the VA 1 gene of Adenovirus 2 between and y including nucleotides 10672 and 10745. Also by this means, the affinity of the oligonucleotide for the target sequence is optimized, taking into account the spatial configuration of this loop-shaped region.
  • the integrity of the central region of the VA gene of nucleotides 10694 to 10730 is indeed critical for the maintenance of the inhibitory activity of VA RNA with respect to P68 kinase. This region is located outside the regulatory zones (boxes A and B) and its deletion does not affect the transcription of the VA gene.
  • the natural activity of the VA 1 gene of the Adenovirus 2 is inactivated by the insertion of the antisense in the central region of nucleotides 10694 to 10730, more particularly 10702 to 10728, or in place of this region which has been deleted.
  • a VA gene deleted from the central region is constructed.
  • the "overlap" PCR FIG. 7
  • a new restriction site (EcoRV; GATATC) can be created in particular by the juxtaposition of the two ends framing the deletion (GAT and ACC) thanks to the mutation of nucleotide 10729 (ACC replaced by ATC). This additional site can be used later for the cloning of antisense or ribozymic sequences in place of the deleted IV loop.
  • This gene is called VA delta IV.
  • the terminal end of the VA delta -IV gene can also be used as an insertion site.
  • the added sequences are then placed just upstream of the stop sequence (-TTTT-) and define an extension with respect to the VA molecule.
  • the unique Eco47111 site (-AGC / GCT) of nucleotides 10758 to 10763 can be used for this purpose.
  • the oligonucleotide is inserted at the level of nucleotide 10711 of the VAI gene of the Adenovirus 2 represented in FIG. 1.
  • the oligonucleotide according to the invention comprises from 15 to 40 nucleotides, more preferably still 15 to 25.
  • the oligonucleotide may correspond to an antisense RNA molecule or to a ribozymic RNA structure.
  • Ribozyme sequences are minimum consensus sequences required for one RNA molecule to be able to hydrolyze another RNA molecule in a catalytic fashion. These catalytically active ribonucleotides (ribozymes) are capable of cleaving a target RNA on which they are specifically hybridized (thanks to two sequences of 15 nucleotides complementary to the target RNA and placed on either side of the catalytic sequence) . These ribozymic sequences comparable to "super antisense" can be used with profit in our system by increasing the functional efficiency of the whole.
  • the present invention therefore also relates to a vector comprising several identical or different viral genes transcribed by RNA polymerase III into which an identical or different oligonucleotide has been inserted outside the boxes A and B of each of said viral genes.
  • the present invention also relates to a process for the intracellular production of an RNA fragment in vitro or in vivo in which eukaryotic cells comprising RNA polymerase III are transfected or infected with a replicative vector according to the invention, comprising as an oligonucleotide a DNA fragment corresponding to the reverse transcript of said RNA and in that the eukaryotic cells thus transfected or infected are cultured in an appropriate culture medium.
  • the present invention also further relates, as we have seen, to the use, as a medicament, of a vector according to the invention, in which the oligonucleotide is transcribed into an RNA molecule "antisense” or a ribozymal RNA molecule blocking the expression of a gene involved in a pathology by hybridizing and, if necessary, by cutting its messenger RNA of viral, bacterial or parasitic cell origin.
  • the medicament according to the invention can be used as an antiviral, antitumor, antibiotic or antiparasitic agent, or in any pathology where a gene is abnormally expressed either by mutation or by deregulation.
  • the present invention also relates to a method for blocking the expression of a gene in vivo using a vector according to the invention, the said oligonucleotide of which is transcribed into an antisense or ribozymic RNA molecule which hybridizes to , or respectively, cuts the messenger RNA of said gene.
  • the present invention also relates to a method of treating cells ex vivo using a vector according to the invention.
  • a viral or retroviral vector which penetrates into the cell by transfection or infection is entirely appropriate.
  • a vector is used consisting of a defective viral vector such as an adenovirus or a defective retroviral vector such as a murine retrovirus.
  • the vector used to convey the gene construction according to the invention to its theoretical target can be a retroviral vector with transport of the recombinant construction by a borrowing capsid and insertion of the genetic material into the DNA of the host cell.
  • Characterization of the precursor cells has made it possible to establish that the presence of a surface protein (CD34) makes it possible to distinguish them from other cell types as being CD34 + cells.
  • CD34 surface protein
  • Retroviruses which integrate definitively into the genome of the recipient cell and for which the molecular mechanism of replication is relatively well known, appear to be good candidates for hematopoietic cell gene therapy.
  • the VA-antisense genes have the characteristic of being transcribed by RNA Polymerase III. This feature led to the development of two types of retroviral constructs in which the VA-anti rev genes were cloned as described in Example 6.
  • DNA viruses such as adenoviruses, may also be suitable for this approach, although in this case maintaining DNA in an episomal state as an autonomous replicon is the most likely situation.
  • Adenoviruses have certain interesting properties. In particular, they have a fairly broad host spectrum, are capable of infecting quiescent cells, and they do not integrate into the genome of the infected cell. For these reasons, adenoviruses have already been used for gene transfer in vivo. To this end, different vectors derived from adenoviruses have been prepared, incorporating different genes (beta-gal, OTC, alpha-1At, cytokines, etc.). To limit the risks of multiplication and the formation of infectious particles in vivo, the adenoviruses used are generally modified so as to render them incapable of replication in the infected cell.
  • the adenoviruses used are generally deleted from the E1 regions (E1 a and / or E 1 b) and possibly E3.
  • the defective recombinant adenoviruses according to the invention can be prepared by any technique known to a person skilled in the art (Levrero et al., Gene 101 (1991) 195, EP 185 573; Graham, EMBO J.3 (1984) 2917). In particular, they can be prepared by homologous recombination between an adenovirus and a plasmid in an appropriate cell line.
  • the cell line used must preferably (i) be transformable by said elements, and (ii), contain the sequences capable of complementing the part of the defective adenovirus genome, preferably in integrated form to avoid the risks of recombination.
  • a line As an example of a line, mention may be made of the human embryonic kidney line 293 (Graham et al., J. Gen. Virol 36 (1977) 59) which contains in particular, integrated into its genome, the left part of the genome d '' Adenovirus Ad5 (12%).
  • adenoviruses which have multiplied are recovered and purified according to conventional molecular biology techniques.
  • the genome of the defective recombinant adenovirus is inserted, at the level of the VA gene, an exogenous DNA sequence in particular coding for an antisense RNA.
  • compositions comprising one or more virus vectors such as defective recombinants as described above can be formulated for topical, oral, parenteral, intranasal, intravenous, intramuscular, subcutaneous, intraocular, etc. administration.
  • they Preferably, they contain pharmaceutically acceptable vehicles for an injectable formulation.
  • saline solutions monosodium phosphate, disodium, chloride of sodium, potassium, calcium or magnesium, etc., or mixtures of such salts
  • sterile, isotonic, or of dry composition in particular lyophilized, which, by addition according to the case of sterilized water or physiological saline, allow the constitution of solutes particular injectables of sterile, isotonic solutions, or dry compositions, in particular lyophilized, which by addition, as the case may be, of sterilized water or physiological saline, allow the constitution of injectable solutes.
  • the doses of defective recombinant virus used for injection can be adapted as a function of various parameters, and in particular as a function of the mode of administration used, of the pathology concerned, of the gene to be expressed, or even of the duration of the treatment sought.
  • the recombinant viruses according to the invention can be formulated and administered in the form of doses of between 10 and 10 pfu / ml, and preferably 10 to 10 pfu / ml.
  • the term pfu (“plaque forming unit”) corresponds to the infectious power of a virus solution, and is determined by infection of an appropriate cell culture, and measures, generally after 48 hours, the number of plaques of infected cells. The techniques for determining the pfu titer of a viral solution are well documented in the literature.
  • genetically modified viruses as a shuttle system to transport the modified genetic material not only allows the genetic material to enter the recipient cell through the use of a borrowing viral capsid, but also makes it possible to treat simultaneously, and over a short period of time, a large number of cells; this opens the way to curative approaches aimed in vitro at cells already infected with the virus to be inhibited, but also allows the therapeutic treatment applied to the whole organism.
  • viral transactivators can be used.
  • the protein E1 of Adenovirus stimulates the transcriptional activity of polymerase III (23), in particular by mobilizing the limiting factor TFIIIC.
  • This potentiating effect of polymerase III is especially observed if the DNA carrying the VA gene is in episomal form (frequent case for Adenoviruses).
  • This property of the E1A protein can be used to stimulate the efficiency of the "VA-RNA polymerase III" system, especially during transient expression experiments, either with the E1 gene cis-cloned by the VA-RNA gene, or in trans by cotransfection.
  • the Tat protein of HIV could stimulate the transcriptional activity of polymerase III.
  • antisense cassettes adaptable to many research subjects are envisaged in very numerous fields including in particular molecular oncology, cellular determinism.
  • Figure 1 represents the nucleotide sequence of the VAI gene of Adenovirus 2.
  • the assays for HIV antigens were carried out 5 hours after renewal of the culture supernatant and 24 days after the start of the infection.
  • VA-RNAI the structure VA-RNAI (A) and two possible structures for VA-RNAI (B and C) are described in reference 13.
  • the gene chosen for the experiments proposed below is the VA-RNAI gene of Adenovirus 2.
  • the sequence of Adenovirus is available in the database: Genbank - ref .: ADBVAI sequences transcribed from nucleotide 10610 to nucleotide 10769 ( Figure 1 shows the sequence elements involved). The conformation of the RNA in solution is published and presented in Figure 6 (13,14).
  • the cloning of the recombinant VAI gene is carried out in a plasmid vector of the PVV2 type (15) carrying in cis the gene for resistance to geneticin (under dependence of the TK promoter) or in a vector with autonomous replication in eukaryotic system of the pCEP-4 type. (marketed by Invitrogen) or pHEBo (kindly provided by RP SEKALY, laboratory of Immunology, Montreal). These latter vectors carry the OriP and Ebna-1 regions and they also carry the hygromycin resistance gene (16,17).
  • the Adenovirus 2 VAI gene was cloned after a PCR amplification step.
  • the oligonucleotides used for this PCR were chosen on the 5 ′ side upstream of the transcription start site of the VAI gene and on the 3 ′ side downstream of the termination TTTT site (FIG. 1).
  • the 5 ′ ends of each oligonucleotide are provided with the Clal enzymatic cleavage site, a unique site on the plasmid pVV2, or else with the Hindlll site for cloning on the plasmid pHEBo.
  • the transformation of bacteria with "pVV2-VAI" constructs made it possible to obtain several recombinant clones.
  • oligonucleotides to be inserted was first determined in accordance with the antisense sequences already published by other authors: anti-rev (18) or anti-tat (19) and random sequence serving as specific control ( see Fig. 2) (tat and rev proteins are two viral proteins whose regulatory role is critical for virus replication).
  • the constructions obtained were all sequenced (on 200 nucleotides) and then tested in a cell-free transcription system to ensure the functionality as well as the relative transcription efficiency of each construction.
  • the protocol followed is that described by Wu (21) and Weil (22). Briefly, 3 ⁇ g of DNA to be tested are incubated for 90 min at 29 ° C. in the presence of cell extracts containing polymerase III activity and of nucleotides, in particular of alpha- p32- dGTP. After synthesis, the reaction products are analyzed on acrylamide gel (Figure 3 shows the type of results obtained).
  • VA-ARNI 160 nucleotides namely: native VA-ARNI 160 nucleotides, VA-RNAI / anti-rev 188, VA-RNAI / anti-state 190.
  • VA-RNAI / ribozyme constructions are not not yet analyzed.
  • antisense tools are carried out, in the case of antiviral antisense, on permissive cell lines for the replication of the virus studied.
  • permissive cell lines for the replication of the virus studied.
  • the CEM or MOLT-4 lymphoblastoid lines both good virus producers, are chosen.
  • the cells of the CEM line (free of mycoplasmas) were transfected with the various recombinant plasmids (pVV2 / VAI / anti-rev, pVV2 / VAI / anti-tat, pVV2 / VAI and control pVV2.
  • the cell transfection techniques used depend on of the cell model studied.
  • electroporation was preferably used (Gene Pulser (R) type device, Biorad, electric shocks are produced at 200V and 960 ⁇ F).
  • the transduced cells are distributed in 96 independent culture wells and selected by the action of antibiotics geneticin 1.5 mg / ml (plasmid pVV2) or hygromycin 400 ug / ml (plasmid pHEBo). Maintaining the selection pressure remains necessary throughout the experiments.
  • the CEM line has been transfected with recombinant constructs of the plasmid pVV2 / anti-rev, pVV2 / anti-tat, pVV2 / VAI and pVV2.
  • Non-clonal, genetic-resistant cell populations from different culture wells are selected on the basis of good cell multiplication with a low mortality rate.
  • the cell populations resulting from the transfection with “anti-sense” plasmids are numbered AS index X (AS: AntiSens, X n ° of the selection well).
  • the measurement of viral replication is estimated by indirect immunofluorescence. Briefly, 5000 cells are fixed on glass slides and incubated for 30 min. in the presence of an anti-HIV serum from a seropositive patient diluted 1/40. The revelation is carried out through the use of a second antibody, specific for human immunoglobins, conjugated to fluorescein isothiocyanate (FITC).
  • FITC fluorescein isothiocyanate
  • Viral replication can also be measured by assaying the concentration of HIV-1 antigens present in the culture supernatant (assay carried out with the HIVAG-1 (R) kit from ABBOT). The kinetics of infection are carried out simultaneously on the cells transfected with the different plasmids and resulting from selection by geneticin.
  • Figure 4 presents the results obtained by infecting in a comparative manner the CEM line serving as a positive control, the CEM line resistant to geneticin (CEM.gén.r.) transfected with pVV2), 2 "anti-tat” populations (AS1 and AS2) and 2 "anti-rev” populations (AS3 and AS4).
  • the measurement of viral replication was followed by observation and counting of the number of HIV positive cells detected by indirect immunofluorescence on different days after infection: The superposition of the curves "CEM” and "CEM gen.r.” shows that the presence of geneticin in the medium does not affect the infection of CEM cells by the HIV virus.
  • Figure 5 presents the results obtained during an experiment of the same type, but carried out with a larger panel of ASX populations and quantified by the measurement of the HIV-1 antigens present in the supernatants on different days after HIV infection. . Only the results obtained on day 24 are presented (these being representative of the results obtained on other days). In order to avoid the accumulation of viral particles and to distort the comparative measurements, the supernatants are collected 5 hours after the change of previous medium.
  • the populations "VAI / anti-tat” correspond to conditions AS1, AS2, AS6, AS7 and AS8, and the populations “VAI / anti-rev” correspond to conditions AS3, AS4, AS9, AS1 and AS12.
  • RNAs are prepared according to the following protocol: 25.10 6 are rinsed twice with saline buffer, the cells are lysed at 4 ° C by hypotonic shock (Tris 10 mM ph 7.4, NaCl 10 m M , MgCl 2 , 3 mM ) and per share of NP 40 1%; after centrifugation (10,000 rpm, 10 minutes), the supernatant containing the cytoplasmic RNA is freed from residual proteins by 3 phenol-chloroform extractions and the RNA are concentrated with ethanol.
  • hypotonic shock Tris 10 mM ph 7.4, NaCl 10 m M , MgCl 2 , 3 mM
  • RNA 10 ⁇ g of RNA are analyzed by Northern blot and hybridized with a single strand probe specific for the 3 ′ region of the VA gene.
  • the results obtained are presented in FIG. 8.
  • the results presented here illustrate the fact that in vivo the constructs tested (here A5 io , "VA / anti-rev”) are expressed and that the transcription product obtained has indeed the expected size .
  • Example 6 Vectorization of VA-antisense genes by modified murine retroviruses - Transfer to the progenitors of hematopoietic cells.
  • Type I retroviral vector 1) Type I retroviral vector:
  • the vector which is used is the plasmid pMV7 (P.T. Kirschmeier, GM. Housey, M.D. Jonhson, A.S. Perkins and I.B. Weinstein, 1988, DNA, Vol. 7, 3, 219-225). It is composed on the one hand of the sequences necessary for plasmid maintenance and on the other art of the two LTRs of the Moloney virus flanking the gene for resistance to neomycin (under the dependence of the TK proimotor). The Hind III, Clal and EcoRI cloning sites located between the 5 'LTR and the neomycin gene allow the insertion of exogenous sequences.
  • the packaging cell is the DAMP cell (R. Mann, R.C. Mulligan and D.
  • the genetic constructs were cloned at the Hind III site of pMV7 and transfected the recombinant plasmids obtained in the DAMP cell.
  • DAMP cells that have become resistant to neomycin have been subcloned.
  • the clones exhibiting a high infectious power, detected in the culture supernatants, were selected.
  • These clones made it possible to infect lymphocytes of the CEM line (T4 auxiliary lymphocytes).
  • the infection is carried out thanks to an overnight co-culture, between the DAMPs and the lymphocytes. Lymphocytes that have been infected have in turn become resistant to neomycin and can thus be selected.
  • the RNAs from these lymphocytes were analyzed and the expression of the VA-anti rev gene (carried by the integrated proviral sequence) detected.
  • RNA Polymerase II which transcribes the entire viral genome from the 5 'LTR and the activity of RNA Polymerase III could, in certain cases, prove to be an element. unfavorable for the effectiveness of such a system.
  • the enhancer signals present in the U3 region of the 3 ′ LTR of the Moloney virus cloned in pMV7 were deleted and these signals were replaced by single cloning sites on this plasmid (these modifications being carried out using PCR technology). Antisense constructions are inserted at these sites.
  • This modification has two advantages: it allows on the one hand to duplicate the cloned gene thanks to the game of reverse transcription (the U3 region present on each of the two LTRs comes from the U3 region located on the LTR in 3 ′ of the previous provirus) but above all, this no longer allows the RNA Polymerase II to transcribe the provirus integrated into the recipient cell. This avoids interference with RNA Polymerase III and ensures operational safety with regard to the always possible activation of adjacent genes.
  • the DAMP packaging cell is changed in favor of the CRIP cell (O. Danos and RC Mulligan, Proc. Natl. Acad. Sci., 1988, 85, 6460-6446).
  • the CRIP cell contains two helper retroviral genomes deleted from the 3 ′ LTR end of the packaging signal and mutated one in the Gag region and the other in the env region.
  • the transient expression of the VA-antisense genes has been verified in the cellular system.
  • the VA-antisense gene is not integrated into the genome of the host cell and accumulates significantly in the nucleus where it is transcribed.
  • Adherent cells (line 293: kidney embryonic cells, human) were transfected with 20 g of the plasmid pVA anti rev.
  • the technique used is transfection with calcium phosphate. This technique consists in putting in contact for 18 hours, the plasmid DNA precipitated by calcium phosphate and the cells by increasing the absorption of DNA on cell membranes and by limiting the action of cellular DNases on DNA. entering.
  • the RNAs are prepared 48 hours after transfection, as described above, and analyzed by Northern blot with a probe specific for anti rev VA RNA.
  • FIG. 11 shows a stronger transient expression of RNA (lane 293) in comparison with the RNA produced in cells which stably express the integrated VA RNA (lane CEM).

Abstract

The subject of the present invention is a recombinant vector comprising a cassette for transcription by RNA polymerase III, which cassette consists of a viral gene transcribed by RNA polymerase III into which an oligonucleotide DNA fragment has been inserted between or outside the boxes A and B constituting the said viral gene promoter. The subject of the present invention is also a process for the intracellular production of an RNA fragment in vitro or in vivo in which eukaryotic cells containing RNA polymerase III are transfected or infected with a vector according to the invention containing, as oligonucleotides, a DNA fragment corresponding to the reverse transcript of the said RNA and in that the eukaryotic cells thus transfected or infected are cultured in an appropriate culture medium. Finally, the present invention also relates to the use of the vectors as medicinal product.

Description

La présente invention concerne des vecteurs d'ADN recombinants, notamment de type plasmidique ou viral, comportant une cassette de transcription par l'ARN polymérase III constituée par un gène viral transcrit naturellement par l'ARN polymérase III.The present invention relates to recombinant DNA vectors, in particular of the plasmid or viral type, comprising a transcription cassette by RNA polymerase III constituted by a viral gene transcribed naturally by RNA polymerase III.

La présente invention concerne aussi des cellules eucaryotes transfectées ou infectées par des vecteurs selon l'invention.The present invention also relates to eukaryotic cells transfected or infected with vectors according to the invention.

La présente invention concerne également un procédé de production intracellulaire d'un fragment d'ARN in vitro ou in vivo par culture de cellules eucaryotes transfectées ou infectées par les vecteurs selon l'invention.The present invention also relates to a method of intracellular production of an RNA fragment in vitro or in vivo by culture of eukaryotic cells transfected or infected with the vectors according to the invention.

La présente invention concerne également l'utilisation de vecteurs selon l'invention à titre de médicament.The present invention also relates to the use of vectors according to the invention as a medicament.

Les molécules antisens sont des séquences d'ARN qui s'hybrident de manière sélective aux ARN messagers dont elles sont complémentaires et bloquent ainsi l'expression du gène considéré (maturation de l'ARN, traduction). Les travaux réalisés depuis le début des années 80 attestent de l'efficacité d'un tel système pour réprimer de nombreuses fonctions cellulaires ou virales (1,2).Antisense molecules are RNA sequences which selectively hybridize to messenger RNAs of which they are complementary and thus block the expression of the gene considered (maturation of RNA, translation). The work carried out since the early 1980s attests to the effectiveness of such a system for suppressing numerous cellular or viral functions (1,2).

Les perspectives d'applications potentielles de ces molécules antisens sont importantes en recherche fondamentale. L'utilisation des antisens pour corriger l'expression de certains phénotypes "anormaux" ou pour lutter efficacement contre des virus pour lesquels les approches classiques (vaccination, chimiothérapie...) s'avèrent délicates, comme cela est le cas pour le virus de l'Immunodéficience Humaine (HIV).The prospects for potential applications of these antisense molecules are important in basic research. The use of antisense to correct the expression of certain "abnormal" phenotypes or to fight effectively against viruses for which conventional approaches (vaccination, chemotherapy ...) prove to be delicate, as is the case for the virus of Human Immunodeficiency (HIV).

Un des problèmes posés par l'utilisation des antisens réside dans le fait que ces molécules sont efficaces à des concentrations intracellulaires importantes bien largement supérieures à celles de leur substrat. La concentration intracellulaire de molécules antisens étant le résultat de la différence entre la synthèse et la dégradation, on a recherché selon l'invention des solutions favorisant la synthèse et la stabilité des produits formés. Dans cette optique, l'efficacité de fonctionnement de la molécule antisens vis a vis de sa cible est un paramètre important puisque plus une molécule sera "puissante" moins elle nécessitera une concentration élevée pour obtenir un effet maximum.One of the problems posed by the use of antisense lies in the fact that these molecules are effective at significant intracellular concentrations much much higher than those of their substrate. The intracellular concentration of antisense molecules being the result of the difference between synthesis and degradation, solutions were sought according to the invention which favor the synthesis and the stability of the products formed. In this perspective, the operating efficiency of the antisense molecule vis-à-vis its target is an important parameter since the more a molecule is "powerful" the less it will require a high concentration to obtain a maximum effect.

L'ARN polymérase III est chez les eucaryotes l'enzyme responsable de la synthèse d'une grande variété de petits ARN cytoplasmiques ou nucléaires. Les principaux représentants étant les ARN de transfert (tRNA) ou les ARN ribosomiques de type 5S (3).RNA polymerase III is the eukaryotic enzyme responsible for the synthesis of a wide variety of small cytoplasmic or nuclear RNAs. The main representatives are transfer RNAs (tRNA) or ribosomal RNAs of type 5S (3).

L'ARN polymérase III est capable de transcrire efficacement en système acellulaire des fragments d'ADN clonés. Ceci est possible à la condition que ces fragments d'ADN contiennent les régions promoteur spécifiques à la transcription par la polymérase III. Ces régions promoteur sont à présent bien caractérisées (4) et sort avant tout constituées par des régions intragéniques disposées de manière discontinue. Dans le cas des gènes de type tRNA, il s'agit de deux régions d'ADN : la "box A" et la "box B" chacune formée par Il nucléotides (séquence consensus) et espacées par une région intermédiaire de taille variable (4).RNA polymerase III is capable of efficiently transcribing cloned DNA fragments into the acellular system. This is possible provided that these DNA fragments contain the promoter regions specific for transcription by polymerase III. These promoter regions are now well characterized (4) and comes out above all constituted by intragenic regions arranged in a discontinuous manner. In the case of tRNA type genes, these are two regions of DNA: "box A" and "box B" each formed by II nucleotides (consensus sequence) and spaced by an intermediate region of variable size ( 4).

Les ARN transcrits par la polymérase III sont remarquables par leur petite taille et surtout par leur conformation dans l'espace. Ainsi la structure en feuille de trèfle des tRNA est particulièrement bien connue. Cette structure secondaire assure vraisemblablement aux tRNA stabilité mais surtout fonctionnalité. Les séquences présentes au niveau des boucles (anticodon) sont libres de s'hybrider sur un ARN complémentaire. Cotten et Birnstiel ont en 1989 (5) proposé d'insérer une séquence "ribozyme/antisens" dans le gène tRNAmet de Xenopus. L'oligonucléotide a été inséré dans la région intermédiaire située entre les box A et box B des régions promoteur de façon à être correctement présenté au niveau de l'anticodon (ribtRNAmet , référence 2).The RNA transcribed by polymerase III are remarkable for their small size and especially for their conformation in space. Thus, the clover leaf structure of the tRNAs is particularly well known. This secondary structure probably ensures the tRNA stability but above all functionality. The sequences present at the level of the loops (anticodon) are free to hybridize on a complementary RNA. Cotten and Birnstiel in 1989 (5) proposed to insert a "ribozyme / antisense" sequence in the tRNA met gene of Xenopus. The oligonucleotide was inserted into the intermediate region located between boxes A and box B of the promoter regions so as to be correctly presented at the level of the anticodon (ribtRNA met , reference 2).

Certains virus (Adénovirus, Epstein Barr virus, Herpes virus) sont dotés de gènes transcrits par l'ARN polymérase III. En particulier, les Adénovirus sont dotés de deux gènes, d'organisation similaire, appelés VAI et VAII (VA : Virus Associated) codant pour deux VA-ARN différents VA-ARNI et VA-ARNII (6). Les gènes VA sont naturellement clonés et fonctionnels dans le génome des Adénovirus. On trouve plus de 107 molécules VA-ARN dans une cellule infectée par un Adénovirus. Ces petits ARN, comportant 150 nucléotides, sont transcrits à partir d'un promoteur comportant deux régions distinctes (box A et box B) localisées dans la région L1 du génome de l'Adénovirus (7). Les VA-ARN exercent un effet au niveau de la traduction : les mutants d'Adénovirus défectifs en VA-ARNI expriment normalement leurs ARN messagers mais sont incapables de les faire traduire efficacement. L'explication de ce phénomène est que la protéine kinase DAI induite par l'interféron est inhibée par la VA-ARNI, ce qui permet à son substrat eIF-2 d'échapper à la phosphorylation et donc à l'inactivation (9) (le facteur eIF-2 étant nécessaire à l'initiation de la traduction). L'interaction entre le VA-ARNI et la kinase a été bien documentée (10,11). Ils ont décrit deux régions distinctes de l'ARN, l'une étant impliquée dans la liaison de l'ARN avec la protéine DAI (nucléotides 93 à 136) et l'autre dans l'inhibition de l'activité kinasique (nucléotides 54 à 77).Some viruses (Adenovirus, Epstein Barr virus, Herpes virus) have genes transcribed by RNA polymerase III. In particular, Adenoviruses have two genes, of similar organization, called VAI and VAII (VA: Virus Associated) coding for two different VA-RNA VA-RNAI and VA-RNAII (6). The VA genes are naturally cloned and functional in the genome of the Adenoviruses. There are more than 10 7 VA-RNA molecules in a cell infected with an Adenovirus. These small RNAs, comprising 150 nucleotides, are transcribed from a promoter comprising two distinct regions (box A and box B) located in the L1 region of the Adenovirus genome (7). VA-RNA has an effect on translation: adenovirus mutants defective in VA-RNA normally express their messenger RNAs but are unable to translate them efficiently. The explanation for this phenomenon is that the DAI protein kinase induced by interferon is inhibited by VA-RNAI, which allows its eIF-2 substrate to escape phosphorylation and therefore inactivation (9) ( the factor eIF-2 being necessary for the initiation of translation). The interaction between VA-ARNI and kinase has been well documented (10,11). They described two distinct regions of RNA, one involved in the binding of RNA with the DAI protein (nucleotides 93 to 136) and the other in the inhibition of kinase activity (nucleotides 54 to 77).

Jennings et Molloy (12) ont montré qu'il était possible de réprimer l'expression d'un réplicon du virus SV40, dans les cellules COS1, grâce à un antisens anti SV40 de 163 pb (antigène T) greffé à l'extréminité 3' du gène VAI. Après transfection des cellules COS par diverses constructions (sens, antisens), les auteurs montrent sur un système d'expression transitoire que l'antigène T est réprimé à 50%.Jennings and Molloy (12) have shown that it is possible to repress the expression of a replicon of the SV40 virus in COS1 cells, using an anti SV40 antisense of 163 bp (T antigen) grafted at the end. 3 'of the VAI gene. After transfection of the COS cells by various constructions (sense, antisense), the authors show on a transient expression system that the T antigen is repressed at 50%.

On a, selon la présente invention, inséré une courte séquence antisens à l'intérieur du gène VA, dans le but d'obtenir un ensemble fonctionnel, c'est-à-dire conservant la structure partiellement double brin du gène VA et sa conformation à boucle, du type épingle à cheveux, qui interagit avec la protéine kinase. Ce maintien de la configuration structurelle se traduit par une plus grande stabilité intracellulaire, d'une part et une conservation de la fonctionnalité du gène VA, d'autre part.According to the present invention, a short antisense sequence has been inserted inside the VA gene, with the aim of obtaining a functional assembly, that is to say retaining the partially double-stranded structure of the VA gene and its conformation. loop, hairpin type, which interacts with protein kinase. This maintenance of the structural configuration results in greater intracellular stability, on the one hand and a conservation of the functionality of the VA gene, on the other hand.

On a en effet, selon la présente invention, découvert que l'efficacité remarquable du fonctionnement de ces petits ARN dans leur rôle d'inhibition de l'activité de la protéine kinase DAI peut être utilisée en le détournant de sa vocation première et en le dirigeant vers une autre cible par le biais des antisens ou des ribozymes. Selon l'invention, on utilise donc ces gènes VA comme système navette, en particulier pour le développement d'une nouvelle famille de molécules d'ARN antisens exprimées chez les eucaryotes et potentiellement utilisables pour une large gamme d'applications.It has indeed been found, according to the present invention, that the remarkable efficiency of the functioning of these small RNAs in their role of inhibiting the activity of the protein kinase DAI can be used by diverting it from its primary vocation and by directing to another target via antisense or ribozymes. According to the invention, these VA genes are therefore used as a shuttle system, in particular for the development of a new family of antisense RNA molecules expressed in eukaryotes and potentially usable for a wide range of applications.

On a, selon la présente invention, développé un modèle de gène "cassettes" permettant l'insertion aisée d'oligonucléotides antisens ou de ribozymes dans le gène VA sans en affecter le taux de transcription et on a pu mesurer l'efficacité relative de ces constructions en matière d'inhibition de la réplication du virus HIV en culture. La présente invention repose en effet sur l'utilisation de l'ARN Polymérase III pour transcrire efficacement des gènes clonés (VAI) porteurs de séquences antisens ou ribozymes (sous forme de fragments d'ADN exogènes de petites tailles -15 à 25 nucléotides- insérés dans le gène considéré).We have, according to the present invention, developed a gene model "cassettes" allowing the easy insertion of antisense oligonucleotides or ribozymes in the VA gene without affecting the rate of transcription and we were able to measure the relative efficiency of these constructions in terms of inhibition of replication of the HIV virus in culture. The present invention is in fact based on the use of RNA Polymerase III to efficiently transcribe cloned genes (VAI) carrying antisense or ribozyme sequences (in the form of exogenous DNA fragments of small sizes -15 to 25 nucleotides- inserted in the gene under consideration).

Dans son aspect le plus général, la présente invention a pour objet un vecteur d'ADN recombinant comportant une cassette de transcription par l'ARN polymérase III, constitué par un gène viral transcrit par l'ARN polymérase III dans lequel on a inséré un oligonucléotide, fragment d'ADN, entre ou à l'extérieur des boites A et B constituant ledit promoteur du gène viral.In its most general aspect, the present invention relates to a recombinant DNA vector comprising a transcription cassette by RNA polymerase III, consisting of a viral gene transcribed by RNA polymerase III into which an oligonucleotide has been inserted. , DNA fragment, between or outside boxes A and B constituting said promoter of the viral gene.

Le taux de transcription des gènes VA par la polymérase III est très important. Cet enzyme est bien conservé chez la plupart des eucaryotes et de ce fait adaptable à de nombreux modèles cellulaires ou animaux, la représentation ubiquitaire de cet enzyme dans tous les tissus ne pose pas de limitation tissulaire spécifique.The rate of transcription of VA genes by polymerase III is very important. This enzyme is well preserved in most eukaryotes and therefore adaptable to many cellular or animal models, the ubiquitous representation of this enzyme in all tissues does not pose any specific tissue limitation.

L'utilisation de ces gènes viraux transcrits en grande quantité, stables et fonctionnels, en fait donc des systèmes de production in situ d'ARN particulièrement efficaces.The use of these viral genes transcribed in large quantities, stable and functional, therefore makes them particularly efficient systems for the production of RNA in situ.

L'organisation des gènes transcrits par cet enzyme est intéressante de par l'absence de séquences d'ADN régulatrices en position "extragénique", ce qui simplifie le schéma de régulation de la transcription et assure un compactage de l'information génétique. La position intragénique des promoteurs évite d'avoir a manipuler des régions non transcrites, ce qui permet de manipuler de petits gènes faciles à cloner. Enfin, les gènes viraux selon l'invention, tels que VA, offrent de nombreuses possibilités d'insertion d'oligonucléotides sans affecter leur taux de transcription et la structure secondaire de l'ARN transcrit.The organization of genes transcribed by this enzyme is interesting due to the absence of regulatory DNA sequences in the "extragenic" position, which simplifies the transcriptional regulatory scheme and ensures compacting of genetic information. The intragenic position of the promoters avoids having to manipulate non-transcribed regions, which makes it possible to manipulate small genes which are easy to clone. Finally, the viral genes according to the invention, such as VA, offer numerous possibilities for the insertion of oligonucleotides without affecting their rate of transcription and the secondary structure of the transcribed RNA.

Dans un mode de réalisation approprié, le gène viral est un gène VA d'un adénovirus, ou un gène EBR d'un virus Epstein Barr ou un gène viral transcrit par l'ARN polymérase III d'un virus Herpès.In a suitable embodiment, the viral gene is a VA gene from an adenovirus, or an EBR gene from an Epstein Barr virus or a viral gene transcribed by RNA polymerase III from a Herpes virus.

En particulier, on peut citer le gène VAI ou VAII d'un Adénovirus, notamment l'Adénovirus 2.In particular, mention may be made of the VAI or VAII gene of an Adenovirus, in particular the Adenovirus 2.

Le gène VAI des Adénovirus a été choisi comme système pilote, à titre d'exemple de réalisation de l'invention, car il est particulièrement bien décrit dans la littérature. Cependant, l'ensemble des gènes viraux semblables au VAI transcrits par l'ARN Polymérase III peut également convenir.The VAI gene of the Adenoviruses was chosen as a pilot system, as an example of embodiment of the invention, because it is particularly well described in the literature. However, all of the VAI-like viral genes transcribed by RNA Polymerase III may also be suitable.

Comme vecteur approprié selon l'invention, on peut citer un vecteur réplicatif plasmidique ou épisomique ou un vecteur viral.As a suitable vector according to the invention, there may be mentioned a plasmid or episomal replicative vector or a viral vector.

En particulier, on utilisera un vecteur épisomique portant l'origine de réplication du virus Epstein Barr (oriP), ainsi que les séquences codantes pour la protéine EBNA-1.In particular, an episomal vector carrying the origin of replication of the Epstein Barr virus (oriP) will be used, as well as the sequences coding for the protein EBNA-1.

S'agissant du choix du vecteur, il est en effet, préférable de rester le plus proche possible du système "naturel" en le perturbant le moins possible. Pour cette raison, on préfère utiliser un vecteur se répliquant de manière autonome (épisome). Le recours à un vecteur à réplication épisomique peut être un bon moyen pour exprimer des antisens dans des cellules eucaryotes et tout particulièrement dans le lymphocyte T. Le clonage des gènes VA/antisens dans des vecteurs se répliquant sous forme épisomique en système eucaryote est particulièrement approprié. Ces vecteurs portent l'origine de réplication du virus Epstein Barr (OriP) ainsi que des séquences codantes pour la protéine Ebnal strictement nécessaire à la réplication de la molécule d'ADN portant Ori P.As regards the choice of the vector, it is in fact preferable to remain as close as possible to the "natural" system while disturbing it as little as possible. For this reason, it is preferable to use a vector which replicates autonomously (episome). The use of an episomal replicating vector may be a good means of expressing antisense in eukaryotic cells and in particular in the T lymphocyte. The cloning of the VA / antisense genes into vectors replicating in episomal form in the eukaryotic system is particularly suitable. . These vectors carry the origin of replication of the Epstein Barr virus (OriP) as well as coding sequences for the Ebnal protein strictly necessary for the replication of the DNA molecule carrying Ori P.

On note une plus grande efficacité de fonctionnement de la polymérase III sur des épisomes ainsi qu'une stimulation de l'activité transcriptionnelle en présence de la protéine E1 a. Ces propriétés sont mises à profit pour améliorer le système proposé.There is a greater operating efficiency of polymerase III on episomes as well as stimulation of transcriptional activity in the presence of the protein E1 a. These properties are used to improve the proposed system.

Le vecteur viral selon l'invention est de préférence un virus à ADN, mais peut également être un vecteur rétroviral à ARN ; il comportera alors le transcrit ARN de la cassette de transcription selon l'invention. Compte tenu du fait que l'infection d'une cellule par un rétrovirus entraîne la production d'un ADN proviral circularisé, c'est cet ADN proviral qui sera à son tour transcrit par l'ARN polymérase III conformément à l'invention, ceci n'excluant pas le fonctionnement de la construction génétique utilisée une fois que le DNA rétroviral est intégré.The viral vector according to the invention is preferably a DNA virus, but can also be a retroviral RNA vector; it will then include the RNA transcript of the transcription cassette according to the invention. Given the fact that infection of a cell by a retrovirus results in the production of circularized proviral DNA, it is this proviral DNA which will in turn be transcribed by RNA polymerase III according to the invention, this not excluding the functioning of the genetic construction used once the retroviral DNA is integrated.

Dans un mode de réalisation approprié selon l'invention, l'oligonucléotide est inséré dans les régions intermédiaires situées entre les boites A et B du gène VA.In an appropriate embodiment according to the invention, the oligonucleotide is inserted into the intermediate regions located between the boxes A and B of the VA gene.

Pour une application thérapeutique, de préférence, le gène VA est inactivé en ce qui concerne l'inhibition de l'action de l'interféron, par délétion ou mutation dans le gène VA des éléments de séquence critiques pour l'inactivation de la protéine kinase, DAI, induite par l'interféron.For a therapeutic application, preferably, the VA gene is inactivated as regards the inhibition of the action of interferon, by deletion or mutation in the VA gene of the elements of sequence critical for the inactivation of the protein kinase , DAI, induced by interferon.

Cette inactivation peut se faire par insertion directe de l'oligonucléotide dans les régions responsables de l'activité de l'inhibition de l'action de l'interféron, région décrite pour être dans le gène VA 1 de l'Adénovirus 2 entre et y compris les nucléotides 10672 et 10745. Par ce biais également, on optimise l'affinité de l'oligonucléotide pour la séquence-cible, compte tenu de la configuration spatiale de cette région en forme de boucle.This inactivation can be done by direct insertion of the oligonucleotide in the regions responsible for the activity of inhibiting the action of interferon, a region described to be in the VA 1 gene of Adenovirus 2 between and y including nucleotides 10672 and 10745. Also by this means, the affinity of the oligonucleotide for the target sequence is optimized, taking into account the spatial configuration of this loop-shaped region.

L'intégrité de la région centrale du gène VA des nucléotides 10694 à 10730 (boucle IV) est en effet critique pour le maintien de l'activité inhibitrice de l'ARN VA vis à vis de la P68 kinase. Cette région est située en dehors des zones régulatrices (boites A et B) et sa délétion n'affecte pas la transcription du gène VA.The integrity of the central region of the VA gene of nucleotides 10694 to 10730 (loop IV) is indeed critical for the maintenance of the inhibitory activity of VA RNA with respect to P68 kinase. This region is located outside the regulatory zones (boxes A and B) and its deletion does not affect the transcription of the VA gene.

Selon un premier mode de réalisation de la présente invention, on inactive l'activité naturelle du gène VA 1 de l'Adénovirus 2 par l'insertion de l'antisens dans la région centrale des nucléotides 10694 à 10730, plus particulièrement 10702 à 10728, ou à la place de cette région qui a été délétée.According to a first embodiment of the present invention, the natural activity of the VA 1 gene of the Adenovirus 2 is inactivated by the insertion of the antisense in the central region of nucleotides 10694 to 10730, more particularly 10702 to 10728, or in place of this region which has been deleted.

Cependant, afin de pouvoir construire des gènes chimères VA-antisens pour lesquels l'antisens est introduit en dehors de cette région, dans un autre mode de réalisation, on construit un gène VA délété de la région centrale (nucléotides 10702 à 10728). Pratiquement, La PCR "overlap" (figure 7) permet de réaliser ces délétions quand les oligonucléotides a' et b' sont espacés de la région a déléter. De plus, un site de restriction nouveau (EcoRV ; GATATC) peut être crée notamment par la juxtaposition des deux extrémités encadrant la délétion (GAT et ACC) grâce à la mutation du nucléotide 10729 (ACC remplacé par ATC). Ce site supplémentaire peut servir ultérieurement au clonage de séquences antisens ou ribozymiques en lieu et place de la boucle IV délétée. Ce gène est appelé VA delta IV.However, in order to be able to construct chimeric VA-antisense genes for which the antisense is introduced outside this region, in another embodiment, a VA gene deleted from the central region (nucleotides 10702 to 10728) is constructed. In practice, the "overlap" PCR (FIG. 7) allows these deletions to be carried out when the oligonucleotides a 'and b' are spaced from the region to be deleted. In addition, a new restriction site (EcoRV; GATATC) can be created in particular by the juxtaposition of the two ends framing the deletion (GAT and ACC) thanks to the mutation of nucleotide 10729 (ACC replaced by ATC). This additional site can be used later for the cloning of antisense or ribozymic sequences in place of the deleted IV loop. This gene is called VA delta IV.

Outre le site EcoRV nouvellement créé, d'autres régions du gène VA peuvent servir de sites d'insertion de séquences exogènes (par PCR overlap), et en particulier les régions correspondant aux boucles simple brin de l'ARN VA. L'insertion de séquences exogènes antisens dans une de ces régions ou à la place d'une de ces régions, celle-ci étant déletée, permet aux oligonucléotides rajoutés d'apparaître sur la structure secondaire comme des "extrusions" par rapport à l'axe principal de l'ARN VA. De ce fait, elles sont accessibles pour des ARN sens. On cite principalement, de 5' vers 3', les régions simples brins suivantes :

  • - boucle I, nucléotides de 10635 à 10639 (-TAAAT-), située entre les boites A et B.
  • - boucle III, nucléotides de 10682 à 10688 (-ATCCGGC-), située après la boite B.
  • - boucle V, nucléotides de 10733 à 10736 (-GGTG-)
In addition to the newly created EcoRV site, other regions of the VA gene can serve as sites for the insertion of exogenous sequences (by PCR overlap), and in particular the regions corresponding to the single-stranded loops of the VA RNA. The insertion of exogenous antisense sequences into one of these regions or in place of one of these regions, the latter being deleted, allows the added oligonucleotides to appear on the secondary structure as "extrusions" with respect to the main axis of VA RNA. As a result, they are accessible for sense RNAs. We quote mainly, from 5 'to 3', the following single-strand regions:
  • - loop I, nucleotides from 10635 to 10639 (-TAAAT-), located between boxes A and B.
  • - loop III, nucleotides from 10682 to 10688 (-ATCCGGC-), located after box B.
  • - loop V, nucleotides from 10733 to 10736 (-GGTG-)

Par ailleurs, l'extrémité terminale du gène VA delta -IV peut également être utilisée comme un site d'insertion. Les séquences ajoutées sont alors placées juste en amont de la séquence stop (-TTTT-) et définissent un prolongement par rapport à la molécule VA. Le site unique Eco47111 (-AGC/GCT) de nucléotides 10758 à 10763 peut être utilisé à cette fin.Furthermore, the terminal end of the VA delta -IV gene can also be used as an insertion site. The added sequences are then placed just upstream of the stop sequence (-TTTT-) and define an extension with respect to the VA molecule. The unique Eco47111 site (-AGC / GCT) of nucleotides 10758 to 10763 can be used for this purpose.

Dans un mode de réalisation particulier, l'oligonucléotide est inséré au niveau du nucléotide 10711 du gène VAI de l'Adénovirus 2 représenté Figure 1.In a particular embodiment, the oligonucleotide is inserted at the level of nucleotide 10711 of the VAI gene of the Adenovirus 2 represented in FIG. 1.

De préférence, l'oligonucléotide selon l'invention comporte de 15 à 40 nucléotides, de préférence encore 15 à 25.Preferably, the oligonucleotide according to the invention comprises from 15 to 40 nucleotides, more preferably still 15 to 25.

Dans le cadre d'une application thérapeutique, l'oligonucléotide pourra correspondre a une molécule ARN anti-sens ou à une structure d'ARN ribozymique.In the context of a therapeutic application, the oligonucleotide may correspond to an antisense RNA molecule or to a ribozymic RNA structure.

Dans le but d'améliorer l'efficacité d'hybridation entre la molécule ARN antisens et son substrat, de nombreux travaux sont actuellement orientés vers la recherche de séquences cibles correctement définies en termes de paramètres d'hybridation (affinité, accessibilité).In order to improve the efficiency of hybridization between the antisense RNA molecule and its substrate, many studies are currently directed towards the search for target sequences correctly defined in terms of hybridization parameters (affinity, accessibility).

Les séquences ribozymiques (25) sont des séquences consensus minimales requises pour qu'une molécule d'ARN soit capable d'hydrolyser une autre molécule d'ARN suivant un mode catalytique. Ces ribonucléotides à activité catalytique (ribozymes) sont capables de cliver un ARN cible sur lequel ils sont hybridés de manière spécifique (grâce à deux séquences de 15 nucléotides complémentaires à l'ARN cible et placées de part et d'autre de la séquence catalytique). Ces séquences ribozymiques comparables à de "super antisens" peuvent être utilisées avec profit dans notre système en augmentant l'efficacité fonctionnelle de l'ensemble.Ribozyme sequences (25) are minimum consensus sequences required for one RNA molecule to be able to hydrolyze another RNA molecule in a catalytic fashion. These catalytically active ribonucleotides (ribozymes) are capable of cleaving a target RNA on which they are specifically hybridized (thanks to two sequences of 15 nucleotides complementary to the target RNA and placed on either side of the catalytic sequence) . These ribozymic sequences comparable to "super antisense" can be used with profit in our system by increasing the functional efficiency of the whole.

Par ailleurs, le gène VA est de petite taille (160 nucléotides pour VA 1 de l'adénovirus 2). Cela permet selon la présente invention d'utiliser de manière simultanée plusieurs gènes VA-antisens portés par une même construction génétique. Le but recherché est de définir des "cocktails" antisens, (par exemple dans le cas du VIH utilisation concomitante de trois gènes différents; anti-rev, anti-tat et anti-signal d'encapsidation). Ces constructions génétiques multiples présentent deux avantages importants :

  • - additivité des gènes et donc augmentation de la concentration intracellulaire des ARN antisens.
  • - multiplicité des séquences cibles et donc meilleure efficacité de fonctionnement.
Furthermore, the VA gene is small (160 nucleotides for VA 1 of the adenovirus 2). This allows according to the present invention to simultaneously use several VA-antisense genes carried by the same genetic construction. The aim is to define antisense "cocktails" (for example in the case of HIV concomitant use of three different genes; anti-rev, anti-tat and anti-packaging signal). These multiple genetic constructions have two important advantages:
  • - additivity of genes and therefore increase of the intracellular concentration of antisense RNA.
  • - multiplicity of target sequences and therefore better operating efficiency.

De plus, dans le cas de virus dotés d'une forte variabilité génétique et qui "s'adaptent" au traitement utilisé, le recours à l'utilisation de plusieurs séquences antisens permet d'éviter l'emergence de variants génétiques.In addition, in the case of viruses endowed with a strong genetic variability and which "adapt" to the treatment used, the recourse to the use of several antisense sequences makes it possible to avoid the emergence of genetic variants.

La présente invention a donc aussi pour objet un vecteur comportant plusieurs gènes viraux identiques ou différents transcrits par l'ARN polymérase III dans lequel on a inséré un oligonucléotide identique ou différent en dehors des boites A et B de chacun desdits gènes viraux.The present invention therefore also relates to a vector comprising several identical or different viral genes transcribed by RNA polymerase III into which an identical or different oligonucleotide has been inserted outside the boxes A and B of each of said viral genes.

La présente invention a également pour objet un procédé de production intracellulaire d'un fragment d'ARN in vitro ou in vivo dans lequel on transfecte ou infecte des cellules eucaryotes comportant de l'ARN polymérase III avec un vecteur réplicatif selon l'invention, comportant comme oligonucléotide un fragment d'ADN correspondant au transcrit inverse dudit ARN et en ce que l'on cultive dans un milieu de culture approprié les cellules eucaryotes ainsi transfectées ou infectées.The present invention also relates to a process for the intracellular production of an RNA fragment in vitro or in vivo in which eukaryotic cells comprising RNA polymerase III are transfected or infected with a replicative vector according to the invention, comprising as an oligonucleotide a DNA fragment corresponding to the reverse transcript of said RNA and in that the eukaryotic cells thus transfected or infected are cultured in an appropriate culture medium.

La présente invention a en outre également pour objet, comme on l'a vu, l'utilisation à titre de médicament, d'un vecteur selon l'invention, dans lequel l'oligonucléotide est transcrit en une molécule ARN "antisens" ou une molécule d'ARN ribozymique bloquant l'expression d'un gène impliqué dans une pathologie en s'hybridant et, le cas échéant, en coupant son ARN messager d'origine cellulaire virale, bactérienne ou parasitaire.The present invention also further relates, as we have seen, to the use, as a medicament, of a vector according to the invention, in which the oligonucleotide is transcribed into an RNA molecule "antisense" or a ribozymal RNA molecule blocking the expression of a gene involved in a pathology by hybridizing and, if necessary, by cutting its messenger RNA of viral, bacterial or parasitic cell origin.

Le médicament selon l'invention peut être utilisé comme agent antiviral, antitumoral, antibiotique ou antiparasitaire, ou dans toute pathologie où un gène est anormalement exprimé soit par mutation, soit par dérégulation.The medicament according to the invention can be used as an antiviral, antitumor, antibiotic or antiparasitic agent, or in any pathology where a gene is abnormally expressed either by mutation or by deregulation.

La présente invention a également pour objet un procédé de blocage de l'expression d'un gène in vivo à l'aide d'un vecteur selon l'invention dont ledit oligonucléotide est transcrit en une molécule ARN antisens ou ribozymique qui s'hybride à, ou respectivement, coupe l'ARN messager dudit gène.The present invention also relates to a method for blocking the expression of a gene in vivo using a vector according to the invention, the said oligonucleotide of which is transcribed into an antisense or ribozymic RNA molecule which hybridizes to , or respectively, cuts the messenger RNA of said gene.

La présente invention a aussi comme objet un procédé de traitement de cellules ex vivo à l'aide d'un vecteur selon l'invention.The present invention also relates to a method of treating cells ex vivo using a vector according to the invention.

Dans ses applications thérapeutiques in vivo ou ex-vivo, on utilise de façon tout à fait appropriée un vecteur viral ou rétroviral qui pénètre dans la cellule par transfection ou infection. En particulier à titre de médicament selon l'invention, on utilise un vecteur constitué par un vecteur viral défectif tel qu'un adénovirus ou un vecteur rétroviral défectif tel qu'un rétrovirus murin.In its in vivo or ex-vivo therapeutic applications, a viral or retroviral vector which penetrates into the cell by transfection or infection is entirely appropriate. In particular as a medicament according to the invention, a vector is used consisting of a defective viral vector such as an adenovirus or a defective retroviral vector such as a murine retrovirus.

En effet, le vecteur utilisé pour véhiculer la construction génique selon l'invention vers sa cible théorique, peut être un vecteur rétroviral avec transport de la construction recombinante par une capside d'emprunt et insertion du matériel génétique dans le DNA de la cellule hôte.In fact, the vector used to convey the gene construction according to the invention to its theoretical target can be a retroviral vector with transport of the recombinant construction by a borrowing capsid and insertion of the genetic material into the DNA of the host cell.

Les techniques consistant à utiliser des vecteurs, notamment viraux, pour transporter et faire pénétrer du matériel génétique dans des cellules cibles et introduire de manière efficace des modifications génétiques dans divers tissus somatiques comme le muscle, le foie, le cerveau et les cellules hématopolëti- ques sont connues de l'homme de l'Art. En particulier, le tissu hématopoïétique (leucocytes, hématies, plaquettes...) présente deux caractéristiques essentielles qui font de ce tissu un bon candidat pour les approches de thérapie génique :

  • - les cellules sanguines sont aisément prélevables sans traumatisme pour le patient. De plus, les conditions de culture de ces cellules (utilisation de diverses cytokines) se sont affinées et permettent un maintien ex vivo pour des périodes de temps variables (congélation, culture).
  • - l'étude de la différenciation des différentes lignées composant le système hématopoïétique a permis de montrer que l'ensemble de ces lignées dérivent d'un progéniteur commun (Uchida N., Fleming W.H., Alpern E.J. and Weissman I.L. 1993 Current Opinion in Immunology, 5, 177-184). Cela permet d'introduire la modification génétique souhaitée dans des cellules souches qui, après réimplantation, sont capables de recoloniser en totalité le tissu hématopoïétique.
Techniques of using vectors, including viral vectors, to transport and penetrate genetic material into target cells and effectively introduce genetic changes in various somatic tissues such as muscle, liver, brain and hematopolitic cells are known to those skilled in the art. In particular, hematopoietic tissue (leukocytes, red blood cells, platelets, etc.) has two essential characteristics that make this tissue a good candidate for gene therapy approaches:
  • - blood cells are easily removed without trauma to the patient. In addition, the culture conditions of these cells (use of various cytokines) have been refined and allow ex vivo maintenance for variable periods of time (freezing, culture).
  • - the study of the differentiation of the different lines composing the hematopoietic system made it possible to show that all of these lines derive from a common progenitor (Uchida N., Fleming WH, Alpern EJ and Weissman IL 1993 Current Opinion in Immunology, 5, 177-184). This makes it possible to introduce the desired genetic modification into stem cells which, after reimplantation, are capable of completely recolonizing the hematopoietic tissue.

La caractérisation des cellules précurseurs a permis d'établir que la présence d'une protéine de surface (CD34) permet de les distinguer des autres types cellulaires comme étant des cellules CD34+.Characterization of the precursor cells has made it possible to establish that the presence of a surface protein (CD34) makes it possible to distinguish them from other cell types as being CD34 + cells.

A tous les stades de la différenciation, les cellules hématopoïétiques prolifèrent. De ce fait, l'introduction de gènes étrangers dans ces cellules impose que celui-ci ne soit pas "dilué" au cours des divisions cellulaires successives. Les rétrovirus, qui s'intègrent définitivement dans le génome de la cellule récipiente et pour lesquels le mécanisme moléculaire de réplication est relativement bien connu, apparaissent comme de bons candidats pour la thérapie génique des cellules hématopoïétiques.At all stages of differentiation, hematopoietic cells proliferate. Therefore, the introduction of foreign genes into these cells requires that it is not "diluted" during successive cell divisions. Retroviruses, which integrate definitively into the genome of the recipient cell and for which the molecular mechanism of replication is relatively well known, appear to be good candidates for hematopoietic cell gene therapy.

L'utilisation des vecteurs rétroviraux pour transporter du matériel génétique nécessite, d'une part, de réaliser la construction génétique du rétrovirus recombinant, et d'autre part, de disposer d'un système cellulaire qui assure la fonction d'encapsidation du matériel génétique à transporter :

  • - Dans un premier temps, les techniques de génie génétique permettent de modifier le génome d'un rétrovirus murin comme le virus de Moloney (rétrovirus murin appartenant au groupe des virus des leucémies murines : Reddy E.P., Smith M. J. and Aaronson S.A., 1981, Science. 214, 445-450). Le génome rétroviral est cloné dans un vecteur plasmidique puis délété de l'ensemble des séquences virales codant pour les protéines de structure (gènes : Gag, Env) ainsi que la séquence codant pour les activités enzymatiques (gène : Pol). De ce fait, seules les séquences nécessaires "en cis" pour la réplication, la transcription et l'intégration sont conservées (séquences correspondants aux deux régions LTR, signal d'encapsidation et signal de fixation de l'amorce). Les séquences génétiques délétées peuvent être remplacées par des gènes non viraux comme le gène de résistance à la néomycine (antibiotique de séléction pour les cellules eucaryotes) et par le gène à transporter par le vecteur rétroviral.
  • - Dans un second temps, la construction plasmidique ainsi obtenue est introduite par transfection dans les cellules d'encapsidation. Ces cellules expriment de manière constitutive les protéines virales Gag, Pol et Env, mais l'ARN codant pour ces protéines est dépourvu des signaux nécessaires à son encapsidation. De ce fait, cet ARN ne peut pas être encapsidé et permettre la formation de particules virales. Seul l'ARN recombinant, issu de la construction rétrovirale transfectée, est dotée du signal d'encapsidation et est encapsidée. Les particules rétrovirales produites par ce système contiennent l'ensemble des éléments nécessaires pour l'infection des cellules cibles (telles que les cellules CD34+) et pour l'intégration définitive du gène d'intérêt dans ces cellules. L'absence des gènes Gag, Pol, Env empêche le système de continuer à se propager.
The use of retroviral vectors to transport genetic material requires, on the one hand, to carry out the genetic construction of the recombinant retrovirus, and on the other hand, to have a cellular system which ensures the function of packaging of the genetic material. to carry :
  • - Initially, genetic engineering techniques make it possible to modify the genome of a murine retrovirus such as Moloney virus (murine retrovirus belonging to the group of murine leukemia viruses: Reddy EP, Smith MJ and Aaronson SA, 1981, Science . 214, 445-450). The retroviral genome is cloned into a plasmid vector and then deleted from all of the viral sequences coding for the structural proteins (genes: Gag, Env) as well as the sequence coding for the enzymatic activities (gene: Pol). Therefore, only the sequences necessary "in cis" for replication, transcription and integration are preserved (sequences corresponding to the two LTR regions, packaging signal and primer binding signal). The deleted genetic sequences can be replaced by non-viral genes such as the neomycin resistance gene (antibiotic for selection for eukaryotic cells) and by the gene to be transported by the retroviral vector.
  • - In a second step, the plasmid construction thus obtained is introduced by transfection into the packaging cells. These cells constitutively express the viral proteins Gag, Pol and Env, but the RNA coding for these proteins lacks the signals necessary for its packaging. Therefore, this RNA cannot be packaged and allow the formation of viral particles. Only the recombinant RNA, originating from the transfected retroviral construct, is endowed with the packaging signal and is packaged. The retroviral particles produced by this system contain all of the elements necessary for the infection of target cells (such as CD34 + cells) and for the definitive integration of the gene of interest into these cells. The absence of the Gag, Pol, Env genes prevents the system from continuing to spread.

Selon la présente invention les gènes VA-antisens ont comme caractéristique d'être transcrit par l'ARN Polymérase III. Cette particularité a conduit à développer deux types de constructions rétrovirales dans lesquelles les gènes VA-anti rev ont été clonés comme décrit à l'exemple 6.According to the present invention, the VA-antisense genes have the characteristic of being transcribed by RNA Polymerase III. This feature led to the development of two types of retroviral constructs in which the VA-anti rev genes were cloned as described in Example 6.

Les virus à ADN, tels que les adénovirus, peuvent également convenir à cette approche, bien que, dans ce cas, le maintien du DNA à l'état épisomique sous forme de réplicon autonome soit la situation la plus probable.DNA viruses, such as adenoviruses, may also be suitable for this approach, although in this case maintaining DNA in an episomal state as an autonomous replicon is the most likely situation.

Il va de soi que l'utilisation d'un vecteur viral, provenant d'un Adénovirus, est particulièrement adaptée lorsque le gène viral est un gène d'Adénovirus. Les adénovirus présentent certaines propriétés intérressan- tes. Notamment, ils ont un spectre d'hôte assez large, sont capables d'infecter des cellules quiescentes, et ils ne s'intègrent pas au génome de la cellule infectée. Pour ces raisons, les adénovirus ont déjà été utilisés pour le transfert de gènes in vivo. A cet effet, différents vecteurs dérivés des adénovirus ont été préparés, incorporant différents gènes (bêta-gal, OTC, alpha-lAt, cytokines, etc). Pour limiter les risques de multiplication et la formation de particules infectieuses in vivo, les adénovirus utilisés sont généralement modifiés de manière à les rendre incapables de réplication dans la cellule infectée.It goes without saying that the use of a viral vector, originating from an Adenovirus, is particularly suitable when the viral gene is an Adenovirus gene. Adenoviruses have certain interesting properties. In particular, they have a fairly broad host spectrum, are capable of infecting quiescent cells, and they do not integrate into the genome of the infected cell. For these reasons, adenoviruses have already been used for gene transfer in vivo. To this end, different vectors derived from adenoviruses have been prepared, incorporating different genes (beta-gal, OTC, alpha-1At, cytokines, etc.). To limit the risks of multiplication and the formation of infectious particles in vivo, the adenoviruses used are generally modified so as to render them incapable of replication in the infected cell.

Ainsi, les adénovirus utilisés sont généralement délétés des régions E1 (E1 a et/ou E 1 b) et éventuellement E3.Thus, the adenoviruses used are generally deleted from the E1 regions (E1 a and / or E 1 b) and possibly E3.

Les adénovirus recombinants défectifs selon l'invention peuvent être préparés par toute technique connue de l'homme du métier (Levrero et al., Gene 101 (1991) 195, EP 185 573; Graham, EMBO J.3 (1984) 2917). En particulier, ils peuvent être préparés par recombinaison homologue entre un adénovirus et un plasmide dans une lignée cellulaire appropriée. La lignée cellulaire utilisée doit de préférence (i) être transformable par lesdits éléments, et (ii), comporter les séquences capables de complémenter la partie du gènome de l'adénovirus défectif, de préférence sous forme intégrée pour éviter les risques de recombinaison. A titre d'exemple de lignée, on peut mentionner la lignée de rein embryonnaire humain 293 (Graham et al., J. Gen. Virol 36 (1977) 59) qui contient notamment, intégrée dans son génome, la partie gauche du génome d'un Adénovirus Ad5 (12%).The defective recombinant adenoviruses according to the invention can be prepared by any technique known to a person skilled in the art (Levrero et al., Gene 101 (1991) 195, EP 185 573; Graham, EMBO J.3 (1984) 2917). In particular, they can be prepared by homologous recombination between an adenovirus and a plasmid in an appropriate cell line. The cell line used must preferably (i) be transformable by said elements, and (ii), contain the sequences capable of complementing the part of the defective adenovirus genome, preferably in integrated form to avoid the risks of recombination. As an example of a line, mention may be made of the human embryonic kidney line 293 (Graham et al., J. Gen. Virol 36 (1977) 59) which contains in particular, integrated into its genome, the left part of the genome d '' Adenovirus Ad5 (12%).

Ensuite les adénovirus qui se sont multipliés sont récupérés et purifiés selon les techniques classiques de biologie moléculaire.Then the adenoviruses which have multiplied are recovered and purified according to conventional molecular biology techniques.

Selon la présente invention, dans le génome de l'adénovirus recombinant déféctif est insérée, au niveau du gène VA, une séquence d'ADN exogène notamment codant pour un ARN antisens.According to the present invention, in the genome of the defective recombinant adenovirus is inserted, at the level of the VA gene, an exogenous DNA sequence in particular coding for an antisense RNA.

Les compositions pharmaceutiques comprenant un ou plusieurs vecteur virus tels que des recombinants déféctifs comme décrits précédemment peuvent être formulées en vue d'une administration par voie topique, orale, parentérale, intranasale, intraveineuse, intramusculaire, sous-cutanée, intraoculaire, etc. Préférentiellement, elles contiennent des véhicules pharmaceutiquement acceptables pour une formulation injectable. Il peut s'agir en particulier de solutions salines (phosphate monosodique, disodique, chlorure de sodium, potassium, calcium ou magnésium, etc, ou des mélanges de tels sels) stériles, isotoniques, ou de composition sèches, notamment lyophilisées, qui, par addition selon le cas d'eau stérilisée ou de sérum physiologique, permettent la constitution de solutés injectables particuliers de solutions stériles, isotoniques, ou de compositions sèches, notamment lyophilisées, qui par addition selon le cas d'eau stérilisé&e ou de sérum physiologique, permettent la constitution de solutés injectables.Pharmaceutical compositions comprising one or more virus vectors such as defective recombinants as described above can be formulated for topical, oral, parenteral, intranasal, intravenous, intramuscular, subcutaneous, intraocular, etc. administration. Preferably, they contain pharmaceutically acceptable vehicles for an injectable formulation. They may in particular be saline solutions (monosodium phosphate, disodium, chloride of sodium, potassium, calcium or magnesium, etc., or mixtures of such salts) sterile, isotonic, or of dry composition, in particular lyophilized, which, by addition according to the case of sterilized water or physiological saline, allow the constitution of solutes particular injectables of sterile, isotonic solutions, or dry compositions, in particular lyophilized, which by addition, as the case may be, of sterilized water or physiological saline, allow the constitution of injectable solutes.

Les doses de virus recombinant défectif utilisés pour l'injection peuvent être adaptées en fonction de différents paramètres, et notamment en fonction du mode d'administration utilisé, de la pathologie concernée, du gène à exprimer, ou encore de la durée du traitement recherchée. D'une manière générale, les virus recombinants selon l'invention peuvent être formulés et administrés sous forme de doses comprises entre 10 et 10 pfu/ml, et de préférence 10 à 10 pfu/ml. Le terme pfu ("plaque forming unit") correspond au pouvoir infectieux d'une solution de virus, et est déterminé par infection d'une culture cellulaire appropriée, et mesure, généralement après 48 heures, du nombre de plages de cellules infectées. Les techniques de détermination du titre pfu d'une solution virale sont bien documentées dans la littérature.The doses of defective recombinant virus used for injection can be adapted as a function of various parameters, and in particular as a function of the mode of administration used, of the pathology concerned, of the gene to be expressed, or even of the duration of the treatment sought. In general, the recombinant viruses according to the invention can be formulated and administered in the form of doses of between 10 and 10 pfu / ml, and preferably 10 to 10 pfu / ml. The term pfu ("plaque forming unit") corresponds to the infectious power of a virus solution, and is determined by infection of an appropriate cell culture, and measures, generally after 48 hours, the number of plaques of infected cells. The techniques for determining the pfu titer of a viral solution are well documented in the literature.

L'utilisation de virus modifiés génétiquement comme système navette pour transporter le matériel génétique modifié permet non seulement de faire pénétrer le matériel génétique dans la cellule récipiente par le biais de l'utilisation d'une capside virale d'emprunt, mais permet également de traiter de manière simultanée, et sur une courte période de temps, un grand nombre de cellules ; ceci ouvre la voie à des approches curatives s'adressant in vitro à des cellules déjà infectées par le virus à inhiber, mais permet également le traitement thérapeutique appliqué à l'organisme entier.The use of genetically modified viruses as a shuttle system to transport the modified genetic material not only allows the genetic material to enter the recipient cell through the use of a borrowing viral capsid, but also makes it possible to treat simultaneously, and over a short period of time, a large number of cells; this opens the way to curative approaches aimed in vitro at cells already infected with the virus to be inhibited, but also allows the therapeutic treatment applied to the whole organism.

Selon l'invention, on peut utiliser des transactivateurs viraux. En particulier, la protéine E1 d'Adénovirus stimule l'activité transcriptionnelle de la polymérase III (23), notamment en mobilisant le facteur TFIIIC limitant. Cet effet potentialisateur de la polymérase III est surtout observé si l'ADN porteur du gène VA est sous forme épisomique (cas fréquent pour les Adénovirus). On peut utiliser cette propriété de la protéine E1A pour stimuler l'efficacité du système "VA-ARN polymérase III" surtout au cours d'expériences d'expression transitoire, soit avec le gène E1 a cloné en cis du gène VA-ARN, soit en trans par cotransfection.According to the invention, viral transactivators can be used. In particular, the protein E1 of Adenovirus stimulates the transcriptional activity of polymerase III (23), in particular by mobilizing the limiting factor TFIIIC. This potentiating effect of polymerase III is especially observed if the DNA carrying the VA gene is in episomal form (frequent case for Adenoviruses). This property of the E1A protein can be used to stimulate the efficiency of the "VA-RNA polymerase III" system, especially during transient expression experiments, either with the E1 gene cis-cloned by the VA-RNA gene, or in trans by cotransfection.

Egalement, la protéine Tat du HIV pourrait stimuler l'activité transcriptionnelle de la polymérase III.Also, the Tat protein of HIV could stimulate the transcriptional activity of polymerase III.

L'utilisation des transactivateurs viraux couplée avec la vectorisation de l'antisens peut être mise à profit selon l'invention, en matière de spécifité d'action vis à vis de cellules infectées par le HIV (ou d'autres virus pathogènes). Deux stratégies complémentaires peuvent être appliquées:

  • - Dans le but de conférer une "immunité cellulaire" à des cellules permissives à l'infection HIV (CD4+), le traitement est réalisé "ex-vivo" par le prélèvement de cellules souches issues de la moelle, leur tri et leur modification génétique "ex-vivo " ;
  • - Une stratégie "curative" est également possible grâce à l'instauration d'une dépendance de la réplication du vecteur pour la présence de la protéine Tat du HIV. Cette dépendance permet de répliquer efficacement le vecteur uniquement dans des cellules infectées par le virus.
The use of viral transactivators coupled with the vectorization of the antisense can be used according to the invention, in terms of specificity of action with respect to cells infected with HIV (or other pathogenic viruses). Two complementary strategies can be applied:
  • - In order to confer "cellular immunity" to cells permissive to HIV infection (CD4 +), the treatment is carried out "ex-vivo" by the removal of stem cells from the marrow, their sorting and their genetic modification "ex-vivo";
  • - A "curative" strategy is also possible thanks to the establishment of a dependence on vector replication for the presence of the Tat protein of HIV. This dependence makes it possible to efficiently replicate the vector only in cells infected with the virus.

La mise au point et le développement de cassettes antisens selon l'invention, adaptables à de nombreux sujets de recherche sont envisagés dans de très nombreux domaines dont notamment l'oncologie moléculaire, le déterminisme cellulaire.The development and development of antisense cassettes according to the invention, adaptable to many research subjects are envisaged in very numerous fields including in particular molecular oncology, cellular determinism.

D'autres caractéristiques et avantages de la présente invention apparaîtront à la lumière de la description détaillée du mode de réalisation suivant.Other characteristics and advantages of the present invention will appear in the light of the detailed description of the following embodiment.

La Figure 1 représente la séquence nucléotidique du gène VAI de l'Adénovirus 2.Figure 1 represents the nucleotide sequence of the VAI gene of Adenovirus 2.

LEGENDE de la figure 1:CAPTION of Figure 1:

Figure imgb0001
Figure imgb0001

  • La Figure 2 représente des séquences antisens et random insérées au nucléotide 10711 du gène VAI.Figure 2 shows antisense and random sequences inserted at nucleotide 10711 of the VAI gene.
  • La Figure 3 représente l'analyse sur gel d'acrylamide/urée des produits de transcription acellulaire des constructions PVV2/VAI/antisens.FIG. 3 represents the analysis on acrylamide / urea gel of the acellular transcripts of the PVV2 / VAI / antisense constructs.
  • La Figure 4 représente la cinétique d'infection par HIV de CEM transfectées ou non par un antisens.FIG. 4 represents the kinetics of HIV infection of EMFs transfected or not with an antisense.
  • La Figure 5 représente le dosage des antigènes HIV présents dans les surnageants des cellules CEM transfectées par des constructions antisens.FIG. 5 represents the assay of the HIV antigens present in the supernatants of the CEM cells transfected with antisense constructs.

Les dosages d'antigènes HIV ont été effectués 5 heures après renouvellement du surnageant de culture et 24 jours après le début de l'infection.The assays for HIV antigens were carried out 5 hours after renewal of the culture supernatant and 24 days after the start of the infection.

Des structures secondaires des VA-ARN : la structure VA-ARNI (A) et deux structures possibles pour les VA-ARNI (B et C) sont décrits dans la référence 13.Secondary structures of VA-RNA: the structure VA-RNAI (A) and two possible structures for VA-RNAI (B and C) are described in reference 13.

  • La figure 6 représente la structure secondaire du gène VA I.FIG. 6 represents the secondary structure of the VA I gene.
  • La Figure 7 représente le schéma d'insertion d'un oligonucléotide par méthode PCR "overlap".Figure 7 shows the diagram of insertion of an oligonucleotide by PCR method "overlap".
  • La Figure 8 représente l'expression du VA-antisens dans la population AS10 Figure 8 shows the expression of VA-antisense in the AS 10 population
  • piste a : ARN de cellules de la population AS10 lane a: RNA of cells from the AS 10 population
  • piste b : ARN de cellules de la lignée HepG2 infectée par l'Adénovirus de type 2.lane b: RNA from cells of the HepG 2 line infected with type 2 adenovirus.
  • La figure 9 présente des résultats de Northern-Blot des ARN transcrits à partir d'un plasmide portant les gènes VA-anti rev et VA-anti tat obtenus à l'exemple 5 avec la construction portant le gène rev et le gène tat.FIG. 9 presents Northern-Blot results of the RNAs transcribed from a plasmid carrying the VA-anti rev and VA anti-tat genes obtained in Example 5 with the construct carrying the rev gene and the tat gene.
  • La figure 10 représente la construction des vecteurs rétroviraux 1 et Il dérivés du vecteur pMV7 de l'exemple 6.FIG. 10 represents the construction of the retroviral vectors 1 and II derived from the vector pMV7 of Example 6.
  • La figure 11 représente l'expression transitoire des gènes VA 1 modifiés de l'exemple 7 dans des cellules 293.FIG. 11 represents the transient expression of the VA 1 genes modified from Example 7 in 293 cells.
Exemple 1 : Clonage du gène VAIEXAMPLE 1 Cloning of the VAI Gene

Le gène choisi pour les expériences proposées ci-après est le gène VA-ARNI de l'Adénovirus 2. La séquence de l'Adénovirus est disponibles dans la banque de données : Genbank - réf.: ADBVAI séquences transcrites du nucléotide 10610 au nucléotide 10769 (la figure 1 présente les éléments de séquence concernés). La conformation de l'ARN en solution est publiée et présentée dans la Figure 6 (13,14).The gene chosen for the experiments proposed below is the VA-RNAI gene of Adenovirus 2. The sequence of Adenovirus is available in the database: Genbank - ref .: ADBVAI sequences transcribed from nucleotide 10610 to nucleotide 10769 (Figure 1 shows the sequence elements involved). The conformation of the RNA in solution is published and presented in Figure 6 (13,14).

Le clonage du gène VAI recombinant est réalisé dans un vecteur plasmidique de type PVV2 (15) porteur en cis du gène de résistance à la généticine (sous dépendance du promoteur TK) ou dans un vecteur à réplication autonome en système eucaryote du type pCEP-4 (commercialisé par Invitrogen) ou encore pHEBo (aimablement fourni par R.P. SEKALY, laboratoire d'Immunologie, Montréal). Ces derniers vecteurs sont porteurs des régions OriP et Ebna-1 et ils portent également le gène de résistance à l'hygromycine (16,17).The cloning of the recombinant VAI gene is carried out in a plasmid vector of the PVV2 type (15) carrying in cis the gene for resistance to geneticin (under dependence of the TK promoter) or in a vector with autonomous replication in eukaryotic system of the pCEP-4 type. (marketed by Invitrogen) or pHEBo (kindly provided by RP SEKALY, laboratory of Immunology, Montreal). These latter vectors carry the OriP and Ebna-1 regions and they also carry the hygromycin resistance gene (16,17).

Le gène VAI de l'Adénovirus 2 a été cloné après une étape d'amplification par PCR. Les oligonucléotides servant à cette PCR ont été choisis du coté 5' en amont du site de début de transcription du gène VAI et du coté 3' en aval du site TTTT de terminaison (Fig. 1). Les extrémités 5' de chaque oligonucléotide sont dotées du site de coupure enzymatique Clal, site unique sur le plasmide pVV2, ou bien du site Hindlll pour le clonage sur le plasmide pHEBo. La transformation de bactéries par des constructions "pVV2-VAI" a permis d'obtenir plusieurs clones recombinants.The Adenovirus 2 VAI gene was cloned after a PCR amplification step. The oligonucleotides used for this PCR were chosen on the 5 ′ side upstream of the transcription start site of the VAI gene and on the 3 ′ side downstream of the termination TTTT site (FIG. 1). The 5 ′ ends of each oligonucleotide are provided with the Clal enzymatic cleavage site, a unique site on the plasmid pVV2, or else with the Hindlll site for cloning on the plasmid pHEBo. The transformation of bacteria with "pVV2-VAI" constructs made it possible to obtain several recombinant clones.

Exemple 2 : Insertion et clonage des séquences antisensExample 2: Insertion and cloning of the antisense sequences

Pour le HIV, la séquence des oligonucléotides à insérer a été déterminée dans un premier temps conformément aux séquences antisens déjà publiées par d'autres auteurs : anti-rev (18) ou anti-tat (19) et séquence aléatoire servant de contrôle spécifique (voir Fig. 2) (les protéines tat et rev sont deux protéines virales dont le rôle régulateur est critique pour la réplication du virus).For HIV, the sequence of oligonucleotides to be inserted was first determined in accordance with the antisense sequences already published by other authors: anti-rev (18) or anti-tat (19) and random sequence serving as specific control ( see Fig. 2) (tat and rev proteins are two viral proteins whose regulatory role is critical for virus replication).

Le recours à des séquences de type ribozyme, est actuellement en cours, avec clonage des recombinants porteurs de séquences ribozymiques publiées par Goodchild & Kohli en 1991 (20).The use of ribozyme-type sequences is currently in progress, with the cloning of recombinants carrying ribozyme sequences published by Goodchild & Kohli in 1991 (20).

L'utilisation de la PCR "overlap" (voir Figure 7) a permis d'insérer des oligonucléotides de taille variable dans le gène VAI. Les antisens "anti-rev", "anti-tat" et "random" ont été insérés au niveau du nucléotide 10711 de la séquence du VA-ARNI (Fig. 2). Les gènes VAI ainsi modifiés par l'insertion de la séquence antisens sont clonés dans le site Clal du plasmide pVV2 comme décrit précédemment.The use of "overlap" PCR (see FIG. 7) has made it possible to insert oligonucleotides of variable size into the VAI gene. The "anti-rev", "anti-tat" and "random" antisense were inserted at nucleotide 10711 of the VA-RNAI sequence (FIG. 2). The VAI genes thus modified by the insertion of the antisense sequence are cloned into the ClaI site of the plasmid pVV2 as described above.

Les constructions obtenues ont toutes été séquencées (sur 200 nucléotides) puis testées en système de transcription acellulaire pour s'assurer de la fonctionnalité ainsi que de l'efficacité relative de transcription de chaque construction. Pour la mise au point des transcriptions in vitro, le protocole suivi est celui décrit par Wu (21) et Weil (22). Brièvement, 3µg d'ADN à tester sont incubés 90 min à 29 ° C en présence d'extraits cellulaires contenant l'activité polymérase III et de nucléotides dont notamment de alpha-p32- dGTP. Après synthèse, les produits de la réaction sont analysés sur gel d'acrylamide (la Figure 3 présente le type de résultats obtenus). Les tailles observées correspondent bien aux tailles attendues pour chaque construction, a savoir : VA-ARNI natif 160 nucléotides, VA-ARNI/anti-rev 188, VA-ARNI/anti-tat 190. Les autres constructions VA-ARNI/ribozymes ne sont pas encore analysées.The constructions obtained were all sequenced (on 200 nucleotides) and then tested in a cell-free transcription system to ensure the functionality as well as the relative transcription efficiency of each construction. For the development of in vitro transcriptions, the protocol followed is that described by Wu (21) and Weil (22). Briefly, 3 μg of DNA to be tested are incubated for 90 min at 29 ° C. in the presence of cell extracts containing polymerase III activity and of nucleotides, in particular of alpha- p32- dGTP. After synthesis, the reaction products are analyzed on acrylamide gel (Figure 3 shows the type of results obtained). The sizes observed correspond well to the sizes expected for each construct, namely: native VA-ARNI 160 nucleotides, VA-RNAI / anti-rev 188, VA-RNAI / anti-state 190. The other VA-RNAI / ribozyme constructions are not not yet analyzed.

Il est bien vérifié que l'insertion de séquence exogènes dans le gène VA n'affecte pas son taux de transcrition par la Polymérase III.It is well verified that the insertion of exogenous sequences into the VA gene does not affect its rate of transcription by Polymerase III.

Exemple 3 : Inhibition de la réplication viraleEXAMPLE 3 Inhibition of Viral Replication

La mise au point et le développement des outils antisens sont réalisés, dans le cas d'antisens antiviraux, sur les lignées cellulaires permissives pour la réplication du virus étudié. Par exemple, pour les antisens anti-HIV, les lignées lymphoblastoïdes CEM ou MOLT-4, toutes deux bonnes productrices de virus, sont choisies.The development and development of antisense tools are carried out, in the case of antiviral antisense, on permissive cell lines for the replication of the virus studied. For example, for anti-HIV antisense, the CEM or MOLT-4 lymphoblastoid lines, both good virus producers, are chosen.

Les cellules de la lignée CEM (débarrassées de mycoplasmes) ont été transfectées par les différents plasmides recombinants (pVV2/VAI/anti-rev, pVV2/VAI/anti-tat, pVV2/VAI et pVV2 témoin. Les techniques de transfection cellulaire utilisées dépendent du modèle cellulaire étudié.The cells of the CEM line (free of mycoplasmas) were transfected with the various recombinant plasmids (pVV2 / VAI / anti-rev, pVV2 / VAI / anti-tat, pVV2 / VAI and control pVV2. The cell transfection techniques used depend on of the cell model studied.

Pour les cellules en suspension, on a utilisé préférentiellement l'électroporation (Appareil de type Gene Pulser (R), Biorad, les chocs électriques sont produits à 200V et 960 µF).For suspended cells, electroporation was preferably used (Gene Pulser (R) type device, Biorad, electric shocks are produced at 200V and 960 µF).

Après transfection, les cellules transduites sont réparties dans 96 puits de culture indépendants et sélectionnées par action des antibiotiques généticine 1.5 mg/ml (plasmide pVV2) ou hygromycine 400 ug/ml (plasmide pHEBo). Le maintien de la pression de sélection reste nécessaire tout au long des expériences. A ce jour, en utilisant l'électroporation, la lignée CEM a été transfectée par des constructions recombinantes du plasmide pVV2/anti-rev, pVV2/anti-tat, pVV2/VAI et pVV2.After transfection, the transduced cells are distributed in 96 independent culture wells and selected by the action of antibiotics geneticin 1.5 mg / ml (plasmid pVV2) or hygromycin 400 ug / ml (plasmid pHEBo). Maintaining the selection pressure remains necessary throughout the experiments. To date, using electroporation, the CEM line has been transfected with recombinant constructs of the plasmid pVV2 / anti-rev, pVV2 / anti-tat, pVV2 / VAI and pVV2.

Des populations cellulaires non clonales, résistantes à la généticine, issues de puits de culture différents, sont sélectionnées sur la base d'une bonne multiplication cellulaire avec un faible taux de mortalité. Les populations cellulaires issues de la transfection avec des plasmides "anti-sens" sont numérotées AS indice X (AS : AntiSens, X n ° du puits de sélection).Non-clonal, genetic-resistant cell populations from different culture wells are selected on the basis of good cell multiplication with a low mortality rate. The cell populations resulting from the transfection with “anti-sense” plasmids are numbered AS index X (AS: AntiSens, X n ° of the selection well).

Chaque population est infectée par du surnageant infectieux provenant de cellules chroniquement infectées par le virus HIV (surnageant riche en particules), la souche utilisée ne présente pas d'effet cytopathique sur les cellules utilisées (souche LAV/BRU, JC Cherman, Marseille). La cinétique de réplication virale montre que, dans les conditions habituelles, plus de 95% des CEM produisent des particules virales 7 à 8 jours après l'infection (Figure 4).Each population is infected with an infectious supernatant originating from cells chronically infected with the HIV virus (supernatant rich in particles), the strain used does not have a cytopathic effect on the cells used (strain LAV / BRU, JC Cherman, Marseille). The kinetics of viral replication show that, under usual conditions, more than 95% of EMFs produce viral particles 7 to 8 days after infection (Figure 4).

La mesure de la réplication virale est estimée par immunofluorescence indirecte. Brièvement, 5000 cellules sont fixées sur lames de verre et incubées 30 min. en présence d'un sérum anti-HIV provenant d'un patient séropositif dilué au 1/40. La révélation est effectuée grâce à l'utilisation d'un deuxième anticorps, spécifique pour les immunoglobines humaines, conjugué à l'isothiocyanate de fluorescéïne (FITC).The measurement of viral replication is estimated by indirect immunofluorescence. Briefly, 5000 cells are fixed on glass slides and incubated for 30 min. in the presence of an anti-HIV serum from a seropositive patient diluted 1/40. The revelation is carried out through the use of a second antibody, specific for human immunoglobins, conjugated to fluorescein isothiocyanate (FITC).

La réplication virale peut être également mesurée par le dosage de la concentration d'antigènes HIV-1 présents dans le surnageant de culture (dosage réalisé avec le kit HIVAG-1(R) de ABBOT). Les cinétiques d'infection sont réalisées de manière simultanée sur les cellules transfectées par les différents plasmides et issues de la sélection par la généticine.Viral replication can also be measured by assaying the concentration of HIV-1 antigens present in the culture supernatant (assay carried out with the HIVAG-1 (R) kit from ABBOT). The kinetics of infection are carried out simultaneously on the cells transfected with the different plasmids and resulting from selection by geneticin.

La Figure 4 présente les résultats obtenus en infectant de manière comparative la lignée CEM servant de témoin positif, la lignée CEM résistante à la généticine (CEM.gén.r.) transfectée par le pVV2), 2 populations "anti-tat" (AS1 et AS2) et 2 populations "anti-rev" (AS3 et AS4). La mesure de la réplication virale a été suivie par l'observation et le comptage du nombre de cellules positives HIV détectées par immunofluorescence indirecte à différents jours après l'infection : La superposition des courbes "CEM" et "CEM gén.r." montre que la présence de généticine dans le milieu n'affecte pas l'infection des cellules CEM par le virus HIV. Il apparaît que les 4 populations "antisens" testées présentent un retard significatif pour le démarrage de l'infection, la période d'éclipse est prolongée de 2 jours pour AS1 et jusqu'à 6 jours dans le cas de AS3. De plus, un faible pourcentage de cellules sont infectées pour certaines lignées (AS2, AS3, AS4) (25 à 60%) même tardivement après l'infection traduisant la résistance à l'infection virale d'un grand nombre de cellules au sein de ces populations non clonées. Ceci n'est pas le cas de la lignée AS1 qui présente plus de 95% de cellules positives 10 jours après le début de l'infection.Figure 4 presents the results obtained by infecting in a comparative manner the CEM line serving as a positive control, the CEM line resistant to geneticin (CEM.gén.r.) transfected with pVV2), 2 "anti-tat" populations (AS1 and AS2) and 2 "anti-rev" populations (AS3 and AS4). The measurement of viral replication was followed by observation and counting of the number of HIV positive cells detected by indirect immunofluorescence on different days after infection: The superposition of the curves "CEM" and "CEM gen.r." shows that the presence of geneticin in the medium does not affect the infection of CEM cells by the HIV virus. It appears that the 4 "antisense" populations tested show a significant delay in the start of the infection, the eclipse period is extended by 2 days for AS1 and up to 6 days in the case of AS3. In addition, a small percentage of cells are infected for certain lines (AS2, AS3, AS4) (25 to 60%) even late after infection, reflecting the resistance to viral infection of a large number of cells within these uncloned populations. This is not the case for the AS1 line which has more than 95% of positive cells 10 days after the start of the infection.

La Figure 5 présente les résultats obtenus au cours d'une expérience du même type, mais réalisée avec un pannel plus large de populations ASX et quantifiée par la mesure des antigènes HIV-1 présents dans les surnageants à différents jours après l'infection par HIV. Seuls sont présentés les résultats obtenus au jour 24 (ceux-ci étant représentatifs des résultats obtenus aux autres jours). Afin d'éviter l'accumulation des particules virales et de fausser les mesures comparatives, les surnageants sont collectés 5 heures après le changement de milieu précédent.Figure 5 presents the results obtained during an experiment of the same type, but carried out with a larger panel of ASX populations and quantified by the measurement of the HIV-1 antigens present in the supernatants on different days after HIV infection. . Only the results obtained on day 24 are presented (these being representative of the results obtained on other days). In order to avoid the accumulation of viral particles and to distort the comparative measurements, the supernatants are collected 5 hours after the change of previous medium.

Les populations "VAI/anti-tat" correspondent aux conditions AS1, AS2, AS6, AS7 et AS8, et les populations "VAI/anti-rev" aux conditions AS3, AS4, AS9, AS1 et AS12.The populations "VAI / anti-tat" correspond to conditions AS1, AS2, AS6, AS7 and AS8, and the populations "VAI / anti-rev" correspond to conditions AS3, AS4, AS9, AS1 and AS12.

Il apparaît que la plupart des populations "antisens" présentent une diminution significative de la quantité d'antigènes HIV-1 mesurée dans les surnageants, pour 8 lignées sur 10 (AS2, AS3, AS4, AS6, AS8, AS9, AS10 et AS12), on mesure moins de 20% de production d'antigènes viraux comparativement au contrôle, 2 populations atteignent 70% du niveau contrôle (AS1 et AS7).It appears that most “antisense” populations have a significant decrease in the amount of HIV-1 antigens measured in the supernatants, for 8 out of 10 lines (AS2, AS3, AS4, AS6, AS8, AS9, AS10 and AS12) , less than 20% of viral antigen production is measured compared to control, 2 populations reach 70% of the control level (AS1 and AS7).

Les résultats obtenus pour les populations AS 1,2,3 et AS4 selon 2 techniques de mesure de la réplication virale : Immunofluorescence (Figure 4) et concentrations en antigènes (Figure 5) sont concordants. Dans les Figures 4 et 5, les populations AS1, AS2, AS3 et AS4 sont identiques.The results obtained for populations AS 1,2,3 and AS4 according to 2 techniques for measuring viral replication: Immunofluorescence (Figure 4) and concentrations of antigens (Figure 5) are consistent. In Figures 4 and 5, the populations AS1, AS2, AS3 and AS4 are identical.

Exemple 4 : Mesure du taux d'expression du VA-ARNIEXAMPLE 4 Measurement of the Expression Rate of VA-ARNI

Il est possible de caractériser l'expression des ARN antisens grâce aux techniques de Northen-blot ou bien d'hybridation en milieu liquide. Les ARN sont préparés suivant le protocole suivant : 25.106 sont rincées deux fois par du tampon salin, les cellules sont lysées à 4 ° C par choc hypotonique (Tris 10 mM ph 7,4, NaCI 10 mM, MgCl2, 3 mM) et par action de NP 40 1 % ; après centrifugation (10.000 rpm, 10 minutes), le surnageant contenant les ARN cytoplasmiques est débarrassé des protéines résiduelles par 3 extractions au phénol-chloroforme et les ARN sont concentrés à l'éthanol. 10 ug d'ARN sont analysés par Northern-blot et hybridés avec une sonde monobrin spécifique de la région 3' du gène VA. Les résultats obtenus sont présentés sur la Figure 8. Les résultats présentés ici illustrent le fait que in vivo les constructions testées (ici A5 io,"VA/anti-rev") sont exprimées et que le produit de transcription obtenu a bien la taille attendue.It is possible to characterize the expression of antisense RNAs using Northen-blot techniques or hybridization in liquid medium. The RNAs are prepared according to the following protocol: 25.10 6 are rinsed twice with saline buffer, the cells are lysed at 4 ° C by hypotonic shock (Tris 10 mM ph 7.4, NaCl 10 m M , MgCl 2 , 3 mM ) and per share of NP 40 1%; after centrifugation (10,000 rpm, 10 minutes), the supernatant containing the cytoplasmic RNA is freed from residual proteins by 3 phenol-chloroform extractions and the RNA are concentrated with ethanol. 10 μg of RNA are analyzed by Northern blot and hybridized with a single strand probe specific for the 3 ′ region of the VA gene. The results obtained are presented in FIG. 8. The results presented here illustrate the fact that in vivo the constructs tested (here A5 io , "VA / anti-rev") are expressed and that the transcription product obtained has indeed the expected size .

Exemple 5 : Utilisation simultanée de plusieurs gènes VA-chimères : "Cocktails-antisens"Example 5: Simultaneous use of several VA-chimeric genes: "Cocktails-antisense"

On a réalisé une construction génétique comportant la succession des deux gènes VA-anti rev et VA-anti tat, clonés respectivement dans les sites Cla1 et Hind III du plasmide pVV2. Des expériences de transcription acellulaires, réalisées avec cette construction, ont démontré que chacun de ces gènes s'exprimait correctement :

  • Les ARN, issus de la transcription en système acellulaire du plasmide portant les deux gènes, ont été analysés par Northern-blot et révélés soit avec une sonde spécifique de la séquence rev, soit avec une sonde spécifique de la séquence tat. Les résultats obtenus sont présentés sur la figure 9.
    • - Le protocole de transcription acellulaire est celui déjà utilisé à l'exemple 2 et pour la figure 3 (ref 21 WU et al, et 22 Weil et al)
    • - L'analyse des ARN par Northern-blot est réalisé après purification des ARN (traitement par la DNase 1 puis la protéinase K et extraction au phénol-chloroforme), séparation sur gel d'agarose en milieu dénaturant, transfert sur membrane et révélation soit avec la sonde rev (piste a) soit avec la sonde tat (piste b).
A genetic construction was carried out comprising the succession of the two genes VA-anti rev and VA-anti tat, cloned respectively in the Cla1 and Hind III sites of the plasmid pVV2. Acellular transcription experiments, carried out with this construction, demonstrated that each of these genes expressed itself correctly:
  • The RNAs, derived from the transcription in the acellular system of the plasmid carrying the two genes, were analyzed by Northern blot and revealed either with a probe specific for the rev sequence, or with a probe specific for the tat sequence. The results obtained are presented in FIG. 9.
    • - The acellular transcription protocol is that already used in Example 2 and for Figure 3 (ref 21 WU et al, and 22 Weil et al)
    • - Analysis of the RNA by Northern blot is carried out after purification of the RNA (treatment with DNase 1 then proteinase K and extraction with phenol-chloroform), separation on agarose gel in denaturing medium, transfer to membrane and revelation either with the rev probe (track a) or with the tat probe (track b).

Exemple 6 : Vectorisation des gènes VA-antisens par des rétrovirus murins modifiés - Transfert aux progéniteurs des cellules hématopoïétiques.Example 6: Vectorization of VA-antisense genes by modified murine retroviruses - Transfer to the progenitors of hematopoietic cells. 1) Vecteur rétroviral de type I :1) Type I retroviral vector:

Le vecteur qui est utilisé est le plasmide pMV7 (P.T. Kirschmeier, GM. Housey, M.D. Jonhson, A.S. Perkins and I.B. Weinstein, 1988, DNA, Vol. 7, 3, 219-225). Il est composé d'une part des séquences nécessaires à la maintenance plasmidique et d'autre art des deux LTR du virus Moloney encadrant le gène de résistance à la néomycine (sous la dépendance du proimoteur TK) . Les sites de clonage Hind III, Clal et EcoRI situés entre le LTR 5' et le gène néomycine permettent l'insertion de séquences exogènes. La cellule d'encapsidation est la cellule DAMP (R. Mann, R.C. Mulligan and D. Baltimore, 1983, Cell, 33, 143-159). On a cloné les constructions génétiques au site Hind III du pMV7 et transfecté les plasmides recombinants obtenus dans la cellule DAMP. Les cellules DAMP devenues résistantes à la néomycine ont été sous-clonées. Les clones présentant un fort pouvoir infectieux, détecté dans les surnageants de culture, ont été sélectionés. Ces clones ont permis d'infecter des lymphocytes de la lignée CEM (lymphocytes T4 auxilliaires). L'infection est réalisée grâce à une co-culture d'une nuit, entre les DAMP et les lymphocytes. Les lymphocytes ayant été infectés sont devenus, à leur tour, résistants à la néomycine et peuvent être ainsi sélectionnés. Les ARN provenant de ces lymphocytes ont été analysés et l'expression du gène VA-anti rev (porté par la séquence provirale intégrée) détectée.The vector which is used is the plasmid pMV7 (P.T. Kirschmeier, GM. Housey, M.D. Jonhson, A.S. Perkins and I.B. Weinstein, 1988, DNA, Vol. 7, 3, 219-225). It is composed on the one hand of the sequences necessary for plasmid maintenance and on the other art of the two LTRs of the Moloney virus flanking the gene for resistance to neomycin (under the dependence of the TK proimotor). The Hind III, Clal and EcoRI cloning sites located between the 5 'LTR and the neomycin gene allow the insertion of exogenous sequences. The packaging cell is the DAMP cell (R. Mann, R.C. Mulligan and D. Baltimore, 1983, Cell, 33, 143-159). The genetic constructs were cloned at the Hind III site of pMV7 and transfected the recombinant plasmids obtained in the DAMP cell. DAMP cells that have become resistant to neomycin have been subcloned. The clones exhibiting a high infectious power, detected in the culture supernatants, were selected. These clones made it possible to infect lymphocytes of the CEM line (T4 auxiliary lymphocytes). The infection is carried out thanks to an overnight co-culture, between the DAMPs and the lymphocytes. Lymphocytes that have been infected have in turn become resistant to neomycin and can thus be selected. The RNAs from these lymphocytes were analyzed and the expression of the VA-anti rev gene (carried by the integrated proviral sequence) detected.

Cependant, l'interférence possible entre l'activité de l'ARN Polymérase Il qui transcrit la totalité du génome viral à partir du LTR 5' et l'activité de l'ARN Polymérase III pourrait, dans certains cas, se révéler être un élément défavorable pour l'efficacité d'un tel système.However, the possible interference between the activity of RNA Polymerase II which transcribes the entire viral genome from the 5 'LTR and the activity of RNA Polymerase III could, in certain cases, prove to be an element. unfavorable for the effectiveness of such a system.

2) Vecteurs rétroviraux de type II :2) Type II retroviral vectors:

On a déleté les signaux enhancers présents dans la région U3 du LTR 3' du virus Moloney cloné dans le pMV7 et on a remplacé ces signaux par des sites de clonage unique sur ce plasmide (ces modifications étant réalisées grâce à la technologie PCR). Les constructions antisens sont insérées à ces sites. Cette modification présente deux avantages : elle permet d'une part de dupliquer le gène cloné grâce au jeu de la reverse transcription (la région U3 présente sur chacun des deux LTR provient de la région U3 située sur le LTR en 3' du provirus précédent) mais surtout, cela ne permet plus à l'ARN Polymérase Il de transcrire le provirus intégré dans la cellule récipiente. Cela évite l'interférence avec l'ARN Polymérase III et assure une sécurité de fonctionnement vis à vis de l'activation toujours possible de gènes adjacents.The enhancer signals present in the U3 region of the 3 ′ LTR of the Moloney virus cloned in pMV7 were deleted and these signals were replaced by single cloning sites on this plasmid (these modifications being carried out using PCR technology). Antisense constructions are inserted at these sites. This modification has two advantages: it allows on the one hand to duplicate the cloned gene thanks to the game of reverse transcription (the U3 region present on each of the two LTRs comes from the U3 region located on the LTR in 3 ′ of the previous provirus) but above all, this no longer allows the RNA Polymerase II to transcribe the provirus integrated into the recipient cell. This avoids interference with RNA Polymerase III and ensures operational safety with regard to the always possible activation of adjacent genes.

Plus précisément, le vecteur Il a été obtenu comme illustré figure 10:

  • 1) le site unique Hind III a été délété (coupure, remplissage avec la DNA polymérase, religature).
  • 2) la digestion complète du pMV7 par Cla I libère le gène de sélection (néomycine), la pârtie plasmidique résultante est ensuite traitée par l'enzyme Xho 1 de manière partielle. Seul le fragment contenant le LTR 5' est purifié sur gel d'agarose (5064 pb). De ce fait, le LTR 3' est perdu.
  • 3) le LTR 3' est ensuite remplacé par un LTR 3' modifié pour lequel les régions enhancers situées dans la région U3 ont été supprimées et remplacées par un site Hind III (ceci est réalisé grâce à la technologie P.C.R.).
  • 4) le gène antisens a été cloné dans le site Hind III nouvellement créé.
  • 5) cette nouvelle construction rétrovirale peut être utilisée de manière habituelle :
    • - transfection dans des cellules d'encapsidation (cellules CRIP ref Danos and R.C. Mulligan, Proc. Natl. Acad. Sci., 1988, vol. 85, 6460-6446).
    • - récupération des surnageants avec estimation du titre infectieux.
    • - ces particules rétrovirales recombinantes seront utilisées pour transduire les cellules cibles.
More precisely, the vector Il was obtained as illustrated in FIG. 10:
  • 1) the unique Hind III site has been deleted (cleavage, filling with DNA polymerase, religation).
  • 2) the complete digestion of pMV7 by Cla I releases the selection gene (neomycin), the resulting plasmid tarnish is then partially treated with the enzyme Xho 1. Only the fragment containing the 5 'LTR is purified on agarose gel (5064 bp). As a result, the 3 'LTR is lost.
  • 3) the 3 ′ LTR is then replaced by a modified 3 ′ LTR for which the enhancer regions located in the U3 region have been deleted and replaced by a Hind III site (this is achieved using PCR technology).
  • 4) the antisense gene has been cloned into the newly created Hind III site.
  • 5) this new retroviral construction can be used in the usual way:
    • - transfection into packaging cells (CRIP cells ref Danos and RC Mulligan, Proc. Natl. Acad. Sci., 1988, vol. 85, 6460-6446).
    • - recovery of supernatants with estimation of the infectious titer.
    • - these recombinant retroviral particles will be used to transduce the target cells.

Dans le but d'éviter l'obtention de particules recombinantes sauvages du virus Moloney, la cellule d'encapsidation DAMP est changée au profit de la cellule CRIP (O. Danos and R.C. Mulligan, Proc. Natl. Acad. Sci., 1988, 85, 6460-6446). La cellule CRIP contient deux génomes rétroviraux auxiliaires délétés de l'extrémité LTR 3', du signal d'encapsidation et mutés l'un dans la région Gag, l'autre dans la région env.In order to avoid obtaining wild recombinant particles of the Moloney virus, the DAMP packaging cell is changed in favor of the CRIP cell (O. Danos and RC Mulligan, Proc. Natl. Acad. Sci., 1988, 85, 6460-6446). The CRIP cell contains two helper retroviral genomes deleted from the 3 ′ LTR end of the packaging signal and mutated one in the Gag region and the other in the env region.

Par complémentation la production des protéines Gag, Pol et Env est assurée mais la probabilité d'obtention de génomes sauvages obtenus par recombinaison est réduite à zéro. L'ensemble des améliorations proposées et décrites ici permet d'assurer la production de particules rétrovirales recombinantes portant un ou plusieurs gènes VA/antisens (pMV/AS) correctement transcrits par la Polymérase III. Ce vecteur offre également une sécurité optimale de fonctionnement en vue des applications thérapeutiques envisagées.By complementation, the production of the proteins Gag, Pol and Env is ensured, but the probability of obtaining wild genomes obtained by recombination is reduced to zero. The set of improvements proposed and described here makes it possible to ensure the production of recombinant retroviral particles carrying one or more VA / antisense genes (pMV / AS) correctly transcribed by Polymerase III. This vector also offers optimum operational safety for the intended therapeutic applications.

EXEMPLE 7 : Expression transitoire des gènes VA-antisensEXAMPLE 7 Transient expression of VA-antisense genes

Dans la perspective d'une thérapeutique localisée à court terme, on a vérifié, en système cellulaire, l'expression transitoire des gènes VA-antisens. En expression transitoire, le gène VA-antisens n'est pas intégré dans le génome de la cellule hôte et s'accumule de façon importante dans le noyau où il est transcrit.With a view to localized therapy in the short term, the transient expression of the VA-antisense genes has been verified in the cellular system. In transient expression, the VA-antisense gene is not integrated into the genome of the host cell and accumulates significantly in the nucleus where it is transcribed.

Des cellules adhérentes (lignée 293 : cellules embryonnaires de rein, humaines) ont été transfectées par 20 g du plasmide pVA anti rev. La technique utilisée est la transfection au phosphate de calcium. Cette technique consiste à mettre en contact pendant 18 heures, l'ADN plasmidique précipité par le phosphate de calcium et les cellules en augmantant l'absorption de l'ADN surt les membranes cellulaires et en limitant l'action des DNases cellulaires sur l'ADN entrant. Les ARN sont préparés 48 heures après la transfection, comme décrit précédemment, et analysés par Northern-blot avec une sonde spécifique des VA ARN anti rev. La figure 11 montre une expression transitoire des ARN (piste 293) plus forte en comparaison avec les ARN produits dans les cellules qui expriment de manière stable l'ARN VA intégré (piste CEM).Adherent cells (line 293: kidney embryonic cells, human) were transfected with 20 g of the plasmid pVA anti rev. The technique used is transfection with calcium phosphate. This technique consists in putting in contact for 18 hours, the plasmid DNA precipitated by calcium phosphate and the cells by increasing the absorption of DNA on cell membranes and by limiting the action of cellular DNases on DNA. entering. The RNAs are prepared 48 hours after transfection, as described above, and analyzed by Northern blot with a probe specific for anti rev VA RNA. FIG. 11 shows a stronger transient expression of RNA (lane 293) in comparison with the RNA produced in cells which stably express the integrated VA RNA (lane CEM).

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Claims (24)

1. Vecteur d'ADN recombinant comportant une cassette de transcription par l'ARN polymérase III, constituée par un gène viral transcrit par l'ARN polymérase III dans lequel on a inséré un oligonucléotide, fragment d'ADN, entre ou à l'extérieur des boites A et B constituant le promoteur dudit gène viral.1. Recombinant DNA vector comprising an RNA polymerase III transcription cassette, consisting of a viral gene transcribed by RNA polymerase III into which an oligonucleotide, DNA fragment, has been inserted between or outside boxes A and B constituting the promoter of said viral gene. 2. Vecteur selon la revendication 1, caractérisé en ce que le gène viral est un gène VA d'un adénovirus, un gène EBER d'un virus Epstein Barr ou un gène viral transcrit par l'ADN polymérase III d'un virus Herpès.2. Vector according to claim 1, characterized in that the viral gene is a VA gene of an adenovirus, an EBER gene of an Epstein Barr virus or a viral gene transcribed by DNA polymerase III of a Herpes virus. 3. Vecteur selon la revendication 1 ou 2, caractérisé en ce que le gène est le gène VA 1 ou VA Il de l'Adénovirus.3. Vector according to claim 1 or 2, characterized in that the gene is the gene VA 1 or VA II of the Adenovirus. 4. Vecteur selon l'une des revendications précédentes, caractérise en ce que le vecteur est un vecteur réplicatif plasmidique, épisomique ou un vecteur viral.4. Vector according to one of the preceding claims, characterized in that the vector is a plasmid, episomal replicative vector or a viral vector. 5. Vecteur selon l'une des revendications précédentes, caractérisé en ce que le vecteur est un vecteur épisomique portant l'origine de réplication du virus Epstein Barr (oriP), ainsi que les séquences codantes pour la protéine EBNA 1.5. Vector according to one of the preceding claims, characterized in that the vector is an episomal vector carrying the origin of replication of the Epstein Barr virus (oriP), as well as the coding sequences for the protein EBNA 1. 6. Vecteur selon l'une des revendications précédentes caractérise en ce qu'il comporte plusieurs gènes viraux identiques ou différents transcrits par l'ARN polymèrase III dans lesquels on a inséré un oligonucléotide identique ou différent en dehors des boites A et B dans chacun desdits gènes viraux.6. Vector according to one of the preceding claims, characterized in that it comprises several identical or different viral genes transcribed by RNA polymerase III into which an identical or different oligonucleotide has been inserted outside of boxes A and B in each of said said viral genes. 7. Vecteur selon l'une des revendications précédentes, caractérisé en ce que l'oligonucléotide est inséré dans la région intermédiaire située entre les boites A et B.7. Vector according to one of the preceding claims, characterized in that the oligonucleotide is inserted in the intermediate region located between the boxes A and B. 8. Vecteur selon l'une des revendications précédentes, caractérisé en ce que l'oligonucléotide comporte de 15 à 40 nucléotides, de préférence 15 à 25.8. Vector according to one of the preceding claims, characterized in that the oligonucleotide comprises from 15 to 40 nucleotides, preferably 15 to 25. 9. Vecteur selon l'une des revendications précédentes, caractérisé en ce que le gène viral est un gène d'Adénovirus inactivé, par délétion ou mutation, en ce qui concerne l'inhibition de l'action de l'interféron.9. Vector according to one of the preceding claims, characterized in that the viral gene is an inactivated Adenovirus gene, by deletion or mutation, as regards the inhibition of the action of interferon. 10. Vecteur selon l'une des revendications précédentes, caractérisé en ce que l'oligonucléotide est inséré à l'intérieur de la région responsable de l'activité d'inhibition de l'action de l'interféron.10. Vector according to one of the preceding claims, characterized in that the oligonucleotide is inserted inside the region responsible for the activity of inhibiting the action of interferon. 11. Vecteur selon l'une des revendications 1 à 9 caractérisé en ce qu'un oligonucléotide est inséré dans la région allant du nucléotide 10694 à 10730, plus particulièrement 10702 à 10728 ou à la place de cette région du gène VA-1 de l'Adénovirus 2.11. Vector according to one of claims 1 to 9 characterized in that an oligonucleotide is inserted in the region ranging from nucleotide 10694 to 10730, more particularly 10702 to 10728 or in place of this region of the VA-1 gene of l 'Adenovirus 2. 12. Vecteur selon l'une des revendications précédentes, caractérisé en ce que l'oligonucléotide est inséré au nucléotide 10711 du gène VA 1 de l'Adénovirus 2 représenté Figure 1.12. Vector according to one of the preceding claims, characterized in that the oligonucleotide is inserted into nucleotide 10711 of the VA 1 gene of the Adenovirus 2 represented in FIG. 1. 13. Vecteur selon l'une des revendications 1 à 9 caractérisé en ce qu'un oligonucléotide est inséré dans le gène VA-1 de l'Adénovirus 2 à l'intérieur de l'une des régions suivantes : a) nucléotides 10635 à 10639 ; b) nucléotides 10682 à 10688 ; c) nucléotides 10733 à 10736 ;
ou à la place de l'une de ces régions, celle-ci étant délétée..
13. Vector according to one of claims 1 to 9 characterized in that an oligonucleotide is inserted into the VA-1 gene of Adenovirus 2 inside one of the following regions: a) nucleotides 10635 to 10639; b) nucleotides 10682 to 10688; c) nucleotides 10733 to 10736;
or in place of one of these regions, the latter being deleted.
14. Vecteur selon la revendication 13 caractérisé en ce que l'oligonucléotide est inséré dans le gène VA delta IV.14. Vector according to claim 13 characterized in that the oligonucleotide is inserted into the VA delta IV gene. 15. Vecteur selon l'une des revendications précédentes caractérisé en ce qu'il s'agit d'un Adénovirus recombinant défectif.15. Vector according to one of the preceding claims, characterized in that it is a defective recombinant adenovirus. 16. Vecteur rétroviral à ARN, caractérisé en ce qu'il comporte le transcrit d'ARN de la cassette de transcription selon l'une des revendications 1 à 13.16. RNA retroviral vector, characterized in that it comprises the RNA transcript of the transcription cassette according to one of claims 1 to 13. 17. Cellules infectées ou transfectées par un vecteur, selon l'une des revendications 1 à 16.17. Cells infected or transfected with a vector, according to one of claims 1 to 16. 18. Procédé de production intracellulaire d'un fragment d'ARN in vitro ou in vivo dans lequel on transfecte ou infecte des cellules eucaryotes comportant de l'ARN polymérase III avec un vecteur selon l'une des revendications 1 à 16, comportant comme oligonucléotides un fragment d'ADN correspondant au transcrit inverse dudit ARN et en ce que l'on cultive dans un milieu de culture approprié les cellules eucaryotes ainsi transfectées ou infectées.18. A method of intracellular production of an RNA fragment in vitro or in vivo in which eukaryotic cells comprising RNA polymerase III are transfected or infected with a vector according to one of claims 1 to 16, comprising as oligonucleotides a DNA fragment corresponding to the reverse transcript of said RNA and in that the eukaryotic cells thus transfected or infected are cultured in an appropriate culture medium. 19. Procédé de blocage de l'expression d'un gène in vivo à l'aide d'un vecteur, selon l'une des revendications 1 à 16, dont ledit oligonucléotide est transcrit en une molécule ARN antisens ou ribozymique qui s'hybride et/ou coupe l'ARN messager dudit gène.19. Method for blocking the expression of a gene in vivo using a vector, according to one of claims 1 to 16, in which said oligonucleotide is transcribed into an antisense or ribozymic RNA molecule which hybridizes and / or cuts the messenger RNA of said gene. 20. Procédé de traitement de cellules ex vivo à l'aide d'un vecteur selon l'une des revendications là 16.20. A method of treating cells ex vivo using a vector according to one of claims 1 to 16. 21. A titre de médicament, un vecteur selon l'une des revendications 1 à 16 utilisable notamment comme agent antiviral, antitumoral, antibiotique ou antiparasitaire, ou dans toute pathologie où un gène est anormalement exprimé soit par mutation, soit par dérégulation.21. As a medicament, a vector according to one of claims 1 to 16 which can be used in particular as an antiviral, antitumor, antibiotic or antiparasitic agent, or in any pathology where a gene is abnormally expressed either by mutation or by deregulation. 22. A titre de médicament, selon la revendication 20, un vecteur selon l'une des revendications 1 à 16, dans lequel l'oligonucléotide est transcrit en une molécule ARN "antisens" ou une molécule d'ARN ribozymique bloquant l'expression d'un gène impliqué dans une pathologie en s'hybridant et, le cas échéant, en coupant son ARN messager d'origine cellulaire virale, bactérienne ou parasitaire.22. As a medicament, according to claim 20, a vector according to one of claims 1 to 16, in which the oligonucleotide is transcribed into an "antisense" RNA molecule or a ribozymic RNA molecule blocking expression d '' a gene involved in a pathology by hybridizing and, if necessary, by cutting its messenger RNA of viral, bacterial or parasitic cell origin. 23. A titre de médicament selon la revendication 20 ou 21, un vecteur constitué par un vecteur viral défectif tel qu'un Adénovirus ou un vecteur rétroviral défectif tel qu'un rétrovirus murin.23. As a medicament according to claim 20 or 21, a vector constituted by a defective viral vector such as an Adenovirus or a defective retroviral vector such as a murine retrovirus. 24. A titre de médicament pour le traitement du SIDA, selon l'une des revendictions 20 à 22, un vecteur selon l'une des revendications 1 à !6, comportant à titre d'oligonucléotides des séquences antisens notamment anti-rev ou anti-tat.24. As a medicament for the treatment of AIDS, according to one of claims 20 to 22, a vector according to one of claims 1 to 6, comprising as oligonucleotides antisense sequences in particular anti-rev or anti -state.
EP93401745A 1993-07-06 1993-07-06 Vector comprising viral gene transcribed by ARN polymerase III Expired - Lifetime EP0647716B1 (en)

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FR2743818A1 (en) * 1996-01-23 1997-07-25 Agronomique Inst Nat Rech DNA CONSTRUCTS AND EXPRESSION VECTORS DERIVED FROM ADENOVIRUS VA I RNA GENE
WO1997027309A1 (en) * 1996-01-23 1997-07-31 Institut National De La Recherche Agronomique - I.N.R.A. Dna constructs and expression vectors derived from the adenovirus va rna i gene
US6291164B1 (en) 1996-11-22 2001-09-18 Invitrogen Corporation Methods for preventing inhibition of nucleic acid synthesis by pyrophosphate
US6764839B2 (en) 1996-11-22 2004-07-20 Invitrogen Corporation Methods for preventing inhibition of nucleic acid synthesis by pyrophosphate
US7344835B2 (en) 1996-11-22 2008-03-18 Invitrogen Corporation Methods for preventing inhibition of nucleic acid synthesis by pyrophosphate
US6767699B2 (en) 2000-05-31 2004-07-27 Chiron Corporation Method for the quantitation of alphavirus replicon particles
WO2002024931A1 (en) * 2000-09-21 2002-03-28 Nascacell Gmbh Expression system for functional nucleic acids

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