EP2179041A4 - Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis - Google Patents

Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis

Info

Publication number
EP2179041A4
EP2179041A4 EP08826817A EP08826817A EP2179041A4 EP 2179041 A4 EP2179041 A4 EP 2179041A4 EP 08826817 A EP08826817 A EP 08826817A EP 08826817 A EP08826817 A EP 08826817A EP 2179041 A4 EP2179041 A4 EP 2179041A4
Authority
EP
European Patent Office
Prior art keywords
compositions
identification
methods
mycobacterium tuberculosis
subspecies
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Withdrawn
Application number
EP08826817A
Other languages
German (de)
French (fr)
Other versions
EP2179041A2 (en
Inventor
Christian Massire
Rangarajan Sampath
Lawrence B Blyn
David J Ecker
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ibis Biosciences Inc
Original Assignee
Ibis Biosciences Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Ibis Biosciences Inc filed Critical Ibis Biosciences Inc
Publication of EP2179041A2 publication Critical patent/EP2179041A2/en
Publication of EP2179041A4 publication Critical patent/EP2179041A4/en
Withdrawn legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/686—Polymerase chain reaction [PCR]
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
    • C12Q2565/60—Detection means characterised by use of a special device
    • C12Q2565/627—Detection means characterised by use of a special device being a mass spectrometer
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/16—Primer sets for multiplex assays
EP08826817A 2007-06-22 2008-06-23 Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis Withdrawn EP2179041A4 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US94585007P 2007-06-22 2007-06-22
US3788408P 2008-03-19 2008-03-19
PCT/US2008/067911 WO2009017902A2 (en) 2007-06-22 2008-06-23 Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis

Publications (2)

Publication Number Publication Date
EP2179041A2 EP2179041A2 (en) 2010-04-28
EP2179041A4 true EP2179041A4 (en) 2010-12-22

Family

ID=40305160

Family Applications (1)

Application Number Title Priority Date Filing Date
EP08826817A Withdrawn EP2179041A4 (en) 2007-06-22 2008-06-23 Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis

Country Status (3)

Country Link
EP (1) EP2179041A4 (en)
WO (1) WO2009017902A2 (en)
ZA (1) ZA201000218B (en)

Families Citing this family (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2008151023A2 (en) 2007-06-01 2008-12-11 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
US9890408B2 (en) 2009-10-15 2018-02-13 Ibis Biosciences, Inc. Multiple displacement amplification
US20130095489A1 (en) * 2010-05-04 2013-04-18 Centers For Disease Control And Prevention Process for detection of multidrug resistant tuberculosis using real-time pcr and high resolution melt analysis
GB201203903D0 (en) * 2012-03-06 2012-04-18 Vela Operations Pte Ltd Real-time PCR detection of mycobacterium tuberculosis complex
EP3572509B1 (en) * 2017-01-19 2023-09-20 Kaneka Corporation Primer set, probe, kit, and method for detecting mycobacterium kansasii
CN108165560B (en) * 2017-12-01 2021-06-08 北京蛋白质组研究中心 Mycobacterium tuberculosis H37Rv encoding gene and application thereof
CN108165562B (en) * 2017-12-01 2021-06-08 北京蛋白质组研究中心 Mycobacterium tuberculosis H37Rv encoding gene and application thereof
CN108165561B (en) * 2017-12-01 2021-06-18 北京蛋白质组研究中心 Mycobacterium tuberculosis H37Rv encoding gene and application thereof
KR20210124360A (en) * 2019-03-04 2021-10-14 미쓰이 가가쿠 가부시키가이샤 A method for determining the existence state of an organism having a cell wall, and a method for identifying an organism having a cell wall
CN112481399B (en) * 2020-12-21 2022-08-30 上海国际旅行卫生保健中心(上海海关口岸门诊部) Primer group for mycobacterium tuberculosis MLST typing based on second-generation sequencing technology and library construction method
CN115029453B (en) * 2021-11-16 2023-06-16 江汉大学 MNP (MNP) marking site of streptococcus pyogenes, primer composition, kit and application of MNP marking site

Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5658733A (en) * 1994-04-18 1997-08-19 Mayo Foundation For Medical Education And Research Detection of isoniazid resistant strains of M. tuberculosis
US5851763A (en) * 1992-09-17 1998-12-22 Institut Pasteur Rapid detection of antibiotic resistance in mycobacterium tuberculosis
WO2000036142A1 (en) * 1998-12-11 2000-06-22 Visible Genetics Inc. METHOD AND KIT FOR THE CHARACTERIZATION OF ANTIBIOTIC-RESISTANCE MUTATIONS IN $i(MYCOBACTERIUM TUBERCULOSIS)
WO2003031654A1 (en) * 2001-10-09 2003-04-17 Sj Hightech Co.,Ltd. Microarray comprising probes for mycobacteria species genotyping, m. tuberculosis strain differenciation, and antibiotic-resistant strain detection
US20040110169A1 (en) * 2001-03-02 2004-06-10 Ecker David J. Method for rapid detection and identification of bioagents
WO2004061134A1 (en) * 2002-12-27 2004-07-22 University Of Medicine And Dentistry Of New Jersey Method for single nucleotide polymorphism detection
WO2006067454A1 (en) * 2004-12-23 2006-06-29 Health Protection Agency Detection of nucleic acid mutations

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6892139B2 (en) * 1999-01-29 2005-05-10 The Regents Of The University Of California Determining the functions and interactions of proteins by comparative analysis
JP3565752B2 (en) * 1999-11-02 2004-09-15 株式会社海洋バイオテクノロジー研究所 Identification and specific detection of slow-growing mycobacteria using characteristic nucleotide sequences present in DNA gyrase gene

Patent Citations (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5851763A (en) * 1992-09-17 1998-12-22 Institut Pasteur Rapid detection of antibiotic resistance in mycobacterium tuberculosis
US5658733A (en) * 1994-04-18 1997-08-19 Mayo Foundation For Medical Education And Research Detection of isoniazid resistant strains of M. tuberculosis
WO2000036142A1 (en) * 1998-12-11 2000-06-22 Visible Genetics Inc. METHOD AND KIT FOR THE CHARACTERIZATION OF ANTIBIOTIC-RESISTANCE MUTATIONS IN $i(MYCOBACTERIUM TUBERCULOSIS)
US20040110169A1 (en) * 2001-03-02 2004-06-10 Ecker David J. Method for rapid detection and identification of bioagents
WO2003031654A1 (en) * 2001-10-09 2003-04-17 Sj Hightech Co.,Ltd. Microarray comprising probes for mycobacteria species genotyping, m. tuberculosis strain differenciation, and antibiotic-resistant strain detection
WO2004061134A1 (en) * 2002-12-27 2004-07-22 University Of Medicine And Dentistry Of New Jersey Method for single nucleotide polymorphism detection
WO2006067454A1 (en) * 2004-12-23 2006-06-29 Health Protection Agency Detection of nucleic acid mutations

Also Published As

Publication number Publication date
EP2179041A2 (en) 2010-04-28
WO2009017902A2 (en) 2009-02-05
WO2009017902A3 (en) 2009-10-15
ZA201000218B (en) 2012-04-25

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Legal Events

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PUAI Public reference made under article 153(3) epc to a published international application that has entered the european phase

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Effective date: 20100122

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Designated state(s): AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MT NL NO PL PT RO SE SI SK TR

RAP1 Party data changed (applicant data changed or rights of an application transferred)

Owner name: IBIS BIOSCIENCES, INC.

DAX Request for extension of the european patent (deleted)
A4 Supplementary search report drawn up and despatched

Effective date: 20101124

RIC1 Information provided on ipc code assigned before grant

Ipc: C12N 15/31 20060101ALI20101118BHEP

Ipc: C12Q 1/68 20060101AFI20101118BHEP

STAA Information on the status of an ep patent application or granted ep patent

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Effective date: 20110224