WO1996008508A1 - A new human peptide antibiotic (fall-39) and its use - Google Patents

A new human peptide antibiotic (fall-39) and its use Download PDF

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Publication number
WO1996008508A1
WO1996008508A1 PCT/SE1995/001030 SE9501030W WO9608508A1 WO 1996008508 A1 WO1996008508 A1 WO 1996008508A1 SE 9501030 W SE9501030 W SE 9501030W WO 9608508 A1 WO9608508 A1 WO 9608508A1
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Prior art keywords
fall
polypeptide
pharmaceutical composition
peptide
pharmaceutically acceptable
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PCT/SE1995/001030
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French (fr)
Inventor
Hans G. Boman
Birgitta Agerberth
Gudmundur H. Gudmundsson
Hans Gunne
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Boman Hans G
Birgitta Agerberth
Gudmundsson Gudmundur H
Hans Gunne
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Application filed by Boman Hans G, Birgitta Agerberth, Gudmundsson Gudmundur H, Hans Gunne filed Critical Boman Hans G
Priority to AU35368/95A priority Critical patent/AU3536895A/en
Publication of WO1996008508A1 publication Critical patent/WO1996008508A1/en

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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Definitions

  • the present invention relates to a new human polypeptide (FALL-39), its therapeutic use, pharmaceutical compositions containing same as an active ingredient, a cDNA sequence, and a method for inhibiting microbial growth.
  • the peptides most studied are the cecropins and the magainins in the first group and the defensin family in the fourth group.
  • the animal peptide antibiotics can be divided into two groups: Those which like the defensins accumulate in the granule of phagocytes and those which are delivered into body fluids or epithelial layers. Peptides which have evolved to kill engulfed microbes inside phagocytic vac ⁇ oles can in released form be cytotoxic to the host and this is the case for the defensins
  • Animal peptide antiobiotics differ from the "classical" antibiotics in several respects (Boman, H.G. (1995) Annu. Rev. Immunol . 13 , in press; Boman, H.G. (1994) in Antimicrobial Peptides . Ciba Symposium No. 186 , pp 1-4, ed. Goode, J. (John Wiley & Sons Ltd. Chichester, P019 1UD, UK)).
  • the animal peptides are all gene encoded and they are made as preproproteins which are processed to the mature peptide by defined pathways. The actual processing steps have been studied for cecropins (Boman, H.G., Boman, I.A., Andreu, D., Li, Z.-q., Merrifield, R.B.,
  • the present invention has for its main object to provide new polypeptides of biological activity but different from classical antibiotics, such as penicillins and tetracyclins.
  • Another object of the invention is to provide new human polypeptides having antimicrobial activity against bacteria without being cytotoxic.
  • Yet another object of the invention is to provide pharmaceutical compositions containig such polypeptides as active ingredients.
  • Still another object of the invention is to provide a method for inhibiting microbial growth in animals including man.
  • a further object of the invention is to provide the clone enabling expression of a precursor protein for the new polypeptides.
  • polypeptide comprising the following amino acid sequence:
  • polypeptide comprising the following amino sequence:
  • the new polypeptides according to the invention find therapeutic applications, such as used as antimicrobial agents, such as antibacterial agents.
  • the invention also includes pharmaceutical compositions containing as active ingredients one or more of the polypeptides according to the invention in an effective amount together with a pharmaceuticallly acceptable carrier or diluent.
  • Said amount is suitably antimicrobially active, such as antibacterially active.
  • the carrier or diluent is preferably adapted for oral, intravenuous, intramuscular or subcutaneous administration.
  • the invention includes a method for inhibiting microbial growth in animals, such as mammals including man, said method comprising the step of administering to an animal subject to a disorder caused by microbial attack a polypeptide as defined above, a functional derivative or a pharmaceutically acceptable salt thereof, or a composition as defined above in an inhibitory amount.
  • Such method can be directed to intestinal use constituted by oral administration of a composition as defined above in a slow release form.
  • the method can also be directed to administration by injection of such a composition in an injectable dose form.
  • compositions of this invention are pharmaceutically acceptable salts of the polypeptides of this invention.
  • Such salts are formed by methods well known to skilled artisans.
  • base salts of the polypeptides can be prepared according to conventional methods.
  • polypeptide is used said term is intended to include both functional derivatives and pharmaceutically acceptable salts of the polypeptides.
  • the active polypeptide according to the present invention can be formulated for use in human or veterinary medicine for therapeutic or prophylactic use.
  • the active preparations are normally administered orally, rectally or parenterally, such as by injection in the form of a pharmaceutical preparation or composition comprising the active constituents in combination with a pharmaceutically acceptable carrier which may be solid, semi-solid or liquid, or contained in a capsule, such as when orally admi bred.
  • a pharmaceutically acceptable carrier which may be solid, semi-solid or liquid, or contained in a capsule, such as when orally admi bred.
  • the administration may also take the form of to pical application.
  • examples of pharmaceutical preparations there may be mentioned tablets, drops, solutions and suppositories.
  • the active constituent constitutes the minor part of the preparation, such as from about 0.1 to about 50% thereof based on weight.
  • the polypeptide of the invention can be mixed with a solid, pulverulent or other carrier, for example lactose, saccharose, sorbitol, mannitol, starch, such as potatoe starch, corn starch, millopectine, cellulose derivative or gelatine, and may also include lubricants, such as magnesium or calcium stearate, or polyethylene glycol waxes compressed to the formation of tablets or bodies for dragees.
  • a solid, pulverulent or other carrier for example lactose, saccharose, sorbitol, mannitol, starch, such as potatoe starch, corn starch, millopectine, cellulose derivative or gelatine
  • lubricants such as magnesium or calcium stearate, or polyethylene glycol waxes compressed to the formation of tablets or bodies for dragees.
  • the dose units may also be presented in a coated form of enteric type.
  • Liquid preparations for oral application or for injection can be made in the form of elexirs, syrups or suspensions, for example solutions containing from 0.1 to 20% by weight of active substance, sugar and a mixture of ethanol, water, glycerol, propyleneglycol and possibly other additives of a conventional nature.
  • An important aspect of the present invention is the use of the polypeptides of the invention in products for the treatment of urinary tract infections and sexually transmitted diseases, such as disorders created by clamydia, gonococchi and HIV virus.
  • Such treatment can be performed by using a solution of the antimicrobially active polypeptide in lavage of invaded organs, cavities or tubes, such as the urinary tract, the bladder, urethral organs and passages, renal organs and associated passages, male genital organs and associated passages, etc.
  • the dose by which the active constituent is administered may vary within wide limits and is dependent on different factors, such as the seriousness of the disorder, the age and the weight of the patient and can be adjusted individually.
  • Figure 1 shows the cDNA sequence for prepro-FALL-39 with translation of the open reading frame
  • Figure 2 illustrates two Northern blot analyses with RNA from a leucemic child, a healthy child and a child with leucemia in remission in comparison with mRNA from human bone marrow;
  • Figure 3 shows an Edmundson wheel plot for residues E13-V34 in the sequence of FALL-39;
  • Figure 4 shows CD spectra of a water solution of synthetic FALL-39 before and after adding of medium E; and Figure 5 shows an inhibition zone assay for FALL-39 on E.coli.
  • a liquid lysate of a human bone marrow ⁇ gtll cDNA library (Clontech) was used to isolate template DNA by
  • RNA was isolated by an RNA separator kit
  • the completed 39-residue peptide was cleaved from the resin with liquid hydrogen fluoride:anisole:methyl sulfide (10:1:1) for 60 min at 0°C.
  • the cleavage product was washed with ether in order to remove the scavengers and then extracted into 30% acetic acid and lyophilized.
  • the peptide was purified by HPLC on a Vydac C18 column, utilizing a linear gradient of 80% acetonitrile (20-75% for 30 min) in 0.1% trifluoroacetic acid.
  • the molecular mass was analysed by a time-of-flight mass spectrometer (Biolon 20).
  • the CD spectra were recorded with a J-710 spectropolarimeter (JASCO, Japan) at the BioScience Center of Pharmacia.
  • FALL-39 is indicated by a dashed underlining. The regions towards which the three successive primers were directed are indicated as a full line for the corresponding sequence and dotted lines for the two complementary sequences.
  • the cathelin sequence starts with bases 101-115 , translated to QVLSY . * is a stop signal.
  • a comparison with the genomic DNA sequence for PR-39 shows that both the signal sequences and the propart are partly conserved.
  • the C-terminal ends of the cathelin parts differ in the six last residues: in prepro-FALL-39 the end is a typical dibasic cleavage site (KR, residue 130-131) instead of an elastase site (SV) in prepro-PR-39.
  • Fig. 2 (a) Overexposure of the film in Fig. 2 (a) showed a faint signal from peripheral blood leukocyte RNA.
  • a filter preloaded with human mRNA from heart, brain, placenta, lung, liver, skeletal muscle, kidney and pancreas gave no signals.
  • FALL-39 was synthesized with residues 132-170 of the precursor structure.
  • FIG. 3 shows an Edmundson wheel plot for residues E13-V34 in the sequence for FALL- 39.
  • the dotted line divides the helix into a hydrophilic and a hydrophobic part.
  • the start of the helix is at the top of the wheel.
  • a plot of residues F7-V34 does not give a perfect amphipathic helix.
  • the synthetic peptide was investigated for its helix content by CD spectroscopy.
  • Fig. 4 shows CD spectra of a water solution of synthetic FALL-39 (86 ⁇ M) and the same solution after adding 2% of 50 times concentrated Medium E. Values below 190 nm are believed to be artifacts from the solvents. About 50% of helix formation was induced in the presence of 30% trifluoroethanol.
  • Fig. 5 shows the inhibition zones produced by FALL-39 on E.coli D21 accor ding to Hultmark (Hultmark, D., Engstr ⁇ m, A., Andersson, K., Steiner, H., Bennich, H. and Boman, H.G. (1983) EMBO J. 2, 571-576).
  • the bacteria were grown in thin agarose plates with LB medium supplemented with basal medium E (MedE).
  • the zone area should normally be a function of the log of the amounts of peptide applied to each well as shown in the upper curve. In the absence of MedE there is a concentration dependence only for the three highest amounts of peptide.
  • the graph also shows the zones obtained with our standard assay conditions.
  • FALL-39 does not seem to be cytotoxic for human cells.
  • the present invention relates to the provision of novel human antibacterial peptides which are free of cystein.
  • the sequence of the clone for prepro-FALL-39 indicates that the molecule belongs to the family of cathelin like precursors.
  • FALL-39 residues 13-34, inclusive are capable of forming a perfect amphiphatic helix (cf. Fig. 4).
  • Medium E is a basal salt medium designed specially for E.coli (Vogel, H.J. and D.M. Bonner (1956) J. Bio . Chem. 218 , 97-106).

Abstract

New polypeptides comprising the following amino acid sequence: E K I G K E F K R I V O R I K D F L R N L V, and functional derivatives and pharmaceutically acceptable salts thereof; pharmaceutical composition containing such polypeptides as active ingredients; a method for inhibiting microbial growth in animals including man; and a cDNA sequence capable of expressing a precursor protein to such polypeptide.

Description

A new human peptide antibiotic (FALL-39) and its use
The present invention relates to a new human polypeptide (FALL-39), its therapeutic use, pharmaceutical compositions containing same as an active ingredient, a cDNA sequence, and a method for inhibiting microbial growth.
Animal peptide antibiotics were discovered about 15 years ago and in September 1993 at least some 50 different sequences were known (for reviews see Goode, J. ed (1994) Antimicrobial Peptides , Ciba Symposium No . 186. (John
Wiley & Sons Ltd. Chichester, P019 1UD, UK); Boman, H.G. (1995) Annu. Rev. Immunol. 13, in press). On a chemical basis , these peptides can be divided into five groups :
i) Linear peptides without Cys, often forming amphipathic helices,
ii) Linear peptides with a high proportion of certain residues like Pro and Arg,
iii) Loop-forming peptides with one disulfide bond, iv) Peptides with two or more disulfide bonds, normally forming β-sheet structures, and
v) Peptides derived from larger molecules with other known functions.
The peptides most studied are the cecropins and the magainins in the first group and the defensin family in the fourth group.
On a functional basis, the animal peptide antibiotics can be divided into two groups: Those which like the defensins accumulate in the granule of phagocytes and those which are delivered into body fluids or epithelial layers. Peptides which have evolved to kill engulfed microbes inside phagocytic vacυoles can in released form be cytotoxic to the host and this is the case for the defensins
(Lehrer, R.I., Lichtenstein, A.K. and Ganz, T. (1993) Annu. Rev. Immunol . 11 , 105-128). On the other hand peptides like the insect cecropins (Boman, H.G., Faye, I., Gudmundsson, G.H., Lee, J.-Y. and Lidholm. D.A. (1991) Eur. J. Biochem. 201, 23-31) and insect defensins
(Hoffmann, J.A. and Hetru, C. (1992) Immunol . Today 13 , 411-415) which are delivered into the circulatory system are not harmful to the producing organism.
Animal peptide antiobiotics differ from the "classical" antibiotics in several respects (Boman, H.G. (1995) Annu. Rev. Immunol . 13 , in press; Boman, H.G. (1994) in Antimicrobial Peptides . Ciba Symposium No. 186 , pp 1-4, ed. Goode, J. (John Wiley & Sons Ltd. Chichester, P019 1UD, UK)). The animal peptides are all gene encoded and they are made as preproproteins which are processed to the mature peptide by defined pathways. The actual processing steps have been studied for cecropins (Boman, H.G., Boman, I.A., Andreu, D., Li, Z.-q., Merrifield, R.B.,
Schlenstedt, G. and Zimmermann, R. (1989) J. Biol . Chem. 264 , 5852-5860), for Bac5 and Bac7 (Scocchi, M.,
Skerlavaj, B., Romeo, D. and Gennaro, D. (1992)
Eur. J.Biochem. 209 , 589-595) and for myeloid defensins (Ganz, T., Liu, L., Valore, E.V. and Oren, A. (1993) Blood 82, 641-650), but in most other cases the processing is so far only predicted or simply unknown. This biosynthesis is conceptually different from the one for microbial peptide antibiotics like gramicidin or penicillin which are made by a set of different enzymes that sequentially add different amino acid residues. Animal and microbial antibiotics differ also functionally: Microbial anticiotics are often referred to as "secondary metabolites" (Chadwick, D.J. and J. Whelan, ed. (1992) Secondary Metabolites: Their
Function and Evolution. Ciba Foundation Symposium 171.
(John Wiley & Sons Ltd., Chichester, P019 1UD, UK) while the animal peptide antibiotics are considered as important parts of the innate immunity of the producing organism (Boman, H.G. (1995) Annu. Rev. Immunol . 13 , in press).
So far, most of the animal peptide antibiotics have been purified from blood (hemolymph) or blood cells using as assay the antimicrobial activity. cDNA and genomic clones were isolated later with the help of probes desig ned from the known amino acid sequences. However, Romeo and Zanetti discovered that a number of antibacterial peptides from different mammals contained a conserved proregion very similar to cathelin (Zanetti, M., Del Sal, G., Storici, P., Schneider, C. and Romeo, D. (1993) J.
Biol. Chem. 266, 522-526), a protein isolated from pig leucocytes and reported to be an inhibitor of Cys-containing proteases (Ritonja, A., Kopitar, M., Jerala, R. and Turk, V. (1989) FEES Lett . 255, 211-214). This finding was used by the Trieste groups for 3'- and 5'-RACE experiments that gave the cDNA sequences corresponding to both previously known peptide antibiotics (Storici, P. and Zanetti, M (1993) Biochem. Biophys . Res . Commun. 196, 1363-1368; Del Sal, G., Storici, P., Schneider, C,
Romeo, D. and Zanetti, M. (1992) Biochem. Biophys . Res.
Com. 187, 467-472; Storici, P. and Zanetti, M (1993)
Biochem. Biophys. Res . Comm. 196 , 1058-1065) and to novel molecules (PMAP-36) which were synthesized and found to be antibacterial (Storici, P., Scocchi, M., Tossi, A.,
Gennaro, R. and Zanetti, M. (1994) FEBS Lett 337 , 303- 307).
It is generally known that resistance to classical antibiotics is becoming an increasing clinical problem. The present invention has for its main object to provide new polypeptides of biological activity but different from classical antibiotics, such as penicillins and tetracyclins.
Another object of the invention is to provide new human polypeptides having antimicrobial activity against bacteria without being cytotoxic.
Yet another object of the invention is to provide pharmaceutical compositions containig such polypeptides as active ingredients.
Still another object of the invention is to provide a method for inhibiting microbial growth in animals including man. A further object of the invention is to provide the clone enabling expression of a precursor protein for the new polypeptides.
For these and other objects which will be clear from the following disclosure the invention provides for a polypeptid, comprising the following amino acid sequence:
E K I G K E F K R I V O R I K D F L R N L V including also functional derivatives and pharmaceutical acceptable salts thereof.
Another aspect of the invention is reflected by the provision of a polypeptide comprising the following amino sequence:
F A L L G D F F R K S K E K I G K E F K R I V O R I K D F
L R N L V P R T E S also including functional derivatives and pharmaceutically acceptable salts thereof.
The new polypeptides according to the invention find therapeutic applications, such as used as antimicrobial agents, such as antibacterial agents.
The invention also includes pharmaceutical compositions containing as active ingredients one or more of the polypeptides according to the invention in an effective amount together with a pharmaceuticallly acceptable carrier or diluent.
Said amount is suitably antimicrobially active, such as antibacterially active. The carrier or diluent is preferably adapted for oral, intravenuous, intramuscular or subcutaneous administration. Finally, the invention includes a method for inhibiting microbial growth in animals, such as mammals including man, said method comprising the step of administering to an animal subject to a disorder caused by microbial attack a polypeptide as defined above, a functional derivative or a pharmaceutically acceptable salt thereof, or a composition as defined above in an inhibitory amount.
Such method can be directed to intestinal use constituted by oral administration of a composition as defined above in a slow release form. The method can also be directed to administration by injection of such a composition in an injectable dose form.
With regard to the expression "functional derivatives thereof" it is well known in regard to the technical area to which the present invention pertains that minor amino acid substitutions can be made to the polypeptide which do not affect or do not substantially affect the function of the polypeptide. Determination of conceivable substitutions is accomplished according to procedures well known to those skilled in the art. Thus, all polypeptides having substantially the same amino acid sequence, substantially the same helical structure and substantially the same biological activity, such as antimicrobial and lytic activity, are within the scope of this invention.
Also within the scope of the present invention are pharmaceutically acceptable salts of the polypeptides of this invention. Such salts are formed by methods well known to skilled artisans. Thus, for example base salts of the polypeptides can be prepared according to conventional methods. When in the instant disclosure including the claims the term polypeptide is used said term is intended to include both functional derivatives and pharmaceutically acceptable salts of the polypeptides.
The active polypeptide according to the present invention can be formulated for use in human or veterinary medicine for therapeutic or prophylactic use. The active preparations are normally administered orally, rectally or parenterally, such as by injection in the form of a pharmaceutical preparation or composition comprising the active constituents in combination with a pharmaceutically acceptable carrier which may be solid, semi-solid or liquid, or contained in a capsule, such as when orally admi nistered. The administration may also take the form of to pical application. As examples of pharmaceutical preparations there may be mentioned tablets, drops, solutions and suppositories. Usually, the active constituent constitutes the minor part of the preparation, such as from about 0.1 to about 50% thereof based on weight.
In order to prepare pharmaceutical compositions in the form of dose units for oral application the polypeptide of the invention can be mixed with a solid, pulverulent or other carrier, for example lactose, saccharose, sorbitol, mannitol, starch, such as potatoe starch, corn starch, millopectine, cellulose derivative or gelatine, and may also include lubricants, such as magnesium or calcium stearate, or polyethylene glycol waxes compressed to the formation of tablets or bodies for dragees. The dose units may also be presented in a coated form of enteric type.
By using several layers of the carrier or diluent tablets operating with slow release can be prepared.
Liquid preparations for oral application or for injection can be made in the form of elexirs, syrups or suspensions, for example solutions containing from 0.1 to 20% by weight of active substance, sugar and a mixture of ethanol, water, glycerol, propyleneglycol and possibly other additives of a conventional nature.
The scientific research from which the present invention has emerged, have shown that the gene for the peptide FALL-39 is expressed mainly in bone marrow and in testis, both of which organs are not often infected. An important aspect of the present invention is the use of the polypeptides of the invention in products for the treatment of urinary tract infections and sexually transmitted diseases, such as disorders created by clamydia, gonococchi and HIV virus. Such treatment can be performed by using a solution of the antimicrobially active polypeptide in lavage of invaded organs, cavities or tubes, such as the urinary tract, the bladder, urethral organs and passages, renal organs and associated passages, male genital organs and associated passages, etc.
The dose by which the active constituent is administered may vary within wide limits and is dependent on different factors, such as the seriousness of the disorder, the age and the weight of the patient and can be adjusted individually.
The present invention will now be described by nonlimiting examples through the following disclosure. In this disclosure the new 39 residue polypeptide will be designated FALL-39, the peptide being named after the first four amino acid residues of the peptide. The following disclosure will be made with reference to the appended drawings, wherein:
Figure 1 shows the cDNA sequence for prepro-FALL-39 with translation of the open reading frame;
Figure 2 illustrates two Northern blot analyses with RNA from a leucemic child, a healthy child and a child with leucemia in remission in comparison with mRNA from human bone marrow;
Figure 3 shows an Edmundson wheel plot for residues E13-V34 in the sequence of FALL-39;
Figure 4 shows CD spectra of a water solution of synthetic FALL-39 before and after adding of medium E; and Figure 5 shows an inhibition zone assay for FALL-39 on E.coli.
Materials and Methods
cDNA Cloning
A liquid lysate of a human bone marrow λgtll cDNA library (Clontech) was used to isolate template DNA by
Wizard DNA purification system (Promega). The following three primers, 5'ACCATGGAGACCCAGAGGGC,
5'CCTGTAGCTGAGGGCCTGGG and
5'TCCA(A/G)(C/T)TCCA(A/G)CA(A/G)(A/G/C/T)C(G/T)(A/G)TA,
(corresponding to underlined or dashed sequences in Fig.
1) were directed to the signal sequence and the proregion of PR-39. These primers (at 0.4 μM) and template DNA
(6ng/μl) were used in a PCR experiment with the following thermal cycle profile; 95°C 3 min, 40 cycles of 95°C l min, 55°C l min, 72°C l min and an extension step of 72°C 7 min. Analyses of the reaction mixtures showed two bands of the expected sizes. The bands were purified and cloned into the pCR TMII vector by a TA cloning kit (Invitrogen) .
Positive clones were sequenced by the dideoxy method with a sequenase kit (U.S. Biochemicals). Sequencing confirmed that the two PCR bands were similar to the start of the open reading frame for preproPR-39. The larger band (183 bp) was radioactively labelled and used as a probe for screening of a human bone marrow cDNA library (λgtll from Clontech). About 150 000 pfu were screened using Hybond-N nylon membrane (Amersham) and positive plaques were purified to homogeneity. λDNA was prepared by a glycerol step gradient (Maniatis, T., Fritsch, E.F. and Sambrook, J. (1989) Molecular cloning. A laboratory manual (Cold Spring Harbor Laboratory Press, Cold Spring Harbor)). The cDNA inserts were subcloned into pBluescript KS vector (Stratagene) and sequenced by the solid-phase sequencing method (Hultman, T., Bergh, S. and Uhlén, M. (1991) Bio Techniques 10, 84-93) on an A.L.F. (Pharmacia, Sweden) and an Applied Biosystems sequenator. The screening hybridization was done in 6xSSC, 5xDenhardt's, 1% SDS and 100 yg/ml of denatured herring sperm DNA at 55°C overnight. Final washing was in 2xSSC and 0.1% SDS at 55°C.
Nucleic acid analysis
Total RNA was isolated by an RNA separator kit
(Clontech) and two filters preloaded with mRNA from different human tissues (Clontech) were used for hybridization. RNA was separated by electrophoresis in a denaturating formaldehyde gel and the hybridizations were carried out under high stringency conditions (Maniatis T., Fritsch, E.F. and Sambrook, J. (1989) Molecular cloning. A laboratory manual (Cold Spring Harbor Laboratory Press, Cold Spring Harbor). Peptide synthesis
Chemical peptide synthesis was carried out with an automatic peptide synthesizer (Applied Biosystem 430A) using standard solid-phase procedure (reviewed by
Merrifield (Merrifield, R.B. (1986) Science 232 , 341-347). Starting from t-BOC-Ser(benzyl)-OCH2-PAM resin (0.67 mmol/g), t-BOC amino acid derivatives were used with reactive side chains protected as follows: Ser and Thr with benzyl, Lys with 2-chlorobenzyl-oxycarbonyl, Glu and Asp with benzyl ester, Arg with 4-toluene-sulfonyl. A standard program with preformed symmetric anhydrides and preformed 1-hydroxybenzotriazole-esters was used for the synthesiss. Double couplings were carried out for Arg, Gln and Asn. The completed 39-residue peptide was cleaved from the resin with liquid hydrogen fluoride:anisole:methyl sulfide (10:1:1) for 60 min at 0°C. The cleavage product was washed with ether in order to remove the scavengers and then extracted into 30% acetic acid and lyophilized. The peptide was purified by HPLC on a Vydac C18 column, utilizing a linear gradient of 80% acetonitrile (20-75% for 30 min) in 0.1% trifluoroacetic acid. The molecular mass was analysed by a time-of-flight mass spectrometer (Biolon 20). The CD spectra were recorded with a J-710 spectropolarimeter (JASCO, Japan) at the BioScience Center of Pharmacia.
Antibacterial assay.
The antibacterial activity was recorded with the inhibition zone assay and the final result obtained from a dilution series is given as the lethal concentration (the LC-value, the lowest concentration that would inhibit bacterial growth (Hultmark, D., Engström, A., Andersson, K., Steiner, H., Bennich, H. and Boman, H.G. (1983) EMBO J. 2, 571-576)). EXAMPLE 1
Isolation of a cDNA clone for FALL-39 and its characteristics. Initially 9 primers were designed using both sequence information from the porcine gene for prepro-PR-39
(Agerberth, B., Lee, J-Y., Bergman, T., Carlquist, M., Boman, H.G., Mutt, V., Jörnvall, H. (1991) Eur.J.Biochem. 202 , 849-854) and conserved regions of the preprosequence in all published sequences in the "cathelin family"
(Storici, P. and Zanetti, M. (1993) Biochem. Biophys . Res Commun. 196, 1363-1368; Del Sal, G., Storici, P.,
Schneider, C, Romeo, D. and Zanetti, M. (1992) Biochem. Biophys. Res . Com. 187, 467-472; Storici, P. and Zanetti, M. (1993) Biochem. Biophys . Res . Comm. 196 , 1058-1065); Storici, P., Scocchi, M., Tossi, A., Gennaro, R. and
Zanetti, M. (1994) FEBS Lett. 337 , 303-307). A total of 9 primers in 11 combinations were utilized for PCR, using as template DNA froma human bone marrow cDNA library. Analyses of these 11 reaction mixtures showed that only two combinations gave clear bands of the expected sizes.
Cloning and sequencing showed both bands to be cathelin- like in structure. As the next step the larger band (183 bp) was used as a probe to screen a human bone marrow library. A number of positive clones were isolated. Partial sequences of the inserts indicated that all clones contained information for the preproform of a novel 39- residue peptide, FALL-39.
EXAMPEL 2
Eight positive clones were fully sequenced and gave the same cDNA structure for FALL-39 as shown in Fig. 1 illustrating cDNA sequence for prepro-FALL-39 with translation of the open reading frame. The putative peptide
FALL-39 is indicated by a dashed underlining. The regions towards which the three succesful primers were directed are indicated as a full line for the corresponding sequence and dotted lines for the two complementary sequences. The cathelin sequence starts with bases 101-115 , translated to QVLSY . * is a stop signal. A comparison with the genomic DNA sequence for PR-39 shows that both the signal sequences and the propart are partly conserved. However, the C-terminal ends of the cathelin parts differ in the six last residues: in prepro-FALL-39 the end is a typical dibasic cleavage site (KR, residue 130-131) instead of an elastase site (SV) in prepro-PR-39. The mature peptides are also totally different, there is no homology at all and the motifs PRP and PP, typical of proline-argininerich peptides, are absent in FALL-39. A search in GenBank for sequences with similarity to FALL-39 gave no significant relations to published peptides or proteins. It is therefore concluded that the putative peptide FALL-39 has a novel sequence.
EXAMPLE 3
Three Northern blot analyses were carried out. One with a commercial sample of mRNA from human bone marrow and three samples of total RNA prepared from different human bone marrow samples. In addition we have used two commercial filters preloaded with mRNA from 16 different human tissues. The two filters that gave signals are shown in Fig. 2 showing two Northern blot analyses: (a) with total RNA from bone marrow from a child with T cell leucemia (A), a healthy child (B) and child with leucemia in remission (C) compared to mRNA from human bone marrow (Clontech); (b) a commercial preloaded filter with human mRNA from spleen, thymus, prostate, testis, ovary, small intestine, colon and peripheral blood leucocytes (PBL). For both blots an actin probe was used to demonstrate the amounts of RNA applied. Clear signals were obtained only for bone marrow and testis from healthy individuals.
Overexposure of the film in Fig. 2 (a) showed a faint signal from peripheral blood leukocyte RNA. A filter preloaded with human mRNA from heart, brain, placenta, lung, liver, skeletal muscle, kidney and pancreas gave no signals.
EXAMPLE 4 Solid-phase synthesis of FALL-39 and a study of its properties.
FALL-39 was synthesized with residues 132-170 of the precursor structure. The synthetic peptide was analysed in a time-of-flight mass spectrometer and found to have an Mr=4707.9. The peak was slightly asymmetric indicating some decomposition during the run. The mass value is therefore in reasonable agreement with the calculated value of 4711.6 for FALL-39.
An Edmundson wheel plot of the FALL-39 sequence showed that the central part of the molecule (residues 13- 34) could form a perfect amphipathic helix as seen in Fig. 3, a property often found for antibacterial peptides like the cecropins and the magainins. Fig. 3 shows an Edmundson wheel plot for residues E13-V34 in the sequence for FALL- 39. The dotted line divides the helix into a hydrophilic and a hydrophobic part. The start of the helix is at the top of the wheel. A plot of residues F7-V34 does not give a perfect amphipathic helix. The synthetic peptide was investigated for its helix content by CD spectroscopy. The spectra of an 86 μM solution of synthetic FALL-39 in water indicated a lack of structure (random coil) while the addition of Medium E induced about 30% of helix formation in the peptide as seen in Fig. 4. Fig. 4 shows CD spectra of a water solution of synthetic FALL-39 (86 μM) and the same solution after adding 2% of 50 times concentrated Medium E. Values below 190 nm are believed to be artifacts from the solvents. About 50% of helix formation was induced in the presence of 30% trifluoroethanol.
EXAMPLE 5
Preliminary experiments showed FALL-39 to be active against Escherichia coli and Bacillus megaterium, providing that the basal Medium E (MedE) (Vogel, H.J. and D.M. Bonner (1956) J . Biol . Chem. 218 , 97-106) was added to the LB plates (which contains 0.9% NaCl). Fig. 5 shows the inhibition zones produced by FALL-39 on E.coli D21 accor ding to Hultmark (Hultmark, D., Engstrόm, A., Andersson, K., Steiner, H., Bennich, H. and Boman, H.G. (1983) EMBO J. 2, 571-576). The bacteria were grown in thin agarose plates with LB medium supplemented with basal medium E (MedE). The zone area should normally be a function of the log of the amounts of peptide applied to each well as shown in the upper curve. In the absence of MedE there is a concentration dependence only for the three highest amounts of peptide. The graph also shows the zones obtained with our standard assay conditions. The LC-value
(Hultmark, D., Engström, A., Andersson, K., Steiner, H., Bennich, H. and Boman, H.G. (1983) EMBO J. 2 , 571-576) obtained from the data in the upper curve was 0.7 μM while a calculation based on the three highest amounts of peptide in LB medium gave an LC-value of 8.9 μM. A similar salt dependance was found also for the action of FALL-39 on B. megaterium Bmll (data not shown) giving LC-values of 0.2 μM in MedE. The LC-values obtained for the porcine peptides cecropin PI and PR-39 on E.coli D21 were 0.4 and 0.3, respectively (Boman, H.G., Agerberth, B. and Boman, A. (1993) Infect . Immun. 61 , 2978-2984). Flat and nonlinear concentration dependences as seen for the standard assay conditions in Fig. 4 are difficult to interpret and the LC-value from the three highest amounts may be misleading. The wells in the bacterial plates with the highest amounts of FALL-39 sometimes showed a white halo at the edges which could indicate that the peptide was bound to the agarose. FALL-39 did not give any detectable lysis of human red cells. The presence of 10 μM of FALL-39 during five days of incubation did not affect the incorporation of H-thymine in triplicate cultures of human peripheral blood lymphocytes (PBL) stimulated with PHA. Thus, FALL-39 does not seem to be cytotoxic for human cells.
The present invention relates to the provision of novel human antibacterial peptides which are free of cystein. The sequence of the clone for prepro-FALL-39 indicates that the molecule belongs to the family of cathelin like precursors. In the peptide FALL-39 residues 13-34, inclusive, are capable of forming a perfect amphiphatic helix (cf. Fig. 4). It is obvious that the addition of Medium E to a water solution of FALL-39 induces helix formation in accordance with Fig. 4 and at the same time the activity against E.coli is dramatically improved (cf. Fig. 5). It is therefore concluded that the helix formation is of importance for the biological activity of FALL- 39. Medium E is a basal salt medium designed specially for E.coli (Vogel, H.J. and D.M. Bonner (1956) J. Bio . Chem. 218 , 97-106).
As previously indicated resistance to classical antibiotics is becoming an increasing clinical problem (cf. Chin, G.J. and Marx, J. ed. (1994) Science 264 , 359-393). This is particularly so since vancomycin resistance recently has been found in clinical isolates (Swartz, M.N. (1994) Proc. Natl . Acad. Sci. USA 91 , 2420-2427). Against this background the new human peptides according to the present invention are of special interest. The LC-value for FALL-39 on E.coli D21 is 0.7 μM and is comparable to tetracycline having an LC-value in the same assay of 0.9 μM (Boman, H.G., Agerberth, B. and Boman, A. (1993)
Infect . Immun. 61 , 2978-2984). No cytotoxic properties have been found for the peptides according to the present invention. The fact that the peptides of the invention are cystein free makes synthesis easier and cheaper. The peptides thus constitute an important progress in the field of antibacterially active agents for human use.

Claims

PATENTKRAV
1. A polypeptide comprising the following amino acid sequence: E K I G K E F K R I V O R I K D F L R N L V and functional derivatives and pharmaceutically acceptable salts thereof.
2. A polypeptide (FALL-39) comprising the following amino acid sequence:
F A L L G D F F R K S K E K I G K E F K R I V O R I K D F L R N L V P R T E S and functional derivatives and pharmaceutically acceptable salts thereof.
3. A polypeptide according to claim 1 or 2 for therapeutic use.
4. A polypeptide according to claim 3 for use as an antimicrobial agent.
5. A polypeptide according to claim 4 for
antibacterial use.
6. A pharmaceutical composition containing as an active ingredient the polypeptide according to claim 1 or 2 in an effective amount together with a pharmaceutically acceptable carrier or diluent.
7. A pharmaceutical composition according to claim 4, wherein said amount is antimicrobially active.
8. A pharmaceutical composition according to claim 5, wherein said amount is antibacterially active.
9. A pharmaceutical composition according to any of claims 6 to 8, wherein said carrier or diluent is adapted for oral, intravenous, intramuscular or subcutaneous administration.
10. A method for inhibiting microbial growth in animals, such as mammals including man, comprising the step of administering to an animal subject to a disorder caused by microbial attack a polypeptide according to claim 1 or 2 or a composition according to any of claims 6 to 9 in an inhibitory amount.
11. A method according to claim 10 for inhibiting bacterial growth.
12. A method according to claim 10 or 11, comprising administration by injection of a composition according to any of claims 6 to 9 in an injectable dose form.
13. A cDNA clone having the following sequence:
Figure imgf000019_0001
PCT/SE1995/001030 1994-09-13 1995-09-12 A new human peptide antibiotic (fall-39) and its use WO1996008508A1 (en)

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WO2002060468A2 (en) * 2001-01-30 2002-08-08 University Of Iowa Research Foundation Antiviral activities of primate theta defensins and mammalian cathelicidins
WO2002095076A2 (en) * 2001-05-23 2002-11-28 Kabushiki Kaisha Toyota Chuo Kenkyusho Modified polypeptides having protease-resistance and/or protease-sensitivity
WO2003039443A2 (en) * 2001-11-05 2003-05-15 Deutsches Krebsforschungszentrum Novel genetic markers for leukemias
US7173007B1 (en) * 2003-04-02 2007-02-06 The Regents Of The University Of California Therapy for microbial infections
US7718618B2 (en) 2003-10-21 2010-05-18 The Regents Of The University Of California Human cathelicidin antimicrobial peptides
US7776823B2 (en) 2003-10-21 2010-08-17 The Regents Of The University Of California Human cathelicidin antimicrobial peptides
US7777000B2 (en) 2003-03-06 2010-08-17 The Regents Of The University Of California Anti-viral activity of cathelicidin peptides
US8012933B2 (en) 2003-01-29 2011-09-06 Lipopeptide Ab Use of the cathelicidin LL-37 and derivatives therof for wound healing

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US5114424A (en) * 1989-09-07 1992-05-19 Siemens Aktiengesellschaft Multipart planar electrode for an hf-surgery device
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Cited By (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2002060468A2 (en) * 2001-01-30 2002-08-08 University Of Iowa Research Foundation Antiviral activities of primate theta defensins and mammalian cathelicidins
WO2002060468A3 (en) * 2001-03-30 2003-01-23 Univ Iowa Res Found Antiviral activities of primate theta defensins and mammalian cathelicidins
WO2002095076A2 (en) * 2001-05-23 2002-11-28 Kabushiki Kaisha Toyota Chuo Kenkyusho Modified polypeptides having protease-resistance and/or protease-sensitivity
WO2002095076A3 (en) * 2001-05-23 2003-09-25 Toyoda Chuo Kenkyusho Kk Modified polypeptides having protease-resistance and/or protease-sensitivity
WO2003039443A2 (en) * 2001-11-05 2003-05-15 Deutsches Krebsforschungszentrum Novel genetic markers for leukemias
WO2003039443A3 (en) * 2001-11-05 2004-08-19 Deutsches Krebsforsch Novel genetic markers for leukemias
US8012933B2 (en) 2003-01-29 2011-09-06 Lipopeptide Ab Use of the cathelicidin LL-37 and derivatives therof for wound healing
US9125875B2 (en) 2003-01-29 2015-09-08 Lipopeptide Ab Use of the cathelicidin LL-37 and derivatives thereof for wound healing
US8936807B2 (en) 2003-01-29 2015-01-20 Lipopeptide Ab Use of the cathelicidin LL-37 and derivatives thereof for wound healing
US8506994B2 (en) 2003-01-29 2013-08-13 Lipopeptide Ab Use of the cathelicidin LL-37 and derivatives thereof for wound healing
US7777000B2 (en) 2003-03-06 2010-08-17 The Regents Of The University Of California Anti-viral activity of cathelicidin peptides
US7173007B1 (en) * 2003-04-02 2007-02-06 The Regents Of The University Of California Therapy for microbial infections
US7776823B2 (en) 2003-10-21 2010-08-17 The Regents Of The University Of California Human cathelicidin antimicrobial peptides
US7718618B2 (en) 2003-10-21 2010-05-18 The Regents Of The University Of California Human cathelicidin antimicrobial peptides

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