WO1998047086A3 - Autonomous intelligent agents for the annotation of genomic databases - Google Patents

Autonomous intelligent agents for the annotation of genomic databases Download PDF

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Publication number
WO1998047086A3
WO1998047086A3 PCT/US1998/007327 US9807327W WO9847086A3 WO 1998047086 A3 WO1998047086 A3 WO 1998047086A3 US 9807327 W US9807327 W US 9807327W WO 9847086 A3 WO9847086 A3 WO 9847086A3
Authority
WO
WIPO (PCT)
Prior art keywords
agents
autonomous
database
annotation
program
Prior art date
Application number
PCT/US1998/007327
Other languages
French (fr)
Other versions
WO1998047086A2 (en
Inventor
R Mark Adams
Original Assignee
Alpha Gene Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Alpha Gene Inc filed Critical Alpha Gene Inc
Priority to AU69677/98A priority Critical patent/AU6967798A/en
Publication of WO1998047086A2 publication Critical patent/WO1998047086A2/en
Publication of WO1998047086A3 publication Critical patent/WO1998047086A3/en

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Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S707/00—Data processing: database and file management or data structures
    • Y10S707/99941—Database schema or data structure
    • Y10S707/99944—Object-oriented database structure
    • Y10S707/99945—Object-oriented database structure processing
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10S—TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10S707/00—Data processing: database and file management or data structures
    • Y10S707/99941—Database schema or data structure
    • Y10S707/99948—Application of database or data structure, e.g. distributed, multimedia, or image

Abstract

A genomic database system that makes use of autonomous agents for providing access to the database. The autonomous agents, which are preferably implemented in a multitasking environment, each seek target data to be processed and then call a program to process the target data. The results of the program are then placed in the database. The autonomous agent model permits the sequence data and processing programs to be changed without the need to be concerned with data synchronization or heterogeneity. The agents may be implemented as object oriented programs that permit the extraction of generic software code in an agent code base. The agents may implement annotation functions, analysis algorithms, or may control the assembly of gene sequences.
PCT/US1998/007327 1997-04-15 1998-04-14 Autonomous intelligent agents for the annotation of genomic databases WO1998047086A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU69677/98A AU6967798A (en) 1997-04-15 1998-04-14 Autonomous intelligent agents for the annotation of genomic databases

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US08/837,963 1997-04-15
US08/837,963 US5966711A (en) 1997-04-15 1997-04-15 Autonomous intelligent agents for the annotation of genomic databases

Publications (2)

Publication Number Publication Date
WO1998047086A2 WO1998047086A2 (en) 1998-10-22
WO1998047086A3 true WO1998047086A3 (en) 1999-02-11

Family

ID=25275899

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US1998/007327 WO1998047086A2 (en) 1997-04-15 1998-04-14 Autonomous intelligent agents for the annotation of genomic databases

Country Status (3)

Country Link
US (1) US5966711A (en)
AU (1) AU6967798A (en)
WO (1) WO1998047086A2 (en)

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US20030097222A1 (en) * 2000-01-25 2003-05-22 Craford David M. Method, system, and computer software for providing a genomic web portal
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US6772026B2 (en) 2000-04-05 2004-08-03 Therics, Inc. System and method for rapidly customizing design, manufacture and/or selection of biomedical devices
US7246315B1 (en) 2000-05-10 2007-07-17 Realtime Drama, Inc. Interactive personal narrative agent system and method
US6931326B1 (en) 2000-06-26 2005-08-16 Genaissance Pharmaceuticals, Inc. Methods for obtaining and using haplotype data
US6681186B1 (en) 2000-09-08 2004-01-20 Paracel, Inc. System and method for improving the accuracy of DNA sequencing and error probability estimation through application of a mathematical model to the analysis of electropherograms
WO2002033520A2 (en) * 2000-10-18 2002-04-25 Genomic Health, Inc. Genomic profile information systems and methods
US8010295B1 (en) 2000-11-06 2011-08-30 IB Security Holders LLC System and method for selectively classifying a population
US20020129342A1 (en) * 2001-03-07 2002-09-12 David Kil Data mining apparatus and method with user interface based ground-truth tool and user algorithms
CA2377213A1 (en) * 2001-03-20 2002-09-20 Ortho-Clinical Diagnostics, Inc. Method for providing clinical diagnostic services
WO2002085285A2 (en) * 2001-04-18 2002-10-31 Wyeth Methods and reagents for regulating bone and cartilage formation
US7251568B2 (en) * 2001-04-18 2007-07-31 Wyeth Methods and compositions for regulating bone and cartilage formation
US6996477B2 (en) 2001-04-19 2006-02-07 Dana Farber Cancer Institute, Inc. Computational subtraction method
US7155453B2 (en) * 2002-05-22 2006-12-26 Agilent Technologies, Inc. Biotechnology information naming system
US20020194154A1 (en) * 2001-06-05 2002-12-19 Levy Joshua Lerner Systems, methods and computer program products for integrating biological/chemical databases using aliases
US20020194201A1 (en) * 2001-06-05 2002-12-19 Wilbanks John Thompson Systems, methods and computer program products for integrating biological/chemical databases to create an ontology network
US20040267458A1 (en) * 2001-12-21 2004-12-30 Judson Richard S. Methods for obtaining and using haplotype data
US20050267971A1 (en) * 2004-04-01 2005-12-01 Fritz Charles W System and method of using DNA for linking to network resources
US7937250B2 (en) * 2007-04-27 2011-05-03 International Business Machines Corporation Method and system for addressing non-functional concerns
US8176074B2 (en) * 2009-10-28 2012-05-08 Sap Ag Methods and systems for querying a tag database
WO2011137368A2 (en) 2010-04-30 2011-11-03 Life Technologies Corporation Systems and methods for analyzing nucleic acid sequences
US9268903B2 (en) 2010-07-06 2016-02-23 Life Technologies Corporation Systems and methods for sequence data alignment quality assessment
US9317861B2 (en) * 2011-03-30 2016-04-19 Information Resources, Inc. View-independent annotation of commercial data

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Also Published As

Publication number Publication date
WO1998047086A2 (en) 1998-10-22
US5966711A (en) 1999-10-12
AU6967798A (en) 1998-11-11

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