WO2001045750A1 - Method for preventing an anaphylactic reaction - Google Patents

Method for preventing an anaphylactic reaction Download PDF

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Publication number
WO2001045750A1
WO2001045750A1 PCT/US2000/035064 US0035064W WO0145750A1 WO 2001045750 A1 WO2001045750 A1 WO 2001045750A1 US 0035064 W US0035064 W US 0035064W WO 0145750 A1 WO0145750 A1 WO 0145750A1
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Prior art keywords
nucleic acid
acid molecule
immunomodulatory nucleic
allergen
immunomodulatory
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PCT/US2000/035064
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French (fr)
Inventor
Eyal Raz
Anthony A. Horner
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The Regents Of The University Of California
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Priority to AU25937/01A priority Critical patent/AU2593701A/en
Publication of WO2001045750A1 publication Critical patent/WO2001045750A1/en

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/35Allergens
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/60Medicinal preparations containing antigens or antibodies characteristics by the carrier linked to the antigen
    • A61K2039/6025Nucleotides

Definitions

  • the invention is in the field of immune response modulation, and in particular to reducing an anaphylactic hypersensitivity response.
  • anaphylaxis is a life-threatening hypersensitivity response in which IgE/Fc ⁇ RI mediated systemic mast cell degranulation occurs.
  • IgE/Fc ⁇ RI mediated systemic mast cell degranulation
  • only a small fraction of allergic individuals develop anaphylactic hypersensitivities.
  • the true incidence of anaphylaxis and anaphylactic hypersensitivities is not known; however, one study proposes that 3.2 cases of anaphylaxis per 100,000 people occur each year, that 40% are misdiagnosed, and that 5% of cases are fatal. Sorenson et al. (1989) Allergy 44 :288-290.
  • Of particular concern in the case of food allergies is that many anaphylactic reactions occur in individuals after the accidental injection of known allergens. Sampson et al. (1992) N. Engl. J. Med. 327:380-384.
  • allergen immunotherapy has a limited role in allergen desensitization, mainly due to serious side effects.
  • One of the side effects of this approach is an anaphylactic reaction that can lead to death.
  • allergen avoidance is generally the only safe option for preventing anaphylaxis.
  • treatment strategies that prevent the anaphylactic hypersensitivity response. The present invention addresses this need.
  • the invention provides methods for reducing the risk of an anaphylactic hypersensitivity response to an allergen in a subject.
  • the invention further provides methods for reducing the severity of an anaphylactic hypersensitivity response to an antigen in a subject.
  • these methods comprise administering an immunomodulatory nucleic acid molecule to the subject.
  • the methods comprise co-administering antigen with the immunomodulatory nucleic acid molecule to the subject.
  • the antigen is administered in close spatial proximity to the immunomodulatory nucleic acid molecule.
  • the antigen is an allergen
  • the immunomodulatory nucleic acid molecule is administered as an allergen- immunomodulatory nucleic acid molecule conjugate.
  • the antigen is administered in admixture with the immunomodulatory nucleic acid molecule.
  • the invention provides an advantage over traditional, antigen-based desensitization therapies, in that untoward side effects, including death, associated with such therapies are avoided.
  • Figure 1 is a timetable for vaccination, sensitization, and anaphylactic challenge.
  • Figure 2 is a graph depicting plasma histamine levels after anaphylactic challenge in pACB-LacZ vaccinated mice.
  • Figure 3 is a graph depicting serum antibody and cytokine responses of pACB-LacZ vaccinated mice.
  • Figure 4 is a graph depicting plasma histamine levels after anaphylactic challenge in ⁇ Gal/ISS-ODN vaccinated mice.
  • Figure 5 is a graph depicting serum antibody and cytokine responses of ⁇ -Gal/ISS-ODN vaccinated mice.
  • the present invention is based on the discovery that administration of immunomodulatory nucleic acid molecule to a subject reduces the risk of death due to anaphylactic hypersensitivity response.
  • Anaphylactic allergens are those antigens that pose a risk of anaphylactic reaction in hypersensitive individuals.
  • Anaphylaxis is an acute, systemic allergic reaction that occurs after an individual has become sensitized to an antigen. Anaphylaxis is associated with the production of high levels of IgE antibodies and with the release of histamines, which cause muscle contractions, constriction of the airways, and dilation of blood vessels. Symptoms of anaphylactic reactions include hives, generalized itching, nasal congestion, wheezing, difficulty breathing, cough, cyanosis, lightheadedness, dizziness, confusion, slurred speech, rapid pulse, palpitations, nausea and vomiting, abdominal pain or cramping, skin redness or inflammation, nasal flaring, intercostals retractions, etc.
  • the invention provides a safer, and more potent therapeutic advantage, avoiding the disadvantages of traditional, antigen-based immunotherapy.
  • this invention is not limited to particular embodiments described, as such may, of course, vary.
  • the terminology used herein is for the purpose of describing particular embodiments only, and is not intended to be limiting, since the scope of the present invention will be limited only by the appended claims. All scientific and technical terms used in this application have meanings commonly used in the art unless otherwise specified. As used in this application, the following words or phrases have the meanings specified.
  • immunomodulatory nucleic acid molecule refers to a polynucleotide that comprises at least one immunomodulatory nucleic acid moiety. Such immunomodulatory nucleic acid molecules are sometimes referred to in the art as “immunostimulatory sequences” or “ISS” or “ISS-ODN” because of previously described effects on an immune response.
  • immunomodulatory refers to the ability of a nucleic acid molecule to modulate an immune response in a vertebrate host.
  • anaphylactic hypersensitivity response refers to an immediate hypersensitivity reaction. Anaphylaxis can elicit systemic effects, or local (e.g., organ-specific) effects, which result in a change in vital signs. Anaphylactic hypersensitivity can lead to anaphylactic reaction or to anaphylactic shock.
  • oligonucleotide refers to a polymeric forms of nucleotides of any length, either ribonucleotides or deoxyribonucleotides.
  • this term includes, but is not limited to, single-, double-, or multi- stranded DNA or RNA, genomic DNA, cDNA, DNA-RNA hybrids, or a polymer comprising purine and pyrimidine bases or other natural, chemically or biochemically modified, non-natural, or derivatized nucleotide bases.
  • the backbone of the polynucleotide can comprise sugars and phosphate groups (as may typically be found in RNA or DNA), or modified or substituted sugar or phosphate groups.
  • the backbone of the polynucleotide can comprise a polymer of synthetic subunits such as phosphoramidites, and/or phosphorothioates, and thus can be an oligodeoxynucleoside phosphoramidate or a mixed phosphoramidate-phosphodiester oligomer. Peyrottes et al. (1996) Nucl. Acids Res. 24: 1841-1848; Chaturvedi et al. (1996) Nucl. Acids Res. 24:2318-2323.
  • the polynucleotide may comprise one or more L-nucleosides.
  • a polynucleotide may comprise modified nucleotides, such as methylated nucleotides and nucleotide analogs, uracyl, other sugars, and linking groups such as fluororibose and thioate, and nucleotide branches.
  • the sequence of nucleotides may be interrupted by non-nucleotide components.
  • a polynucleotide may be further modified after polymerization, such as by conjugation with a labeling component.
  • Immimomodulatory nucleic acid molecules can be provided in various formulations, e.g., in association with liposomes, microencapsulated, etc., as described in more detail herein.
  • polypeptide refers to a polymeric form of amino acids of any length, which can include coded and non-coded amino acids, chemically or biochemically modified or derivatized amino acids, and polypeptides having modified peptide backbones.
  • the term includes polypeptide chains modified or derivatized in any manner, including, but not limited to, glycosylation, formylation, cyclization, acetylation, phosphorylation, and the like.
  • the term includes naturally-occurring peptides, synthetic peptides, and peptides comprising one or more amino acid analogs.
  • fusion proteins including, but not limited to, fusion proteins with a heterologous amino acid sequence, fusions with heterologous and homologous leader sequences, with or without N-terminal methionine residues; immunologically tagged proteins; and the like.
  • antigen and “epitope” are well understood in the art and refer to the portion of a macromolecule which is specifically recognized by a component of the immune system, e.g., an antibody or a T-cell antigen receptor.
  • the term "antigen” encompasses antigenic epitopes, e.g., fragments of an antigen which are antigenic epitopes.
  • Epitopes are recognized by antibodies in solution, e.g. free from other molecules.
  • Epitopes are recognized by T-cell antigen receptor when the epitope is associated with a class I or class II major histocompatibility complex molecule.
  • the term "antigen” includes allergenic antigens, or allergens. The term further includes allergens that have been modified, and extracts of allergens, e.g., crude extracts, which may comprise more than one allergen.
  • conjugated refers to a chemical association of two molecules, e.g., a nucleic acid molecule and a polypeptide.
  • the chemical association may be covalent or non-covalent.
  • the two molecules can be linked directly, or indirectly, e.g., via a linker ("spacer") molecule, a solid support, and the like.
  • treatment refers to obtaining a desired pharmacologic and/or physiologic effect.
  • the effect may be prophylactic in terms of completely or partially preventing (e.g., reducing the incidence of; reducing the risk of) a disease or symptom thereof and/or may be therapeutic in terms of a partial or complete cure for a disease and/or adverse affect attributable to the disease and/or may be prophylactic in terms of completely or partially preventing (e.g., reducing the incidence of, reducing the risk of) a recurrence of the disease or symptom thereof.
  • Treatment covers any treatment of a disease in a mammal, particularly in a human, and includes: (a) preventing the disease from occurring in a subject which may be predisposed to the disease but has not yet been diagnosed as having it; (b) inhibiting the disease, i.e., arresting its development; (c) preventing recurrence of the disease in a subject which is predisposed to such a recurrence; and (d) relieving, or reducing the severity of, a symptom of the disease.
  • Anaphylaxis is a life-threatening condition; therefore, "treatment,” as used herein in the context of anaphylaxis, includes reducing the risk of death.
  • treatment refers to reducing the incidence of an anaphylactic reaction; reducing the risk that an anaphylactic reaction will occur in a susceptible individual; reducing an anaphylaxis-associated symptom or parameter; reducing the severity of an anaphylaxis-associated symptom or parameter; and reducing the severity of an anaphylactic reaction.
  • subject or “individual” or “patient” refers to the recipient of the therapy to be practiced according to the invention. The subject is generally a mammal. If a mammal, the subject may be a human, but may also be a domestic livestock, laboratory subject or pet animal.
  • exposure to a substance includes both natural, environmental exposure to the antigen as well as administration of the substance to a subject, and as such encompasses both accidental and deliberate exposure to the antigen.
  • the present invention provides methods of reducing an anaphylactic reaction in an individual, methods of reducing a symptom of anaphylaxis, methods of reducing the risk of an anaphylactic response in an individual, and methods of reducing the incidence of anaphylaxis.
  • the methods generally comprise administering an effective amount of an immunomodulatory nucleic acid molecule to an individual.
  • the methods are useful to treat an anaphylactic response.
  • the invention further provides methods of treating anaphylaxis in an individual.
  • the immunomodulatory nucleic acid molecule may be administered alone (e.g., without co- administration of antigen), in admixture with, or in spatial proximation with an antigen.
  • the reduction in an anaphylactic response is antigen specific.
  • antigen-specific is one well understood in the art, and as used herein refers to a reduction in an anaphylactic response to the antigen with which the individual is sensitized, or to closely related ("cross-reactive") antigens, e.g., antigens that share one or more epitopes with the sensitizing antigen.
  • Therapeutic methods of the invention reduce an anaphylaxis-associated parameter or symptom in an individual.
  • an anaphylaxis-associated parameter or symptom is a parameter or symptom associated with, or caused by, an anaphylactic reaction.
  • Anaphylaxis-related symptoms and parameters include, but are not limited to, elevated levels of IgE antibodies, e.g., in the serum or other body fluid; release of hista ines and other mediators produced by mast cells and or basophils, including, but not limited to, leukotrienes (e.g., leukotriene A4), prostaglandins (e.g., prostaglandin D2), serotonin, eosinophil chemotactic factor, neutrophil chemotactic factor, proteases, platelet-activating factor, bradykinin, and cytokines (e.g., IL-1, TNF- ⁇ , IL-2, IL-3, IL-4, IL-5, IL-6, TGF- ⁇ , and GM-CSF); elevated serum levels of histamines; constriction of the airways; hives; generalized itching; nasal congestion; wheezing; difficult breathing; cough; cyanosis; lightheadedness; dizziness
  • an "effective amount" of an immunomodulatory nucleic acid molecule is one that reduces one or more anaphylaxis-associated symptom or parameter in an individual by at least about 10%, at least about 20%, at least about 30%, at least about 40%, at least about 50%, at least about 60%, at least about 70%, at least about 80%, or at least about 90% or more, when compared with the symptom or parameter in the individual not treated with the immunomodulatory nucleic acid molecule, or when compared with a control individual not treated with the immunomodulatory nucleic acid molecule, e.g., a control individual exposed to an antigen but not treated with immimomodulatory nucleic acid molecule.
  • Whether a symptom or parameter associated with anaphylaxis has been reduced can be determined using any known assay or diagnostic method. Methods of measuring levels of histamine and other mediators produced by mast cells or basophils are well known in the art and can be used. In many instances, immunological assays are used, e.g., enzyme-linked immunosorbent assays, using antibody specific for a given mediator. Many such assays are commercially available. Methods of measuring histamine levels are described in the Examples. Subjects suitable for treatment with the methods of the invention
  • Subjects particularly suitable for treatment with any of the subject methods include individuals known to be susceptible to having an anaphylactic reaction to a substance; and individuals suspected of being susceptible to having an anaphylactic reaction to a substance, when compared with a normal individual.
  • any patient with atopy i.e., an individual who has had an allergic reaction, of any severity, to an antigen may be considered at risk of having an anaphylactic reaction to that antigen, and possibly to other antigens.
  • a "normal individual” is one who is not susceptible to having an anaphylactic reaction, i.e., under normal physiological conditions and under normal conditions of exposure to an allergen, a normal individual will not have an anaphylactic reaction or display symptoms of anaphylaxis.
  • Nucleic acid molecules comprising an immunomodulatory nucleic acid molecule which are suitable for use in the methods of the invention include an oligonucleotide, which can be a part of a larger nucleotide construct such as a plasmid.
  • the term "polynucleotide” therefore includes oligonucleotides, modified oligonucleotides and oligonucleosides, alone or as part of a larger construct.
  • the polynucleotide can be single-stranded DNA (ssDNA), double-stranded DNA (dsDNA), single- stranded RNA (ssRNA) or double-stranded RNA (dsRNA).
  • immunomodulatory nucleic acid molecule encompasses an immunomodulatory nucleic acid molecule not conjugated with another moiety (e.g., an allergenic antigen); an immunomodulatory nucleic acid molecule in spatial proximation with an antigen; an immunomodulatory nucleic acid molecule conjugated with another moiety; an immunomodulatory nucleic acid molecule linked with another moiety; and an immunomodulatory nucleic acid molecule in admixture with one or more antigens.
  • immunomodulatory nucleic acid molecule may be administered alone or as part of a larger nucleic acid construct, as part of a conjugate with an antigen, or otherwise in proximate association with an antigen
  • immunomodulatory nucleic acid molecule encompasses an immunomodulatory nucleic acid molecule m proximate association with an antigen
  • the polynucleotide portion can be linearly or circularly configured, or the oligonucleotide portion can contain both linear and circular segments
  • Modifications of oligonucleotides include, but are not limited to, modifications of the 3'OH or 5'OH group, modifications of the nucleotide base, modifications of the sugar component, and modifications of the phosphate group
  • the unmunomodulatory nucleic acid molecule can comprise ⁇ bonucleotides (containing ⁇ bose as the only or p ⁇ ncipal sugar component), deoxy ⁇ bonucleotides (containing deoxy ⁇ bose as the p ⁇ ncipal sugar component), or m accordance with the established state-of-the-art, modified sugars or sugar analogs may be mcorporated in the oligonucleotide of the present mvention
  • Examples of a sugar moiety that can be used m include, in addition to ⁇ bose and deoxy ⁇ bose, pentose, deoxypentose, hexose, deoxyhexose, glucose, arabinose, xylose, lyxose.
  • the sugar may be m pyranosyl or m a furanosyl form
  • the sugar moiety is preferably the furanoside of ⁇ bose, deoxy ⁇ bose, arabinose or 2'-0-methyl ⁇ bose, and the sugar may be attached to the respective heterocyclic bases either in I or J anome ⁇ c configuration
  • An unmunomodulatory nucleic acid molecule may comp ⁇ se at least one nucleoside comp ⁇ sing an L-sugar
  • the L-sugar may be deoxy ⁇ bose, nbose, pentose, deoxypentose, hexose, deoxyhexose, glucose, galactose, arabinose, xylose, lyxose, or a sugar "analog" cyclopentyl group
  • the L-sugar may be m pyranosyl or furanosyl form
  • the phosphorous de ⁇ vative (or modified phosphate group) that can be attached to the sugar or sugar analog moiety in the modified oligonucleotides of the present mvention can be a monophosphate, diphosphate, t ⁇ phosphate, alkylphosphate, alkanephosphate, phosphoronthioate, phosphorodithioate or the like
  • the heterocyclic bases, or nucleic acid bases that are mcorporated m the oligonucleotide base of the ISS can be the naturally occurring p ⁇ ncipal pu ⁇ ne and py ⁇ midme bases, (namely uracil or thymine, cytosine, adenine and guanine, as mentioned above), as well as naturally occurring and synthetic modifications of said p ⁇ ncipal bases Those skilled in the art will recognize that a large number of "synthetic" non-natural nucleosides comp ⁇ smg va ⁇ ous heterocyclic bases and va ⁇ ous sugar moieties (and sugar analogs
  • the root oligonucleotide of the immunomodulatory nucleic acid molecule is a non- coding sequence that can include at least one unmethylated CpG motif.
  • the relative position of any CpG sequence in ISS with immunomodulatory activity in certain mammahan species is 5'-CG-3 * (i.e., the C is in the 5' position with respect to the G in the 3' position).
  • Immunomodulatory nucleic acid molecules generally do not provide for, nor is there any requirement that they provide for, expression of any amino acid sequence encoded by the polynucleotide, and thus the sequence of a immunomodulatory nucleic acid molecule may be, and generally is, non-coding.
  • Immunomodulatory nucleic acid molecules may comprise a linear double or single-stranded molecule, a circular molecule, or can comprise both linear and circular segments.
  • Immunomodulatory nucleic acid molecules may be single-stranded, or may be completely or partially double-stranded.
  • an immimomodulatory nucleic acid molecule is an oligonucleotide, e.g., consists of a sequence of from about 6 to about 200, from about 10 to about 100, from about 12 to about 50, or from about 15 to about 25, nucleotides in length.
  • Exemplary consensus CpG motifs of immunomodulatory nucleic acid molecules useful in the invention include, but are not necessarily limited to:
  • the immunomodulatory nucleic acid molecule comprises a CpG motif flanked by at least two purine nucleotides (e.g., GG,
  • Exemplary DNA-based immunomodulatory nucleic acid molecules useful in the invention include, but are not necessarily limited to, polynucleotides comprising the following nucleotide sequences: AACGCC, AACGCT, AACGTC, AACGTT; AGCGCC, AGCGCT, AGCGTC, AGCGTT; GACGCC, GACGCT, GACGTC, GACGTT; GGCGCC, GGCGCT, GGCGTC, GGCGTT; ATCGCC, ATCGCT, ATCGTC, ATCGTT; GTCGCC, GTCGCT, GTCGTC, GTCGTT; and TCGTCG, and TCGTCGTCG.
  • Octameric sequences are generally the above-mentioned hexameric sequences, with an additional 3' CG.
  • Exemplary DNA-based immunomodulatory nucleic acid molecules useful in the invention include, but are not necessarily limited to, polynucleotides comprising the following octameric nucleotide sequences:
  • Immunomodulatory nucleic acid molecules useful in the invention can comprise one or more of any of the above CpG motifs.
  • immunomodulatory nucleic acid molecules useful in the invention can comprise a single instance or multiple instances (e.g., 2, 3, 5 or more) of the same CpG motif.
  • the immunomodulatory nucleic acid molecules can comprises multiple CpG motifs (e.g., 2, 3, 5 or more) where at least two of the multiple CpG motifs have different consensus sequences, or where all CpG motifs in the immunomodulatory nucleic acid molecules have different consensus sequences.
  • a non-limiting example of an immunomodulatory nucleic acid molecule has the sequence 5'- TGACTGTGAACGTTCGAGATGA-3' (SEQ ID NO: 1).
  • An example of a control nucleic acid molecule is one having the sequence 5'-TGACTGTGAAgGTTCGAGATGA-3' (SEQ ID NO:2), which differs from SEQ ID NO: 1 at the nucleotide indicated in lower case type.
  • Immunomodulatory nucleic acid molecules useful in the invention may or may not include palindromic regions. If present, a palindrome may extend only to a CpG motif, if present, in the core hexamer or octamer sequence, or may encompass more of the hexamer or octamer sequence as well as flanking nucleotide sequences.
  • the core hexamer structure of the foregoing immunomodulatory nucleic acid molecules can be flanked upstream and/or downstream by any number or composition of nucleotides or nucleosides.
  • ISS are at least 6 bases in length, and preferably are between 6 and 200 bases in length, to enhance uptake of the immunomodulatory nucleic acid molecule into target tissues.
  • immunomodulatory nucleic acid molecules useful in the invention include those that have hexameric nucleotide sequences having "CpG" motifs.
  • DNA sequences are generally preferred, RNA immunomodulatory nucleic acid molecules can be used, with inosine and/or uracil substitutions for nucleotides in the hexamer sequences. Modifications
  • Immunomodulatory nucleic acid molecules can be modified in a va ⁇ ety of ways
  • the immunomodulatory nucleic acid molecules can comp ⁇ se backbone phosphate group modifications (e g , methylphosphonate, phosphorothioate, phosphoroaimdate and phosphorodithioate lnternucleotide linkages), which modifications can, for example, enhance stability of the immunomodulatory nucleic acid molecule in vivo, making them particularly useful m therapeutic applications
  • a particularly useful phosphate group modification is the conversion to the phosphorothioate or phosphorodithioate forms of an unmunomodulatory nucleic acid molecule
  • Phosphorothioates and phosphorodithioates are more resistant to degradation in vivo than their unmodified oligonucleotide counterparts, increasing the half-lives of the immunomodulatory nucleic acid molecules and making them more available to the subject being treated
  • modified immunomodulatory nucleic acid molecules encompassed by the present mvention include immunomodulatory nucleic acid molecules having modifications at the 5' end, the 3' end, or both the 5 ' and 3 ' ends
  • the 5 ' and/or 3 ' end can be covalently or non-covalentiy conjugated to a molecule (either nucleic acid, non-nucleic acid, or both) to, for example, mcrease the bio-availabihty of the immunomodulatory nucleic acid molecules, mcrease the efficiency of uptake where desirable, facilitate delivery to cells of mterest, and the like
  • Exemplary molecules for conjugation to the immunomodulatory nucleic acid molecules mclude, but are not necessa ⁇ ly limited to, cholesterol, phosphohpids, fatty acids, sterols, ohgosaccha ⁇ des, polypeptides (e g , lmmunoglobuhns), peptides, antigens (e g , peptide
  • An immunomodulatory nucleic acid molecule may be provided in an admixture (l e , m solution) with antigen
  • An immunomodulatory nucleic acid molecule may be provided m a configuration such that it is proximately associated with antigen
  • proximate association is achieved when an unmunomodulatory nucleic acid molecule is conjugated, covalently or non-covalently, to an antigen, e g , one or more allergens
  • proximate association is achieved by means other than conjugation
  • an unmunomodulatory nucleic acid molecule is m admixture with one or more antigens, e g , one or more allergens, or an allergen extract
  • an unmunomodulatory nucleic acid molecule is in admixture with an antigen
  • the immunomodulatory nucleic acid molecule and the antigen are present m solution at concentrations effective to reduce an anaphylactic reaction in an antigen-specific manner Spatial proximation
  • Spatial proximation can be accomplished in a number of ways, mcludmg, covalent or non-covalent association, linkage, or attachment, and can be by con j ugation as well as means other than conjugation
  • an immunomodulatory nucleic acid molecule and an antigen are proximately associated at a distance sufficient or effective to reduce an anaphylactic reaction compared to administration of the unmunomodulatory nucleic acid molecule and the antigen m admixture
  • the unmunomodulatory nucleic acid molecule and the antigen are proximately associated at a distance of from about 0 1 angstroms to about 100 ⁇ m, from about 1 angstroms to about 10 ⁇ m, from about 10 angstroms to about 1 ⁇ m, from about 100 angstroms to about 100 nm, or from about 1 nm to about 10 nm.
  • an immunomodulatory nucleic acid molecule is conjugated, covalently or non-covalently, to an antigen
  • immunomodulatory nucleic acid molecule mcludes conjugates compnsing an unmunomodulatory nucleic acid molecule
  • Conjugates of nucleic acids an non-nucleic acid molecules, and methods for making same, are known m the art and desc ⁇ bed m, for example, WO 98/16427, WO 98/55495, WO 00/21556, each of which is mcorporated by reference for their teachings relatmg to conjugates
  • Further teachings relating to nucleic acid conjugates may be found in S L Beaucage, ed (1999) Current Protocols in Nucleic Acid Chemistry, John Wiley & Sons, and Kisakurek et al , eds (2000) Frontiers m Nucleic Acid
  • the peptide portion of the conjugate can be attached to the unmunomodulatory nucleic acid molecule through an amine, thiol, or carboxyl group in the peptide
  • a suitable reactive group e g , an N-hydroxysuccinirmde ester
  • an immunomodulatory nucleic acid molecule can be reacted directly with an epsilon ammo group of a lysme residue
  • the peptide portion of the conjugate can be attached to the 3' end of the unmunomodulatory nucleic acid molecule through solid support chemistry
  • the immunomodulatory nucleic acid molecule portion can be added to a polypeptide portion that has been pre-synthesized on a solid support (see, e g , Haralambidis et al (1990) Nucl Acid Res 18 493-499, Haralambidis et al (1990) Nucl Acid Res 18 501-505)
  • the peptide portion of a conjugate can be attached to the 5- end of an immunomodulatory nucleic acid molecule through an amine, thiol, or carboxyl group that has been incorporated into the immunomodulatory nucleic acid molecule during its synthesis (see, e.g., Agrawal et al. (1986) Nucleic Acids Res. 14:6227-6245; Bischoff et al. (1987) Anal. Biochem. 164:336-344; and U.S. Patent Nos. 4,849,513; 5,015,733; 5,118,800; and 5,118,802).
  • the linkage of an immunomodulatory nucleic acid molecule to a lipid can be formed using standard known methods. These methods include, but are not limited to, the synthesis of oligonucleotide-phospholipid conjugates, oligonucleotide-fatty acid conjugates, and oligonucleotide- sterol conjugates (see, e.g., Yanagawa et al. (1988) Nucleic Acids Symp. Ser. 19:189-192; Grabarek et al. (1990) Anal. Biochem. 185:131-135; and Boujrad et al. (1993) Proc. Natl. Acad. Sci. USA 90:5728-5731).
  • Linkage of an immunomodulatory nucleic acid molecule to an oligosaccharide or polysaccharide can be performed using standard known methods, including, but not limited to, the method described in O'Shannessy et al. (1985) J. Applied. Biochem. 7:347-355.
  • An immunomodulatory nucleic acid molecule-antigen conjugate can be formed through covalent bonds, as described above.
  • An immunomodulatory nucleic acid molecule-antigen conjugate can also be formed through non-covalent interactions, such as ionic bonds, hydrophobic interactions, hydrogen bonds, and/or van der Waals attractions.
  • the polypeptide may be proximately associated directly or indirectly to an immunomodulatory nucleic acid molecule, e.g., conjugated to the immunomodulatory nucleic acid molecule via a linker molecule.
  • an immunomodulatory nucleic acid molecule e.g., conjugated to the immunomodulatory nucleic acid molecule via a linker molecule.
  • linker molecules A wide variety of linker molecules are known in the art and can be used in the conjugates.
  • the linkage from the peptide to the oligonucleotide may be through a peptide reactive side chain, or the N- or C-terminus of the peptide. Linkage from the oligonucleotide to the peptide may be at either the 3' or 5' terminus, or internal.
  • a linker may be an organic, inorganic, or semi-organic molecule, and may be a polymer of an organic molecule, an inorganic molecule, or a co-polymer comprising both inorganic and organic molecules.
  • a linker may also be a bead derivatized to contain appropriate groups for attachment of an immunomodulatory nucleic acid molecule and an antigen.
  • beads including biodegradable beads, as well as methods of linking molecules to beads, are well known to those skilled in the art.
  • the linker molecules are generally of sufficient length to permit oligonucleotides and/or polynucleotides and a linked polypeptide to allow some flexible movement between the oligonucleotide and the polypeptide.
  • the linker molecules are generally about 6-50 atoms long.
  • the linker molecules may also be, for example, aryl acetylene, ethylene glycol oligomers containing 2-10 monomer units, diamines, diacids, amino acids, or combinations thereof.
  • Other linker molecules which can bind to oligonucleotides may be used in light of this disclosure. Spatial proximation by means other than conjugation In other embodiments, proximate association is achieved by means other than conjugation.
  • An immumodulatory nucleic acid molecule can be proximately associated with one or more antigens in a number of ways.
  • an immumodulatory nucleic acid molecule and an antigen are proximately associated by encapsulation.
  • an immumodulatory nucleic acid molecule and an antigen are proximately associated by linkage to a platform molecule.
  • a "platform molecule” is a molecule containing sites which allow for attachment of an immumodulatory nucleic acid molecule and one or more antigens.
  • an immumodulatory nucleic acid molecule and an antigen are proximately associated by adsorption onto a surface, such as a carrier particle.
  • the platform may be proteinaceous or non-proteinaceous.
  • a platform is generally multivalent (i.e., contains more than one binding, or linking, site) to accommodate binding to both an immumodulatory nucleic acid molecule and an antigen.
  • proteinaceous platforms include, but are not limited to, albumin, gammaglobulin, immunoglobulin, and ovalbumin. Borel et al. (1990) Immunol. Methods 126:159-168; Dumas et al. (1995) Arch. Dermatol. Res.
  • polymeric platforms are dextran, polyacrylamide, ficoll, carboxymethylcellulose, polyvinyl alcohol, polyvinylpyrrolidone, and poly D-glutamic acid/D- lysine.
  • platforms suitable for use within the present invention are chemically- defined, non-polymeric valency platforms such as those disclosed in U.S. Patent No. 5,552,391.
  • Suitable platforms are derivatized 2,2 t -ethylenedioxydiethylamine (EDDA); triethylene glycol (TEG); tetraaminobenzene; heptaaminobetacyclodextrin; tatraaminopentaeiythritol; 1,4,8, 11-tetraazacyclotetradecane; and 1,4,7, 10-tetraazacyclododecane.
  • EDDA 2,2 t -ethylenedioxydiethylamine
  • TAG triethylene glycol
  • tetraaminobenzene heptaaminobetacyclodextrin
  • tatraaminopentaeiythritol 1,4,8, 11-tetraazacyclotetradecane
  • 1,4,7, 10-tetraazacyclododecane 1,4,7, 10-tetraazacyclododecane.
  • Conjugation of an immumodulatory nucleic acid molecule and an antigen to a platform may be effected in any of a number of ways, generally involving one or more crosslinking agents and functional groups on the antigen, the immumodulatory nucleic acid molecule, and the platform molecule Linking groups are added to platforms usmg standard synthetic chemistry techniques
  • a platform contains, or is de ⁇ vatized to contain, approp ⁇ ate binding sites for immumodulatory nucleic acid molecules and antigen molecules
  • the immumodulatory nucleic acid molecule and/or the antigen is de ⁇ vatized to provide approp ⁇ ate linkage groups
  • smtable encapsulatmg agents mclude, but are not limited to, oil-in-water emulsions, nucrospheres, beads, macromoleculare complexes, nanocapsules, micelles, mixed micelles, microparticles, and hposomes
  • the encapsulation composition may further comp ⁇ se any of a wide va ⁇ ety of components, mcludmg, but not limited to, alum, hpids, surfactants, targeting moieties, phosphohpids, hpid membrane structures, polyethylene glycol, and other polymers, such as polypeptides, glycopeptides.
  • Encapsulatmg agents as well as methods of making same, have been amply desc ⁇ bed in the literature, and need not be elaborated upon herem
  • WO 00/21556 which provides a discussion of va ⁇ ous encapsulating agents, is mcorporated by reference herem for its teachings relatmg to encapsulatmg agents and methods of encapsulating a nucleic acid molecule and an antigen
  • the surface may be m the form of a earner particle made with either an morgamc or orgamc core Smtable earner particles mclude, but are not limited to, nanocrystalline particles, activated carbon particles, and protein-ceramic nanoplates
  • the adsorbent surface may be biodegradable Adsorption of an immumodulatory nucleic acid molecule and/or an antigen to a surface may occur through non-covalent interactions
  • the methods of the mvention are immunomodulatory nucleic acid molecules m admixture, or in spatial proximation, with an antigen, which may be an allergen
  • an antigen which may be an allergen
  • Antigens encompass a broad class of compounds, mcludmg. but not limited to, polypeptides, polysaccha ⁇ des, glycoprotems, hpoproteins, and lipopolysacchandes
  • allergens are immunogenic compounds that cause Th2-type T cell responses and IgE B cell responses, mast cell and basophil degranulation. and release of histamine and other mediators m susceptible individuals.
  • allergen encompasses purified allergen, allergenic fragments of an allergen, extracts from a source of allergen, and the like. Allergens of interest include food allergens, chemical allergens (e.g., drugs, cosmetics, and the like), plant-derived allergens, and animal- derived allergens.
  • Allergens of interest according to the present invention include antigens found in foods such as fruits (e.g., melons, strawberries, pineapple and other tropical fruits), peanuts, peanut oil, other nuts, milk proteins, egg whites, shellfish, tomatoes, etc.; airborne antigens such as grass pollens, animal danders, house mite feces, etc.; drug antigens such as penicillins and related antibiotics, sulfa drugs, barbiturates, anticonvulsants, insulin preparations (particularly from animal sources of insulin), local anesthetics (e.g., Novocain), and iodine (found in many X-ray contrast dyes); insect venoms and agents responsible for allergic dermatitis caused by blood sucking arthropods such as Diptera, including mosquitos (Anopheles sp., Aedes sp., Culiseta sp., Culex sp.), flies (Phlebotomus sp., C
  • the specific allergen may be any type of chemical compound such as, for example, a polysaccharide, a fatty acid moiety, a protein, etc.
  • Antigen preparations may be prepared by any available technique including, for example, isolation from natural sources, in vivo or in vitro expression of recombinant DNA molecules (see, for example, Zeiler et al. (1997) J. Allergy Clin. Immunol. 100(6 Pt 1):721-727, chemical synthesis, or other technique known in the art.
  • a wide variety of allergen preparations are available in the art, and many allergens have been molecularly cloned.
  • cloned allergens include Dermatophagoides pteryonyssinus (Der PI); Lol pl-V from rye grass pollen; various insect venoms including venom from jumper ant Myrmecia pilosula, Apis mellifera bee venom phospholipase A2 (PLA.sub.2) and antigen 5S, phospholipases from the yellow jacket Vespula maculifrons and white faced hornet Dolichovespula maculata; a large number of pollen proteins including birch pollen, ragweed pollen, Parol (the major allergen of Parietaria oficinalis) and the cross-reactive allergen Parjl (from Parietaria judaica) and other atmospheric pollens including Olea europaea, Artemisia sp., gramineae, etc.
  • Dermatophagoides pteryonyssinus Lol pl-V from rye grass
  • Polypeptide antigens A polypeptide antigen may be conjugated directly or indirectly, e.g., via a linker molecule, to an immunomodulatory nucleic acid molecule.
  • linker molecules A wide variety of linker molecules are known in the art and can be used in the conjugates.
  • the linkage from the peptide to the oligonucleotide may be through a peptide reactive side chain, or the N- or C-terminus of the peptide. Linkage from the oligonucleotide to the peptide may be at either the 3 ' or 5' terminus, or internal.
  • a linker may be an organic, inorganic, or semi-organic molecule, and may be a polymer of an organic molecule, an inorganic molecule, or a co-polymer comprising both inorganic and organic molecules. If present, the linker molecules are generally of sufficient length to permit oligonucleotides and/or polynucleotides and a linked polypeptide to allow some flexible movement between the oligonucleotide and the polypeptide. The linker molecules are generally about 6-50 atoms long.
  • the linker molecules may also be, for example, aryl acetylene, ethylene glycol oligomers containing 2-10 monomer units, diamines, diacids, amino acids, or combinations thereof. Other linker molecules which can bind to oligonucleotides may be used in light of this disclosure.
  • Peptides may be synthesized chemically or enzymatically, may be produced recombinantly, may be isolated from a natural source, or a combination of the foregoing. Peptides may be isolated from natural sources using standard methods of protein purification known in the art, including, but not limited to, HPLC, exclusion chromatography, gel electrophoresis, affinity chromatography, or other purification technique. One may employ solid phase peptide synthesis techniques, where such techniques are known to those of skill in the art. See Jones, The Chemical Synthesis of Peptides (Clarendon Press, Oxford)(1994). Generally, in such methods a peptide is produced through the sequential additional of activated monomeric units to a solid phase bound growing peptide chain. Well-established recombinant DNA techniques can be employed for production of peptides. Preparation of immunomodulatory nucleic acid molecules
  • Immunomodulatory nucleic acid moleculse can be synthesized using techniques and nucleic acid synthesis equipment that are well known in the art. For reference in this regard, see, e.g., Ausubel, et al., Current Protocols in Molecular Biology, Chs. 2 and 4 (Wiley Interscience, 1989); Maniatis, et al., Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab. New York, 1982); U.S. Patent No. 4,458,066 and U.S. Patent No. 4,650,675. Because the immunomodulatory nucleic acid molecule is non-coding, there is no concern about maintaining an open reading frame during synthesis.
  • an immunomodulatory nucleic acid molecule can be isolated from microbial species using techniques well known in the art, such as nucleic acid hybridization. Whole are fragmented bacterial DNA can be used. Preferably, such isolated immunomodulatory nucleic acid molecules will be purified to a substantially pure state; i.e., to be free of endogenous contaminants, such as lipopolysaccharides. Formulations
  • immunomodulatory nucleic acid molecules are prepared in a pharmaceutically acceptable composition for delivery to a host.
  • Pharmaceutically acceptable carriers preferred for use with the immunomodulatory nucleic acid molecules in the subject methods may include sterile aqueous of non-aqueous solutions, suspensions, and emulsions.
  • non-aqueous solvents are propylene glycol, polyethylene glycol, vegetable oils such as olive oil, and injectable organic esters such as ethyl oleate.
  • Aqueous carriers include water, alcoholic/ aqueous solutions, emulsions or suspensions, and microparticles, including saline and buffered media.
  • Parenteral vehicles include sodium chlonde solution, Ringer's dextrose, dextrose and sodium chlo ⁇ de, lactated Ringer's or fixed oils
  • Intravenous vehicles mclude fluid and nut ⁇ ent replenishers, electrolyte replemshers (such as those based on Rmger's dextrose), and the like
  • a composition compnsmg a immunomodulatory nucleic acid molecule may also be lyophihzed usmg means well known m the art, for subsequent reconstitution and use accordmg to the mvention
  • formulations for hposomal delivery and formulations compnsmg microencapsulated immunomodulatory nucleic acid molecules
  • the pharmaceutical compositions can be prepared m va ⁇ ous forms, such as granules, tablets, pills, suppositones, capsules, suspensions, salves, lotions and the like
  • Pharmaceutical grade organic or morgamc earners and/or diluents smtable for oral and topical use can be used to make up compositions compnsmg the therapeutically active compounds
  • Diluents known to the art mclude aqueous media, vegetable and animal oils and fats Stabilizing agents, wetting and emulsifying agents, salts for varying the osmotic pressure or buffers for securing an adequate pH value, and skin penetration enhancers can be used as auxiliary agents
  • Preservatives and other additives may also be present such as, for example, antimicrobials, antioxidants, chelating agents, and inert gases and the like
  • Immunomodulatory nucleic acid molecules can be administered m the absence of agents or compounds that might facilitate uptake by target cells (e g , as a "naked" polynucleotide, e g , a polynucleotide that is not encapsulated by a viral particle) Immunomodulatory nucleic acid molecules can be admimstered with compounds that facilitate uptake of unmunomodulatory nucleic acid molecules by target cells (e g , by macrophages) or otherwise enhance transport of an unmunomodulatory nucleic acid molecule to a treatment site for action
  • Absorption promoters, detergents and chemical lr ⁇ tants e g , keratinolytic agents
  • target tissue e g , through the skm
  • targeting of hposomes can be classified based on anatomical and mechanistic factors
  • Anatomical classification is based on the level of selectivity, for example, organ-specific, cell- specific, and organelle-specific Mechanistic targeting can be distinguished based upon whether it is passive or active
  • Passive targeting utilizes the natural tendency of liposomes to distribute to cells of the reticulo-endothehal system (RES) m organs which contain sinusoidal capilla ⁇ es
  • Active targeting on the other hand, mvolves alteration of the hposome by couplmg the hposome to a specific hgand such as a monoclonal antibody, sugar, glycohpid, or protem, or by changing the composition or size of the hposome m order to achieve targeting to organs and cell types other than the naturally occurring sites of localization
  • the surface of the targeted delivery system may be modified m a va ⁇ ety of ways
  • hpid groups can be mcorporated mto the hpid bilayer of the hposome m order to maintain the targeting hgand m stable association with the hposomal bilayer
  • Vanous well known linking groups can be used for joining the hpid chains to the targeting hgand (see, e g , Yanagawa, et al , (1988) Nuc Acids Symp Ser , 19 189, Grabarek, et al , (1990) Anal
  • Targeted delivery of unmunomodulatory nucleic acid molecules can also be achieved by conjugation of the unmunomodulatory nucleic acid molecules to a the surface of viral and non-viral recombmant expression vectors, to an antigen or other hgand, to a monoclonal antibody or to any molecule which has the desired bmdmg specificity Routes of administration
  • Immunomodulatory nucleic acid molecules are administered to an individual usmg any available method and route suitable for drug delivery, mcludmg in v vo and ex vivo methods, as well as systemic, mucosal, and localized routes of administration
  • Immunomodulatory nucleic acid molecules can be administered to a host usmg any available conventional methods and routes suitable for delivery of conventional drugs, mcludmg systemic or localized routes
  • routes of administration contemplated by the mvention mclude, but are not necessa ⁇ ly limited to, enteral, parenteral, mucosal (e g , lntranasal), or inhalational routes
  • Inhalational routes may be prefe ⁇ ed m cases of pulmonary mvolvement, particularly m view of the activity of certain unmunomodulatory nucleic acid molecules m reducmg an anaphylactic response
  • Inhalational routes of administration e g , lntranasal, intrapulmonary, and the like
  • Parenteral routes of administration other than inhalation administration mclude, but are not necessa ⁇ ly limited to, topical, ophthalmic, transdermal, subcutaneous, intramuscular, intraorbital, intracapsular, intraspinal, intrastemal, lntranasal, intraocular, and mtravenous routes, I e , any route of administration other than through the alimentary canal
  • Parenteral administration can be earned to effect systemic or local delivery of immunomodulatory nucleic acid molecules
  • Immunomodulatory nucleic acid molecules can also be delivered to the subject by enteral administration Enteral routes of admmistration mclude, but are not necessa ⁇ ly limited to, oral and rectal (e g , usmg a suppository) delivery
  • Epidermal aclministration can be accomplished by mechanically or chemically lrntatmg the outermost layer of the epidermis sufficiently to provoke an immune response to the lr ⁇ tant
  • An exemplary device for use m epidermal administration employs a multiplicity of very narrow diameter, short tynes which can be used to scratch unmunomodulatory nucleic acid molecules coated onto the tynes mto the skm
  • the mvention also contemplates opthalmic administration of immunomodulatory nucleic acid molecules, which generally mvolves mvasive or topical application of a pharmaceutical preparation to the eye Eye drops, topical creams and lnjectable liquids are all examples of suitable formulations for delivering drugs to the eye
  • unmunomodulatory nucleic acid molecule and antigen are co- admimstered
  • the immunomodulatory nucleic acid molecule and the antigen may be administered substantially simultaneously, or the unmunomodulatory nucleic acid molecule may be admimstered before or after the antigen
  • the unmunomodulatory nucleic acid molecule and the antigen are generally admimstered within about 72 hours, about 48 hours, about 24 hours, about 12 hours, about 8 hours, about 4 hours, about 2 hours, about 1 hour, or about 30 minutes or less, of each other Antigen may be admimstered separately from the immunomodulatory nucleic acid molecule, m admixture with unmunomodulatory nucleic acid molecule, or proximately associated with (e g , conjugated or brought mto spatial proximation by other means, as descnbed m more detail below) to one or more unmunomodulatory nucleic acid molecules
  • a smtable dosage range is one that provides up to about 1 ⁇ g to about 1,000 ⁇ g or about 10,000 ⁇ g of immunomodulatory nucleic acid molecule can be administered in a single dosage.
  • a target dosage of immunomodulatory nucleic acid molecule can be considered to be about 1-10 ⁇ M in a sample of host blood drawn within the first 24-48 hours after administration of immunomodulatory nucleic acid molecules.
  • doses of allergen are those which are in practice for allergen-based immunotherapy. Based on current studies, immunomodulatory nucleic acid molecules are believed to have little or no toxicity at these dosage levels.
  • immunomodulatory nucleic acid molecules are generally dose-dependent. Therefore, to increase immunomodulatory nucleic acid molecules potency by a magnitude of two, each single dose is doubled in concentration. Increased dosages may be needed to achieve the desired therapeutic goal.
  • the invention thus contemplates administration of multiple doses to provide and maintain a reduction in a symptom associated with anaphylaxis.
  • immunomodulatory nucleic acid molecules may be administered at intervals ranging from at least every two weeks to every four weeks (e.g., monthly intervals) (e.g., every four weeks).
  • mice Female 6-8 wk C3H/HeJ mice were purchased from Jackson Laboratory (Bar Harbor, ME). All mice were maintained in the University of California, San Diego Animal Facility, which is certified by the American Association for the Accreditation of Laboratory Animal Care, and all experiments were approved by the animal care committee at our institution.
  • pACB-LacZ contains the CMV IE1 promoter-intron , the simian virus 40 t-intron, the E. coh LacZ cDNA, and the simian virus 40 polyadenylation site.
  • pACB is the same construct without the E. coli LacZ insert. Plasmids were purified using a megaprep kit (Qiagen, Chatsworth, CA), and endotoxin was removed by extraction with Triton X-l 14 (Sigma, St Louis, MO) to below the limits of detection (0.005 EU/ml) by limulus amoebocyte lysate assay (Bio-Whittaker, Walkersville, MD).
  • ⁇ - galactosidase ⁇ -gal
  • pertussis toxin ⁇ -gal
  • Phosphorothioate ISS-ODN and mutated oligodeoxynucleotide were purchased from Trilink Biotechnologies (San Diego, CA).
  • the ISS-ODN used in these studies has the sequence 5 '-TGACTGTGAACGTTCGAGATGA-3 ' (SEQ ID NO 1) and the mutated ohgodeoxynucleotide (M-ODN) has the sequence 5'- TGACTGTGAACCTTCCAGATGA-3' (SEQ ID NO 2) Endotoxin could not be detected m these ohgodeoxynucleotide preparations by lunulus amoebocyte lysate assay (Bio-Whittaker) Vaccination, sensitizatton, and anaphylactic challenge protocols The timetable for vaccination, sensitization, and anaphylactic challenge is shown m Figure 1 Mice received intradermal (i d ) injections with 50 ⁇ g of pACB-LacZ or pACB, or ⁇ -gal (lO ⁇ g) alone, or mixed with ISS-ODN (lO ⁇ g) or M-ODN (lO ⁇ g), m 50 ⁇ l normal s
  • Splenocyte cytokine profiles Antigen specific splenocyte cytokine profiles were assessed as previously desc ⁇ bed Sato et al (1996) Science 273 352-354 , Roman et al (1997) Nature Med 3 849-854, and Horner et al (1998) Cell Immunol 190 77-82 Bnefly, mouse spleens were harvested after l v challenge, teased to prepare smgle cell suspensions and resuspended m RPMI 1640 supplemented with 10"% heat-inactivated fetal calf serum, 2mM-glutam ⁇ ne, ⁇ 2-mercaptoethanol, and 1% penicillin- streptomyc (complete media) Splenocytes were mcubated at 5 X 10- * cells per well in 96 well plates m a final volume of 200 ⁇ l of complete media with ⁇ -gal added at lO ⁇ g/ml at 37°C/5% CO2 Culture supernatants were harvested at 72 hours and analyzed
  • mice surviving challenge demonstrated behavioral changes, such as decreased activity, and rapid and labored respirations, consistent with mild anaphylactic reactions within the first 30 minutes. However, by the end of the first hour mice surviving the anaphylactic challenge appeared normal.
  • Example 2 pDNA vaccination effectively inhibits the development of a Tin biased immune response after allergen sensitization
  • ⁇ -gal specific antibody and cytokine profiles of vaccinated/sensitized mice were further evaluated.
  • antigen specific IgE levels were on average 15 fold lower in pACB-LacZ versus pACB vaccinated mice (p ⁇ 0.0001).
  • mice demonstrated behavioral changes consistent with a mild anaphylactic reaction within the first 30 minutes, but all surviving mice appeared normal 1 hour after i.v. challenge.
  • post challenge histamine levels increased in all mice, but they were significantly lower in ⁇ -gal/ISS-ODN vaccinated mice (6.1 + 2.7 ⁇ M) then mice vaccinated with ⁇ -gal (25.2 ⁇ 1 l ⁇ M) or ISS-ODN (26 + 6 ⁇ M) alone, or mice vaccinated with ⁇ - gal and M-ODN (29 ⁇ 7.8 ⁇ M)(P ⁇ 0.05).
  • Example 4 Protein/ ISS-ODN vaccination effectively inhibits the development of a Th biased immune response after allergen sensitization
  • ⁇ -gal/ISS-ODN vaccinated mice had greater than 9 fold lower serum IgE levels then control immunized mice (p ⁇ 0.035).
  • IgG2a levels were 8-fold higher (p ⁇ 0.007).
  • ⁇ -gal ISS-ODN vaccinated mice also produced significantly more IFNy.(p ⁇ 0.03) and significantly less IL-4 (p ⁇ 0.04) and IL-5 (p ⁇ 0.002) than control mice (figure 5B).
  • Example 5 Protein ISS vaccination reduces histamine release in allergen-sensitized mice
  • C3H/HeJ mice received i.d. vaccinations with 50 ⁇ g of pACB-LacZ or pACB on 3 occasions 10 days apart.
  • mice were Th 2 sensitized with a mixture of ⁇ -gal (100 ⁇ g), pertussis toxin (300 ng), and alum (1 mg) injected i.p. on 2 occasions 7 days apart.
  • Mice then received an i.v. challenge with 150 ⁇ g of ⁇ -gal 3 weeks after their last i.p. sensitization.
  • Plasma histamine levels were determined 2 minutes after challenge, p values for survival were determined by Fisher's exact test, and p values for histamine release were determined by unpaired 2 tailed Student's t test. Mice that died did so within 1 hour of challenge. Surviving mice demonstrated signs of anaphylaxis within the first half hour after challenge but appeared healthy 1 hour later. The results are shown in Table 3.
  • mice protected 5/15 mice from death in 4 experiments, while 0/16 mice vaccinated with a LacZ deficient plasmid (pACB) survived challenge. Consistent with the outcomes of challenged mice, post challenge plasma histamine levels were also significantly lower in pACB-LacZ versus pACB vaccinated mice (Table 3). Anaphylactic hypersensitivity is associated with Th2 biased immunity, and in humans is dependent on IgE production. Therefore, ⁇ -gal specific antibody and cytokine profiles of gene vaccinated/sensitized mice were further evaluated. IgE levels were on average 15 -fold lower in pACB-LacZ versus pACB vaccinated mice.
  • mice produced approximately 3-fold less IgGland 4-fold more antigen specific IgG2a than pACB vaccinated mice.
  • Splenocytes from mice vaccinated with pACB-LacZ prior to sensitization further demonstrated a Thl bias with significantly higher antigen specific IFN ⁇ and lower IL-4 and IL-5 responses than control mice.
  • mice received i.d. vaccinations with ISS- ODN(10 ⁇ g) and ⁇ -gal (10 ⁇ g), ISS-ODN or ⁇ -gal alone or ⁇ -gal plus M-ODN (10 ⁇ g) on 3 occasions 10 days apart. Twenty five days after the last vaccination, mice were Th 2 sensitized with a mixture of ⁇ -gal (100 ⁇ g), pertussis toxin (300 ng), and alum (1 mg) injected i.p. on 2 occasions 7 days apart. Mice then received an i.v.
  • mice were vaccinated with ⁇ -gal and ISS-ODN, and then sensitized and i.v. challenged with the model allergen, in a manner analogous to that described for the gene vaccination studies.
  • mice survived i.v. ⁇ -gal challenge versus 0/36 control mice receiving ⁇ -gal or ISS-ODN, or ⁇ -gal and M-ODN.
  • Post challenge histamine levels were also significantly lower in ⁇ -gal/ISS-ODN vaccinated versus control mice.
  • those immunized with ⁇ -gal and ISS-ODN demonstrated a 90% decrease in serum IgE post sensitization when compared to controls.
  • ⁇ -gal/ISS-ODN vaccinated mice had similar IgGl levels to control mice, IgG2a levels were 8 -fold higher.
  • mice splenocytes from ⁇ -gal ISS-ODN vs. control vaccinated mice demonstrated an antigen specific Thl cytokine bias reflected in elevated IFN ⁇ and depressed IL-4 and IL-5 production upon culture with allergen.

Abstract

The invention provides a method for reducing anaphylactic hypersensitivity response to an allergen in a subject. In one embodiment, the method comprises administering an immunomodulatory nucleic acid molecule to the subject. In another embodiment, the method comprises administering antigen with the immunomodulatory nucleic acid molecule to the subject, which antigen may be administered as a conjugate with or in admixure with the immnomodulatory nucleic acid molecule.

Description

METHOD FOR PREVENTING AN ANAPHYLACTIC REACTION
GOVERNMENT RIGHTS
This invention was made with Government support under Grant Nos. AI40682 and AI01490, awarded by the National Institutes of Health. The government may have certain rights in this invention.
FIELD OF THE INVENTION
The invention is in the field of immune response modulation, and in particular to reducing an anaphylactic hypersensitivity response.
BACKGROUND OF THE INVENTION In humans, anaphylaxis is a life-threatening hypersensitivity response in which IgE/FcεRI mediated systemic mast cell degranulation occurs. However, only a small fraction of allergic individuals develop anaphylactic hypersensitivities. The true incidence of anaphylaxis and anaphylactic hypersensitivities is not known; however, one study proposes that 3.2 cases of anaphylaxis per 100,000 people occur each year, that 40% are misdiagnosed, and that 5% of cases are fatal. Sorenson et al. (1989) Allergy 44 :288-290. Of particular concern in the case of food allergies is that many anaphylactic reactions occur in individuals after the accidental injection of known allergens. Sampson et al. (1992) N. Engl. J. Med. 327:380-384.
Because of their lethal potential, effective therapies for the desensitization of individuals with anaphylactic hypersensitivities would be of great clinical utility. Unfortunately, except for stinging insects, traditional protein based immunotherapy (IT) has no established value in the desensitization of individuals at risk for anaphylaxis, and avoidance remains the only therapeutic option. Graft et al. (1993) Immunotherapy, p 934-944, in Bronchial Asthma Weiss and Stein, eds. 3rd ed. Little Brown & Co.; and Oppenheimer et al. (1992) J. Allergy Clin. Immunol. 90:256-262. In the case of protein immunotherapy, there is no single immunological parameter that reliably predicts successful anaphylactic desensitization in clinical practice. Ebner et al. (1999) Allergy Immunol. 119 :1-5 ; Gehlar et al. (1999) Clin. Exp. Allergy 29:497-506; and Golden et al. (1998) J. Allergy Clin. Immunol. 101-298-305. In the context of anaphylaxis, the antigen to which the individual is sensitive is considered an allergen. Anaphylactic hypersensitivity responses have even been demonstrated in individuals who have lost their skin test reactivity after receiving immunotherapy for five or more years. Golden et al. (1998) J. Allergy Clin. Immunol. 101-298-305. While DNA based immunization strategies have been shown to prevent the development of Th2 biased immune responses and to prevent late phase allergic reactions in mouse and rat models of asthma, it has proven more difficult to prevent the early phase of the immediate hypersensitivity response, which characterizes anaphylaxis. Hsu et al. (1996) Nature Meet. 2 :540-544 ; Slater et al. (1997) J. Allergy Clin. Immunol. 99:S504; Kohama et al. (1999) J Allergy Clin. Immunol. 104:1231-1238; and Kline et al. (1998) J. Immunol. 160:2555- 2559.
Traditional allergen immunotherapy has a limited role in allergen desensitization, mainly due to serious side effects. One of the side effects of this approach is an anaphylactic reaction that can lead to death. In the absence of any other effective therapeutic modality, allergen avoidance is generally the only safe option for preventing anaphylaxis. There remains a need for treatment strategies that prevent the anaphylactic hypersensitivity response. The present invention addresses this need.
SUMMARY OF THE INVENTION The invention provides methods for reducing the risk of an anaphylactic hypersensitivity response to an allergen in a subject. The invention further provides methods for reducing the severity of an anaphylactic hypersensitivity response to an antigen in a subject. In general, these methods comprise administering an immunomodulatory nucleic acid molecule to the subject. In some embodiments, the methods comprise co-administering antigen with the immunomodulatory nucleic acid molecule to the subject. In some of these embodiments, the antigen is administered in close spatial proximity to the immunomodulatory nucleic acid molecule. In particular embodiments, the antigen is an allergen, and the immunomodulatory nucleic acid molecule is administered as an allergen- immunomodulatory nucleic acid molecule conjugate. In other embodiments, the antigen is administered in admixture with the immunomodulatory nucleic acid molecule.
The invention provides an advantage over traditional, antigen-based desensitization therapies, in that untoward side effects, including death, associated with such therapies are avoided.
BRIEF DESCRIPTION OF THE FIGURES
Figure 1 is a timetable for vaccination, sensitization, and anaphylactic challenge.
Figure 2 is a graph depicting plasma histamine levels after anaphylactic challenge in pACB-LacZ vaccinated mice.
Figure 3 is a graph depicting serum antibody and cytokine responses of pACB-LacZ vaccinated mice.
Figure 4 is a graph depicting plasma histamine levels after anaphylactic challenge in βGal/ISS-ODN vaccinated mice.
Figure 5 is a graph depicting serum antibody and cytokine responses of β-Gal/ISS-ODN vaccinated mice. DETAILED DESCRIPTION OF THE INVENTION The present invention is based on the discovery that administration of immunomodulatory nucleic acid molecule to a subject reduces the risk of death due to anaphylactic hypersensitivity response. Anaphylactic allergens are those antigens that pose a risk of anaphylactic reaction in hypersensitive individuals.
Anaphylaxis is an acute, systemic allergic reaction that occurs after an individual has become sensitized to an antigen. Anaphylaxis is associated with the production of high levels of IgE antibodies and with the release of histamines, which cause muscle contractions, constriction of the airways, and dilation of blood vessels. Symptoms of anaphylactic reactions include hives, generalized itching, nasal congestion, wheezing, difficulty breathing, cough, cyanosis, lightheadedness, dizziness, confusion, slurred speech, rapid pulse, palpitations, nausea and vomiting, abdominal pain or cramping, skin redness or inflammation, nasal flaring, intercostals retractions, etc.
The invention provides a safer, and more potent therapeutic advantage, avoiding the disadvantages of traditional, antigen-based immunotherapy. Before the present invention is described, it is to be understood that this invention is not limited to particular embodiments described, as such may, of course, vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments only, and is not intended to be limiting, since the scope of the present invention will be limited only by the appended claims. All scientific and technical terms used in this application have meanings commonly used in the art unless otherwise specified. As used in this application, the following words or phrases have the meanings specified.
It must be noted that as used herein and in the appended claims, the singular forms "a", "and", and "the" include plural referents unless the context clearly dictates otherwise. Thus, for example, reference to "an immunomodulatory nucleic acid molecule " includes a plurality of such molecules and reference to "the antigens" includes reference to one or more antigens and equivalents thereof known to those skilled in the art, and so forth.
Throughout this application various publications are referenced. The disclosures of these publications in their entireties are hereby incorporated by reference into this apphcation in order to describe more fully the state of the art to which this invention pertains. Definitions
As used herein, the terms "immunomodulatory nucleic acid molecule" refers to a polynucleotide that comprises at least one immunomodulatory nucleic acid moiety. Such immunomodulatory nucleic acid molecules are sometimes referred to in the art as "immunostimulatory sequences" or "ISS" or "ISS-ODN" because of previously described effects on an immune response. The term "immunomodulatory," as used herein in reference to a nucleic acid molecule, refers to the ability of a nucleic acid molecule to modulate an immune response in a vertebrate host. As used herein, "anaphylactic hypersensitivity response" refers to an immediate hypersensitivity reaction. Anaphylaxis can elicit systemic effects, or local (e.g., organ-specific) effects, which result in a change in vital signs. Anaphylactic hypersensitivity can lead to anaphylactic reaction or to anaphylactic shock.
The terms "oligonucleotide," "polynucleotide," and "nucleic acid molecule", used interchangeably herein, refer to a polymeric forms of nucleotides of any length, either ribonucleotides or deoxyribonucleotides. Thus, this term includes, but is not limited to, single-, double-, or multi- stranded DNA or RNA, genomic DNA, cDNA, DNA-RNA hybrids, or a polymer comprising purine and pyrimidine bases or other natural, chemically or biochemically modified, non-natural, or derivatized nucleotide bases. The backbone of the polynucleotide can comprise sugars and phosphate groups (as may typically be found in RNA or DNA), or modified or substituted sugar or phosphate groups. Alternatively, the backbone of the polynucleotide can comprise a polymer of synthetic subunits such as phosphoramidites, and/or phosphorothioates, and thus can be an oligodeoxynucleoside phosphoramidate or a mixed phosphoramidate-phosphodiester oligomer. Peyrottes et al. (1996) Nucl. Acids Res. 24: 1841-1848; Chaturvedi et al. (1996) Nucl. Acids Res. 24:2318-2323. The polynucleotide may comprise one or more L-nucleosides. A polynucleotide may comprise modified nucleotides, such as methylated nucleotides and nucleotide analogs, uracyl, other sugars, and linking groups such as fluororibose and thioate, and nucleotide branches. The sequence of nucleotides may be interrupted by non-nucleotide components. A polynucleotide may be further modified after polymerization, such as by conjugation with a labeling component. Other types of modifications included in this definition are caps, substitution of one or more of the naturally occurring nucleotides with an analog, and introduction of means for attaching the polynucleotide to proteins, metal ions, labeling components, other polynucleotides, or a solid support. Immimomodulatory nucleic acid molecules can be provided in various formulations, e.g., in association with liposomes, microencapsulated, etc., as described in more detail herein.
The terms "polypeptide," "peptide," and "protein", used interchangeably herein, refer to a polymeric form of amino acids of any length, which can include coded and non-coded amino acids, chemically or biochemically modified or derivatized amino acids, and polypeptides having modified peptide backbones. The term includes polypeptide chains modified or derivatized in any manner, including, but not limited to, glycosylation, formylation, cyclization, acetylation, phosphorylation, and the like. The term includes naturally-occurring peptides, synthetic peptides, and peptides comprising one or more amino acid analogs. The term includes fusion proteins, including, but not limited to, fusion proteins with a heterologous amino acid sequence, fusions with heterologous and homologous leader sequences, with or without N-terminal methionine residues; immunologically tagged proteins; and the like.
The terms "antigen" and "epitope" are well understood in the art and refer to the portion of a macromolecule which is specifically recognized by a component of the immune system, e.g., an antibody or a T-cell antigen receptor. As used herein, the term "antigen" encompasses antigenic epitopes, e.g., fragments of an antigen which are antigenic epitopes. Epitopes are recognized by antibodies in solution, e.g. free from other molecules. Epitopes are recognized by T-cell antigen receptor when the epitope is associated with a class I or class II major histocompatibility complex molecule. The term "antigen" includes allergenic antigens, or allergens. The term further includes allergens that have been modified, and extracts of allergens, e.g., crude extracts, which may comprise more than one allergen.
The terms "conjugated," "attached," and "linked" (and similar terms, e.g. "conjugation," "attachment," and "linkage") are used interchangeably herein to refer to a chemical association of two molecules, e.g., a nucleic acid molecule and a polypeptide. The chemical association may be covalent or non-covalent. The two molecules can be linked directly, or indirectly, e.g., via a linker ("spacer") molecule, a solid support, and the like.
As used herein, the terms "treatment", "treating", and the like, refer to obtaining a desired pharmacologic and/or physiologic effect. The effect may be prophylactic in terms of completely or partially preventing (e.g., reducing the incidence of; reducing the risk of) a disease or symptom thereof and/or may be therapeutic in terms of a partial or complete cure for a disease and/or adverse affect attributable to the disease and/or may be prophylactic in terms of completely or partially preventing (e.g., reducing the incidence of, reducing the risk of) a recurrence of the disease or symptom thereof. "Treatment", as used herein, covers any treatment of a disease in a mammal, particularly in a human, and includes: (a) preventing the disease from occurring in a subject which may be predisposed to the disease but has not yet been diagnosed as having it; (b) inhibiting the disease, i.e., arresting its development; (c) preventing recurrence of the disease in a subject which is predisposed to such a recurrence; and (d) relieving, or reducing the severity of, a symptom of the disease. Anaphylaxis is a life-threatening condition; therefore, "treatment," as used herein in the context of anaphylaxis, includes reducing the risk of death. In the context of an anaphylactic reaction, "treatment" refers to reducing the incidence of an anaphylactic reaction; reducing the risk that an anaphylactic reaction will occur in a susceptible individual; reducing an anaphylaxis-associated symptom or parameter; reducing the severity of an anaphylaxis-associated symptom or parameter; and reducing the severity of an anaphylactic reaction. As used herein, "subject" or "individual" or "patient" refers to the recipient of the therapy to be practiced according to the invention. The subject is generally a mammal. If a mammal, the subject may be a human, but may also be a domestic livestock, laboratory subject or pet animal.
As used herein, "exposure" to a substance includes both natural, environmental exposure to the antigen as well as administration of the substance to a subject, and as such encompasses both accidental and deliberate exposure to the antigen. THERAPEUTIC METHODS OF THE INVENTION
The present invention provides methods of reducing an anaphylactic reaction in an individual, methods of reducing a symptom of anaphylaxis, methods of reducing the risk of an anaphylactic response in an individual, and methods of reducing the incidence of anaphylaxis. The methods generally comprise administering an effective amount of an immunomodulatory nucleic acid molecule to an individual. The methods are useful to treat an anaphylactic response. Accordingly, the invention further provides methods of treating anaphylaxis in an individual.
The immunomodulatory nucleic acid molecule may be administered alone (e.g., without co- administration of antigen), in admixture with, or in spatial proximation with an antigen.
In some embodiments, the reduction in an anaphylactic response is antigen specific. The term "antigen-specific" is one well understood in the art, and as used herein refers to a reduction in an anaphylactic response to the antigen with which the individual is sensitized, or to closely related ("cross-reactive") antigens, e.g., antigens that share one or more epitopes with the sensitizing antigen. Therapeutic methods of the invention reduce an anaphylaxis-associated parameter or symptom in an individual. As used herein, the term "an anaphylaxis-associated parameter or symptom" is a parameter or symptom associated with, or caused by, an anaphylactic reaction. Anaphylaxis-related symptoms and parameters include, but are not limited to, elevated levels of IgE antibodies, e.g., in the serum or other body fluid; release of hista ines and other mediators produced by mast cells and or basophils, including, but not limited to, leukotrienes (e.g., leukotriene A4), prostaglandins (e.g., prostaglandin D2), serotonin, eosinophil chemotactic factor, neutrophil chemotactic factor, proteases, platelet-activating factor, bradykinin, and cytokines (e.g., IL-1, TNF-α, IL-2, IL-3, IL-4, IL-5, IL-6, TGF-β, and GM-CSF); elevated serum levels of histamines; constriction of the airways; hives; generalized itching; nasal congestion; wheezing; difficult breathing; cough; cyanosis; lightheadedness; dizziness; confusion; slurred speech; rapid pulse; palpitations; nausea and vomiting; drop in blood pressure; edema; abdominal pain or cramping; skin redness or inflammation; nasal flaring; intercostals retraction; anaphylactic shock; and death.
An "effective amount" of an immunomodulatory nucleic acid molecule is one that reduces one or more anaphylaxis-associated symptom or parameter in an individual by at least about 10%, at least about 20%, at least about 30%, at least about 40%, at least about 50%, at least about 60%, at least about 70%, at least about 80%, or at least about 90% or more, when compared with the symptom or parameter in the individual not treated with the immunomodulatory nucleic acid molecule, or when compared with a control individual not treated with the immunomodulatory nucleic acid molecule, e.g., a control individual exposed to an antigen but not treated with immimomodulatory nucleic acid molecule.
Whether a symptom or parameter associated with anaphylaxis has been reduced can be determined using any known assay or diagnostic method. Methods of measuring levels of histamine and other mediators produced by mast cells or basophils are well known in the art and can be used. In many instances, immunological assays are used, e.g., enzyme-linked immunosorbent assays, using antibody specific for a given mediator. Many such assays are commercially available. Methods of measuring histamine levels are described in the Examples. Subjects suitable for treatment with the methods of the invention
Subjects particularly suitable for treatment with any of the subject methods include individuals known to be susceptible to having an anaphylactic reaction to a substance; and individuals suspected of being susceptible to having an anaphylactic reaction to a substance, when compared with a normal individual. For example, any patient with atopy, i.e., an individual who has had an allergic reaction, of any severity, to an antigen may be considered at risk of having an anaphylactic reaction to that antigen, and possibly to other antigens. As used herein, a "normal individual" is one who is not susceptible to having an anaphylactic reaction, i.e., under normal physiological conditions and under normal conditions of exposure to an allergen, a normal individual will not have an anaphylactic reaction or display symptoms of anaphylaxis. Nucleic acid molecules comprising immunomodulatory nucleic acid molecule
Nucleic acid molecules comprising an immunomodulatory nucleic acid molecule which are suitable for use in the methods of the invention include an oligonucleotide, which can be a part of a larger nucleotide construct such as a plasmid. The term "polynucleotide" therefore includes oligonucleotides, modified oligonucleotides and oligonucleosides, alone or as part of a larger construct. The polynucleotide can be single-stranded DNA (ssDNA), double-stranded DNA (dsDNA), single- stranded RNA (ssRNA) or double-stranded RNA (dsRNA).
As used herein the term "immunomodulatory nucleic acid molecule" encompasses an immunomodulatory nucleic acid molecule not conjugated with another moiety (e.g., an allergenic antigen); an immunomodulatory nucleic acid molecule in spatial proximation with an antigen; an immunomodulatory nucleic acid molecule conjugated with another moiety; an immunomodulatory nucleic acid molecule linked with another moiety; and an immunomodulatory nucleic acid molecule in admixture with one or more antigens. An immunomodulatory nucleic acid molecule may be administered alone or as part of a larger nucleic acid construct, as part of a conjugate with an antigen, or otherwise in proximate association with an antigen Thus, the term "immunomodulatory nucleic acid molecule," as used herein, encompasses an immunomodulatory nucleic acid molecule m proximate association with an antigen
The polynucleotide portion can be linearly or circularly configured, or the oligonucleotide portion can contain both linear and circular segments Modifications of oligonucleotides include, but are not limited to, modifications of the 3'OH or 5'OH group, modifications of the nucleotide base, modifications of the sugar component, and modifications of the phosphate group
The unmunomodulatory nucleic acid molecule can comprise πbonucleotides (containing πbose as the only or pπncipal sugar component), deoxyπbonucleotides (containing deoxyπbose as the pπncipal sugar component), or m accordance with the established state-of-the-art, modified sugars or sugar analogs may be mcorporated in the oligonucleotide of the present mvention Examples of a sugar moiety that can be used mclude, in addition to πbose and deoxyπbose, pentose, deoxypentose, hexose, deoxyhexose, glucose, arabinose, xylose, lyxose. and a sugar "analog" cyclopentyl group The sugar may be m pyranosyl or m a furanosyl form In the modified oligonucleotides of the present mvention, the sugar moiety is preferably the furanoside of πbose, deoxyπbose, arabinose or 2'-0-methylπbose, and the sugar may be attached to the respective heterocyclic bases either in I or J anomeπc configuration
An unmunomodulatory nucleic acid molecule may compπse at least one nucleoside compπsing an L-sugar The L-sugar may be deoxyπbose, nbose, pentose, deoxypentose, hexose, deoxyhexose, glucose, galactose, arabinose, xylose, lyxose, or a sugar "analog" cyclopentyl group The L-sugar may be m pyranosyl or furanosyl form
The phosphorous deπvative (or modified phosphate group) that can be attached to the sugar or sugar analog moiety in the modified oligonucleotides of the present mvention can be a monophosphate, diphosphate, tπphosphate, alkylphosphate, alkanephosphate, phosphoronthioate, phosphorodithioate or the like The heterocyclic bases, or nucleic acid bases that are mcorporated m the oligonucleotide base of the ISS can be the naturally occurring pπncipal puπne and pyπmidme bases, (namely uracil or thymine, cytosine, adenine and guanine, as mentioned above), as well as naturally occurring and synthetic modifications of said pπncipal bases Those skilled in the art will recognize that a large number of "synthetic" non-natural nucleosides compπsmg vaπous heterocyclic bases and vaπous sugar moieties (and sugar analogs) are available, and that the immunomodulatory nucleic acid molecule can mclude one or several heterocyclic bases other than the pπncipal five base components of naturally occurring nucleic acids Preferably, however, the heterocyclic base in the ISS is selected from uracιl-5-yl, cytosιn-5-yl, ademn-7-yl, ademn-8-yl, guanm-7-yl, guanιn-8-yl, 4-aιmnopyrrolo [2,3- d] pyπmιdιn-5-yl, 2-ammo-4-oxopyrolo [2,3-d] pyπmιdιn-5-yl, 2-ammo-4-oxopyrrolo [2,3-d] pyπmιdιn-3-yl groups, where the purmes are attached to the sugar moiety of the oligonucleotides via the 9-position, the pyrimidines via the 1 -position, the p*yιτolopyrimidines via the 7-position and the pyrazolopyrimidines via the 1 -position.
Structurally, the root oligonucleotide of the immunomodulatory nucleic acid molecule is a non- coding sequence that can include at least one unmethylated CpG motif. The relative position of any CpG sequence in ISS with immunomodulatory activity in certain mammahan species (e.g., rodents) is 5'-CG-3* (i.e., the C is in the 5' position with respect to the G in the 3' position).
Immunomodulatory nucleic acid molecules generally do not provide for, nor is there any requirement that they provide for, expression of any amino acid sequence encoded by the polynucleotide, and thus the sequence of a immunomodulatory nucleic acid molecule may be, and generally is, non-coding. Immunomodulatory nucleic acid molecules may comprise a linear double or single-stranded molecule, a circular molecule, or can comprise both linear and circular segments. Immunomodulatory nucleic acid molecules may be single-stranded, or may be completely or partially double-stranded.
In some embodiments, an immimomodulatory nucleic acid molecule is an oligonucleotide, e.g., consists of a sequence of from about 6 to about 200, from about 10 to about 100, from about 12 to about 50, or from about 15 to about 25, nucleotides in length.
Exemplary consensus CpG motifs of immunomodulatory nucleic acid molecules useful in the invention include, but are not necessarily limited to:
5'-Pιιrine-Purine-[C]-[G]-Pyrimid e-Pyrimidine-3', in which the immunomodulatory nucleic acid molecule comprises a CpG motif flanked by at least two purine nucleotides (e.g., GG,
GA, AG, AA, II, etc.,) and at least two pyrimidine nucleotides (CC, TT, CT, TC, UU, etc.); 5'-Pιu'ine-TCG-Pyrimidme-Pyrimidine-3';
5'-[TCG]n-3', where n is any integer that is 1 or greater, e.g., to provide a poly-TCG immunomodulatory nucleic acid molecule (e.g. , where n=3, the polynucleotide comprises the sequence 5'-TCGTCGTCG-3*); and 5*-Purine-Purine -CG-Pyrimidine-Pyrimidine-CG-3'.
Exemplary DNA-based immunomodulatory nucleic acid molecules useful in the invention include, but are not necessarily limited to, polynucleotides comprising the following nucleotide sequences: AACGCC, AACGCT, AACGTC, AACGTT; AGCGCC, AGCGCT, AGCGTC, AGCGTT; GACGCC, GACGCT, GACGTC, GACGTT; GGCGCC, GGCGCT, GGCGTC, GGCGTT; ATCGCC, ATCGCT, ATCGTC, ATCGTT; GTCGCC, GTCGCT, GTCGTC, GTCGTT; and TCGTCG, and TCGTCGTCG. Octameric sequences are generally the above-mentioned hexameric sequences, with an additional 3' CG. Exemplary DNA-based immunomodulatory nucleic acid molecules useful in the invention include, but are not necessarily limited to, polynucleotides comprising the following octameric nucleotide sequences:
AACGCCCG, AACGCTCG, AACGTCCG, AACGTTCG; AGCGCCCG, AGCGCTCG, AGCGTCCG, AGCGTTCG; GACGCCCG, GACGCTCG, GACGTCCG, GACGTTCG; GGCGCCCG, GGCGCTCG, GGCGTCCG, GGCGTTCG; ATCGCCCG, ATCGCTCG, ATCGTCCG, ATCGTTCG;
GTCGCCCG, GTCGCTCG, GTCGTCCG, and GTCGTTCG. Immunomodulatory nucleic acid molecules useful in the invention can comprise one or more of any of the above CpG motifs. For example, immunomodulatory nucleic acid molecules useful in the invention can comprise a single instance or multiple instances (e.g., 2, 3, 5 or more) of the same CpG motif. Alternatively, the immunomodulatory nucleic acid molecules can comprises multiple CpG motifs (e.g., 2, 3, 5 or more) where at least two of the multiple CpG motifs have different consensus sequences, or where all CpG motifs in the immunomodulatory nucleic acid molecules have different consensus sequences.
A non-limiting example of an immunomodulatory nucleic acid molecule has the sequence 5'- TGACTGTGAACGTTCGAGATGA-3' (SEQ ID NO: 1). An example of a control nucleic acid molecule is one having the sequence 5'-TGACTGTGAAgGTTCGAGATGA-3' (SEQ ID NO:2), which differs from SEQ ID NO: 1 at the nucleotide indicated in lower case type.
Immunomodulatory nucleic acid molecules useful in the invention may or may not include palindromic regions. If present, a palindrome may extend only to a CpG motif, if present, in the core hexamer or octamer sequence, or may encompass more of the hexamer or octamer sequence as well as flanking nucleotide sequences.
The core hexamer structure of the foregoing immunomodulatory nucleic acid molecules can be flanked upstream and/or downstream by any number or composition of nucleotides or nucleosides. However, ISS are at least 6 bases in length, and preferably are between 6 and 200 bases in length, to enhance uptake of the immunomodulatory nucleic acid molecule into target tissues.
In particular, immunomodulatory nucleic acid molecules useful in the invention include those that have hexameric nucleotide sequences having "CpG" motifs. Although DNA sequences are generally preferred, RNA immunomodulatory nucleic acid molecules can be used, with inosine and/or uracil substitutions for nucleotides in the hexamer sequences. Modifications
Immunomodulatory nucleic acid molecules can be modified in a vaπety of ways For example, the immunomodulatory nucleic acid molecules can compπse backbone phosphate group modifications (e g , methylphosphonate, phosphorothioate, phosphoroaimdate and phosphorodithioate lnternucleotide linkages), which modifications can, for example, enhance stability of the immunomodulatory nucleic acid molecule in vivo, making them particularly useful m therapeutic applications A particularly useful phosphate group modification is the conversion to the phosphorothioate or phosphorodithioate forms of an unmunomodulatory nucleic acid molecule Phosphorothioates and phosphorodithioates are more resistant to degradation in vivo than their unmodified oligonucleotide counterparts, increasing the half-lives of the immunomodulatory nucleic acid molecules and making them more available to the subject being treated
Other modified immunomodulatory nucleic acid molecules encompassed by the present mvention mclude immunomodulatory nucleic acid molecules having modifications at the 5' end, the 3' end, or both the 5 ' and 3 ' ends For example, the 5 ' and/or 3 ' end can be covalently or non-covalentiy conjugated to a molecule (either nucleic acid, non-nucleic acid, or both) to, for example, mcrease the bio-availabihty of the immunomodulatory nucleic acid molecules, mcrease the efficiency of uptake where desirable, facilitate delivery to cells of mterest, and the like Exemplary molecules for conjugation to the immunomodulatory nucleic acid molecules mclude, but are not necessaπly limited to, cholesterol, phosphohpids, fatty acids, sterols, ohgosacchaπdes, polypeptides (e g , lmmunoglobuhns), peptides, antigens (e g , peptides, small molecules, etc ), Imear or circular nucleic acid molecules (e g , a plasπud), and the like Additional immunomodulatory nucleic acid conjugates, and methods for making same, are known m the art and descπbed m, for example, WO 98/16427 and WO 98/55495 Thus, the term "immunomodulatory nucleic acid molecule" mcludes conjugates comprising an immunomodulatory nucleic acid molecule Immunomodulatory nucleic acid molecules m association with antigen
An immunomodulatory nucleic acid molecule may be provided in an admixture (l e , m solution) with antigen An immunomodulatory nucleic acid molecule may be provided m a configuration such that it is proximately associated with antigen In some embodiments, proximate association is achieved when an unmunomodulatory nucleic acid molecule is conjugated, covalently or non-covalently, to an antigen, e g , one or more allergens In other embodiments, proximate association is achieved by means other than conjugation
Admixtures
In some embodiments, an unmunomodulatory nucleic acid molecule is m admixture with one or more antigens, e g , one or more allergens, or an allergen extract When an unmunomodulatory nucleic acid molecule is in admixture with an antigen, the immunomodulatory nucleic acid molecule and the antigen are present m solution at concentrations effective to reduce an anaphylactic reaction in an antigen-specific manner Spatial proximation
Spatial proximation (proximate association) can be accomplished in a number of ways, mcludmg, covalent or non-covalent association, linkage, or attachment, and can be by conjugation as well as means other than conjugation Generally, an immunomodulatory nucleic acid molecule and an antigen are proximately associated at a distance sufficient or effective to reduce an anaphylactic reaction compared to administration of the unmunomodulatory nucleic acid molecule and the antigen m admixture Generally, the unmunomodulatory nucleic acid molecule and the antigen are proximately associated at a distance of from about 0 1 angstroms to about 100 μm, from about 1 angstroms to about 10 μm, from about 10 angstroms to about 1 μm, from about 100 angstroms to about 100 nm, or from about 1 nm to about 10 nm. or any range intermediate or overlapping with the foregomg ranges Spatial proximation by conjugation In some embodiments, an immunomodulatory nucleic acid molecule is conjugated, covalently or non-covalently, to an antigen Thus, the term "immunomodulatory nucleic acid molecule" mcludes conjugates compnsing an unmunomodulatory nucleic acid molecule Conjugates of nucleic acids an non-nucleic acid molecules, and methods for making same, are known m the art and descπbed m, for example, WO 98/16427, WO 98/55495, WO 00/21556, each of which is mcorporated by reference for their teachings relatmg to conjugates Further teachings relating to nucleic acid conjugates may be found in S L Beaucage, ed (1999) Current Protocols in Nucleic Acid Chemistry, John Wiley & Sons, and Kisakurek et al , eds (2000) Frontiers m Nucleic Acid Chemistry, John Wiley & Sons Where the antigen is a peptide. the peptide portion of the conjugate can be attached to the unmunomodulatory nucleic acid molecule through an amine, thiol, or carboxyl group in the peptide If the peptide antigen contains a suitable reactive group (e g , an N-hydroxysuccinirmde ester) an immunomodulatory nucleic acid molecule can be reacted directly with an epsilon ammo group of a lysme residue The peptide portion of the conjugate can be attached to the 3' end of the unmunomodulatory nucleic acid molecule through solid support chemistry For example, the immunomodulatory nucleic acid molecule portion can be added to a polypeptide portion that has been pre-synthesized on a solid support (see, e g , Haralambidis et al (1990) Nucl Acid Res 18 493-499, Haralambidis et al (1990) Nucl Acid Res 18 501-505) Alternatively, the unmunomodulatory nucleic acid molecule can be synthesized such that it is connected to a solid support through a cleavable linker extending from the 3' end Upon chemical cleavage of the immunomodulatory nucleic acid molecule from the support, a terminal thiol group, or a terminal ammo group, is left at the 3' end of the unmunomodulatory nucleic acid molecule (e g , Zuckermann et al (1987) Nucl Acids Res 15 5305-5321, Nelson et al (1989) Nucl Acids Res 17 1781-1794) Conjugation of an amino- modified immunomodulatory nucleic acid molecule to amino groups of the peptide can be performed as described (see, e.g., Benoit et al. (1987) Neuromethods 6:43-72). Conjugation of a thiol-modified immunomodulatory nucleic acid molecule to carboxyl groups of a peptide antigen can be performed as described (see, e.g., Sinah et al. (1991) Oligonucleotide Analogues: A Practical Approach, IRL Press). Coupling of an immunomodulatory nucleic acid molecule carrying an appended maleimide to the thiol side chain of a cysteine residue of a peptide can also be performed (see, e.g., Tung et al. (1991) Bioconj. Chem.12:464-465).
The peptide portion of a conjugate can be attached to the 5- end of an immunomodulatory nucleic acid molecule through an amine, thiol, or carboxyl group that has been incorporated into the immunomodulatory nucleic acid molecule during its synthesis (see, e.g., Agrawal et al. (1986) Nucleic Acids Res. 14:6227-6245; Bischoff et al. (1987) Anal. Biochem. 164:336-344; and U.S. Patent Nos. 4,849,513; 5,015,733; 5,118,800; and 5,118,802).
The linkage of an immunomodulatory nucleic acid molecule to a lipid can be formed using standard known methods. These methods include, but are not limited to, the synthesis of oligonucleotide-phospholipid conjugates, oligonucleotide-fatty acid conjugates, and oligonucleotide- sterol conjugates (see, e.g., Yanagawa et al. (1988) Nucleic Acids Symp. Ser. 19:189-192; Grabarek et al. (1990) Anal. Biochem. 185:131-135; and Boujrad et al. (1993) Proc. Natl. Acad. Sci. USA 90:5728-5731).
Linkage of an immunomodulatory nucleic acid molecule to an oligosaccharide or polysaccharide can be performed using standard known methods, including, but not limited to, the method described in O'Shannessy et al. (1985) J. Applied. Biochem. 7:347-355.
An immunomodulatory nucleic acid molecule-antigen conjugate can be formed through covalent bonds, as described above. An immunomodulatory nucleic acid molecule-antigen conjugate can also be formed through non-covalent interactions, such as ionic bonds, hydrophobic interactions, hydrogen bonds, and/or van der Waals attractions.
Where the antigen is a polypeptide, the polypeptide may be proximately associated directly or indirectly to an immunomodulatory nucleic acid molecule, e.g., conjugated to the immunomodulatory nucleic acid molecule via a linker molecule. A wide variety of linker molecules are known in the art and can be used in the conjugates. The linkage from the peptide to the oligonucleotide may be through a peptide reactive side chain, or the N- or C-terminus of the peptide. Linkage from the oligonucleotide to the peptide may be at either the 3' or 5' terminus, or internal. A linker may be an organic, inorganic, or semi-organic molecule, and may be a polymer of an organic molecule, an inorganic molecule, or a co-polymer comprising both inorganic and organic molecules. A linker may also be a bead derivatized to contain appropriate groups for attachment of an immunomodulatory nucleic acid molecule and an antigen. A wide variety of beads, including biodegradable beads, as well as methods of linking molecules to beads, are well known to those skilled in the art.
If present, the linker molecules are generally of sufficient length to permit oligonucleotides and/or polynucleotides and a linked polypeptide to allow some flexible movement between the oligonucleotide and the polypeptide. The linker molecules are generally about 6-50 atoms long. The linker molecules may also be, for example, aryl acetylene, ethylene glycol oligomers containing 2-10 monomer units, diamines, diacids, amino acids, or combinations thereof. Other linker molecules which can bind to oligonucleotides may be used in light of this disclosure. Spatial proximation by means other than conjugation In other embodiments, proximate association is achieved by means other than conjugation. An immumodulatory nucleic acid molecule can be proximately associated with one or more antigens in a number of ways. In some embodiments, an immumodulatory nucleic acid molecule and an antigen are proximately associated by encapsulation. In other embodiments, an immumodulatory nucleic acid molecule and an antigen are proximately associated by linkage to a platform molecule. A "platform molecule" is a molecule containing sites which allow for attachment of an immumodulatory nucleic acid molecule and one or more antigens. In other embodiments, an immumodulatory nucleic acid molecule and an antigen are proximately associated by adsorption onto a surface, such as a carrier particle.
In embodiments in which an immumodulatory nucleic acid molecule and an antigen are proximately associated by linkage to a platform molecule (also refeπed to herein as a "platform"), the platform may be proteinaceous or non-proteinaceous. A platform is generally multivalent (i.e., contains more than one binding, or linking, site) to accommodate binding to both an immumodulatory nucleic acid molecule and an antigen. Examples of proteinaceous platforms include, but are not limited to, albumin, gammaglobulin, immunoglobulin, and ovalbumin. Borel et al. (1990) Immunol. Methods 126:159-168; Dumas et al. (1995) Arch. Dermatol. Res. 287:123-128; Borel et al. (1996) Ann. NY. Acad. Sci. 778:80-87. Other examples of polymeric platforms are dextran, polyacrylamide, ficoll, carboxymethylcellulose, polyvinyl alcohol, polyvinylpyrrolidone, and poly D-glutamic acid/D- lysine. Other examples of platforms suitable for use within the present invention are chemically- defined, non-polymeric valency platforms such as those disclosed in U.S. Patent No. 5,552,391. Further examples of suitable platforms are derivatized 2,2t-ethylenedioxydiethylamine (EDDA); triethylene glycol (TEG); tetraaminobenzene; heptaaminobetacyclodextrin; tatraaminopentaeiythritol; 1,4,8, 11-tetraazacyclotetradecane; and 1,4,7, 10-tetraazacyclododecane.
Conjugation of an immumodulatory nucleic acid molecule and an antigen to a platform may be effected in any of a number of ways, generally involving one or more crosslinking agents and functional groups on the antigen, the immumodulatory nucleic acid molecule, and the platform molecule Linking groups are added to platforms usmg standard synthetic chemistry techniques
The principles of usmg platform molecules are well understood m the art Generally, a platform contains, or is deπvatized to contain, appropπate binding sites for immumodulatory nucleic acid molecules and antigen molecules In addition, or alternatively, the immumodulatory nucleic acid molecule and/or the antigen is deπvatized to provide appropπate linkage groups
Where the antigen and immunomodulatory nucleic acid molecule are proximately associated by encapsulation, smtable encapsulatmg agents mclude, but are not limited to, oil-in-water emulsions, nucrospheres, beads, macromoleculare complexes, nanocapsules, micelles, mixed micelles, microparticles, and hposomes The encapsulation composition may further compπse any of a wide vaπety of components, mcludmg, but not limited to, alum, hpids, surfactants, targeting moieties, phosphohpids, hpid membrane structures, polyethylene glycol, and other polymers, such as polypeptides, glycopeptides. and polysacchaπdes Encapsulatmg agents, as well as methods of making same, have been amply descπbed in the literature, and need not be elaborated upon herem For example, WO 00/21556, which provides a discussion of vaπous encapsulating agents, is mcorporated by reference herem for its teachings relatmg to encapsulatmg agents and methods of encapsulating a nucleic acid molecule and an antigen
In embodiments m which an immumodulatory nucleic acid molecule and an antigen are proximately associated by adsorption onto a surface, the surface may be m the form of a earner particle made with either an morgamc or orgamc core Smtable earner particles mclude, but are not limited to, nanocrystalline particles, activated carbon particles, and protein-ceramic nanoplates
Adsorption of nucleic acid molecules and other molecules such as polypeptides is well known m the art See, for example, Douglas et al (1987) Crit Rev Ther Drug Carrier Syst 3 233-261, Bousquet et al (1999) Pharm Res 16 141-147, and U S Patent No 5,460,831 The adsorbent surface may be biodegradable Adsorption of an immumodulatory nucleic acid molecule and/or an antigen to a surface may occur through non-covalent interactions
Antigens
Of interest m the methods of the mvention are immunomodulatory nucleic acid molecules m admixture, or in spatial proximation, with an antigen, which may be an allergen Antigens encompass a broad class of compounds, mcludmg. but not limited to, polypeptides, polysacchaπdes, glycoprotems, hpoproteins, and lipopolysacchandes Methods for preparing antigens of all types are well known m the art and need not be elaborated upon herem
Allergens
Allergens are immunogenic compounds that cause Th2-type T cell responses and IgE B cell responses, mast cell and basophil degranulation. and release of histamine and other mediators m susceptible individuals. As used herein, "allergen" encompasses purified allergen, allergenic fragments of an allergen, extracts from a source of allergen, and the like. Allergens of interest include food allergens, chemical allergens (e.g., drugs, cosmetics, and the like), plant-derived allergens, and animal- derived allergens. Allergens of interest according to the present invention include antigens found in foods such as fruits (e.g., melons, strawberries, pineapple and other tropical fruits), peanuts, peanut oil, other nuts, milk proteins, egg whites, shellfish, tomatoes, etc.; airborne antigens such as grass pollens, animal danders, house mite feces, etc.; drug antigens such as penicillins and related antibiotics, sulfa drugs, barbiturates, anticonvulsants, insulin preparations (particularly from animal sources of insulin), local anesthetics (e.g., Novocain), and iodine (found in many X-ray contrast dyes); insect venoms and agents responsible for allergic dermatitis caused by blood sucking arthropods such as Diptera, including mosquitos (Anopheles sp., Aedes sp., Culiseta sp., Culex sp.), flies (Phlebotomus sp., Culicoides sp.) particularly black flies, deer flies and biting midges, ticks (Dermmacenter sp., Omithodoros sp., Otobius sp.), fleas (e.g., the order Siphonaptera, including the genera Xenopsylla, Pulex and Ctenocephalides felis felis); and latex. The specific allergen may be any type of chemical compound such as, for example, a polysaccharide, a fatty acid moiety, a protein, etc. Antigen preparations may be prepared by any available technique including, for example, isolation from natural sources, in vivo or in vitro expression of recombinant DNA molecules (see, for example, Zeiler et al. (1997) J. Allergy Clin. Immunol. 100(6 Pt 1):721-727, chemical synthesis, or other technique known in the art. A wide variety of allergen preparations are available in the art, and many allergens have been molecularly cloned. For example, cloned allergens include Dermatophagoides pteryonyssinus (Der PI); Lol pl-V from rye grass pollen; various insect venoms including venom from jumper ant Myrmecia pilosula, Apis mellifera bee venom phospholipase A2 (PLA.sub.2) and antigen 5S, phospholipases from the yellow jacket Vespula maculifrons and white faced hornet Dolichovespula maculata; a large number of pollen proteins including birch pollen, ragweed pollen, Parol (the major allergen of Parietaria oficinalis) and the cross-reactive allergen Parjl (from Parietaria judaica) and other atmospheric pollens including Olea europaea, Artemisia sp., gramineae, etc. Polypeptide antigens A polypeptide antigen may be conjugated directly or indirectly, e.g., via a linker molecule, to an immunomodulatory nucleic acid molecule. A wide variety of linker molecules are known in the art and can be used in the conjugates. The linkage from the peptide to the oligonucleotide may be through a peptide reactive side chain, or the N- or C-terminus of the peptide. Linkage from the oligonucleotide to the peptide may be at either the 3 ' or 5' terminus, or internal. A linker may be an organic, inorganic, or semi-organic molecule, and may be a polymer of an organic molecule, an inorganic molecule, or a co-polymer comprising both inorganic and organic molecules. If present, the linker molecules are generally of sufficient length to permit oligonucleotides and/or polynucleotides and a linked polypeptide to allow some flexible movement between the oligonucleotide and the polypeptide. The linker molecules are generally about 6-50 atoms long. The linker molecules may also be, for example, aryl acetylene, ethylene glycol oligomers containing 2-10 monomer units, diamines, diacids, amino acids, or combinations thereof. Other linker molecules which can bind to oligonucleotides may be used in light of this disclosure.
Peptides may be synthesized chemically or enzymatically, may be produced recombinantly, may be isolated from a natural source, or a combination of the foregoing. Peptides may be isolated from natural sources using standard methods of protein purification known in the art, including, but not limited to, HPLC, exclusion chromatography, gel electrophoresis, affinity chromatography, or other purification technique. One may employ solid phase peptide synthesis techniques, where such techniques are known to those of skill in the art. See Jones, The Chemical Synthesis of Peptides (Clarendon Press, Oxford)(1994). Generally, in such methods a peptide is produced through the sequential additional of activated monomeric units to a solid phase bound growing peptide chain. Well-established recombinant DNA techniques can be employed for production of peptides. Preparation of immunomodulatory nucleic acid molecules
Immunomodulatory nucleic acid moleculse can be synthesized using techniques and nucleic acid synthesis equipment that are well known in the art. For reference in this regard, see, e.g., Ausubel, et al., Current Protocols in Molecular Biology, Chs. 2 and 4 (Wiley Interscience, 1989); Maniatis, et al., Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab. New York, 1982); U.S. Patent No. 4,458,066 and U.S. Patent No. 4,650,675. Because the immunomodulatory nucleic acid molecule is non-coding, there is no concern about maintaining an open reading frame during synthesis.
Alternatively, an immunomodulatory nucleic acid molecule can be isolated from microbial species using techniques well known in the art, such as nucleic acid hybridization. Whole are fragmented bacterial DNA can be used. Preferably, such isolated immunomodulatory nucleic acid molecules will be purified to a substantially pure state; i.e., to be free of endogenous contaminants, such as lipopolysaccharides. Formulations
In general, immunomodulatory nucleic acid molecules are prepared in a pharmaceutically acceptable composition for delivery to a host. Pharmaceutically acceptable carriers preferred for use with the immunomodulatory nucleic acid molecules in the subject methods may include sterile aqueous of non-aqueous solutions, suspensions, and emulsions. Examples of non-aqueous solvents are propylene glycol, polyethylene glycol, vegetable oils such as olive oil, and injectable organic esters such as ethyl oleate. Aqueous carriers include water, alcoholic/ aqueous solutions, emulsions or suspensions, and microparticles, including saline and buffered media. Parenteral vehicles include sodium chlonde solution, Ringer's dextrose, dextrose and sodium chloπde, lactated Ringer's or fixed oils Intravenous vehicles mclude fluid and nutπent replenishers, electrolyte replemshers (such as those based on Rmger's dextrose), and the like A composition compnsmg a immunomodulatory nucleic acid molecule may also be lyophihzed usmg means well known m the art, for subsequent reconstitution and use accordmg to the mvention Also of interest are formulations for hposomal delivery, and formulations compnsmg microencapsulated immunomodulatory nucleic acid molecules
In general, the pharmaceutical compositions can be prepared m vaπous forms, such as granules, tablets, pills, suppositones, capsules, suspensions, salves, lotions and the like Pharmaceutical grade organic or morgamc earners and/or diluents smtable for oral and topical use can be used to make up compositions compnsmg the therapeutically active compounds Diluents known to the art mclude aqueous media, vegetable and animal oils and fats Stabilizing agents, wetting and emulsifying agents, salts for varying the osmotic pressure or buffers for securing an adequate pH value, and skin penetration enhancers can be used as auxiliary agents Preservatives and other additives may also be present such as, for example, antimicrobials, antioxidants, chelating agents, and inert gases and the like
Immunomodulatory nucleic acid molecules can be administered m the absence of agents or compounds that might facilitate uptake by target cells (e g , as a "naked" polynucleotide, e g , a polynucleotide that is not encapsulated by a viral particle) Immunomodulatory nucleic acid molecules can be admimstered with compounds that facilitate uptake of unmunomodulatory nucleic acid molecules by target cells (e g , by macrophages) or otherwise enhance transport of an unmunomodulatory nucleic acid molecule to a treatment site for action Absorption promoters, detergents and chemical lrπtants (e g , keratinolytic agents) can enhance transmission of an immunomodulatory nucleic acid molecule composition mto a target tissue (e g , through the skm) For general principles regarding absorption promoters and detergents which have been used with success m mucosal delivery of orgamc and peptide-based drugs, see, e g , Chien, Novel Drug Delivery Systems, Ch 4 (Marcel Dekker, 1992) Examples of smtable nasal absorption promoters m particular are set forth at Chien, supra at Ch 5, Tables 2 and 3, milder agents are prefeπed Smtable agents for use m the method of this mvention for mucosal nasal delivery are also descπbed m Chang, et al , Nasal Drug Delivery, "Treatise on Controlled Drug Delivery", Ch 9 and Tables 3-4B thereof, (Marcel Dekker, 1992) Smtable agents which are known to enhance absorption of drugs through skm are descnbed in Sloan, Use of Solubility Parameters from Regular Solution Theory to Descnbe Partitioning-Dnven Processes, Ch 5, "Prodrugs Topical and Ocular Drug Delivery" (Marcel Dekker, 1992), and at places elsewhere m the text All of these references are mcorporated herem for the sole purpose of illustrating the level of knowledge and skill m the art concerning drug delivery techniques A colloidal dispersion system may be used for targeted delivery of the immunomodulatory nucleic acid molecules to specific tissue Colloidal dispersion systems mclude macromolecule complexes, nanocapsules, microspheres, beads, and pid-based systems mcludmg oil-in-water emulsions, micelles, mixed micelles, and hposomes Liposomes are artificial membrane vesicles which are useful as delivery vehicles m vitro and in vivo It has been shown that large umlamellar vesicles (LUV), which range m size from 0 2-4 0 Fm can encapsulate a substantial percentage of an aqueous buffer compnsmg large macromolecules RNA and DNA can be encapsulated within the aqueous mteπor and be delivered to cells m a biologically active form (Fraley, et al , (1981) Trends Biochem Sci , 6 77) The composition of the hposome is usually a combination of phosphohpids, particularly high-phase-transition-temperature phosphohpids, usually m combination with steroids, especially cholesterol Other phosphohpids or other hpids may also be used The physical characteπstics of liposomes depend on pH, ionic strength, and the presence of divalent cations Examples of hpids useful m hposome production mclude phosphatidyl compounds, such as phosphatidylglycerol, phosphatidylcholme, phosphatidylseπne, phosphatidylethanolamme, sphingohpids, cerebrosides, and ganghosides Particularly usefiil are diacylphosphatidylglycerols, where the hpid moiety contains from 14-18 carbon atoms, particularly from 16-18 carbon atoms, and is saturated Illustrative phosphohpids mclude egg phosphatidylcholme, dipalmitoylphosphatidylcholme and distearoylphosphatidylchohne
Where desired, targeting of hposomes can be classified based on anatomical and mechanistic factors Anatomical classification is based on the level of selectivity, for example, organ-specific, cell- specific, and organelle-specific Mechanistic targeting can be distinguished based upon whether it is passive or active Passive targeting utilizes the natural tendency of liposomes to distribute to cells of the reticulo-endothehal system (RES) m organs which contain sinusoidal capillaπes Active targeting, on the other hand, mvolves alteration of the hposome by couplmg the hposome to a specific hgand such as a monoclonal antibody, sugar, glycohpid, or protem, or by changing the composition or size of the hposome m order to achieve targeting to organs and cell types other than the naturally occurring sites of localization
The surface of the targeted delivery system may be modified m a vaπety of ways In the case of a hposomal targeted delivery system, hpid groups can be mcorporated mto the hpid bilayer of the hposome m order to maintain the targeting hgand m stable association with the hposomal bilayer
Vanous well known linking groups can be used for joining the hpid chains to the targeting hgand (see, e g , Yanagawa, et al , (1988) Nuc Acids Symp Ser , 19 189, Grabarek, et al , (1990) Anal
Biochem , 185 131, Staros, et al , (\9$6) Anal Biochem 156 220 and Boujrad, et al , (1993) Proc
Natl Acad Sci USA, 90 5728) Targeted delivery of unmunomodulatory nucleic acid molecules can also be achieved by conjugation of the unmunomodulatory nucleic acid molecules to a the surface of viral and non-viral recombmant expression vectors, to an antigen or other hgand, to a monoclonal antibody or to any molecule which has the desired bmdmg specificity Routes of administration
Immunomodulatory nucleic acid molecules are administered to an individual usmg any available method and route suitable for drug delivery, mcludmg in v vo and ex vivo methods, as well as systemic, mucosal, and localized routes of administration
Conventional and pharmaceutically acceptable routes of administration mclude lntranasal, intramuscular, mtratracheal, intratumoral, subcutaneous, lntradermal, topical application, intravenous, rectal, nasal, oral and other parenteral routes of administration Routes of administration may be combmed, if desired, or adjusted dependmg upon the unmunomodulatory nucleic acid molecule and/or the desired effect on the immune response The immunomodulatory nucleic acid composition can be administered m a single dose or in multiple doses, and may encompass administration of booster doses, to elicit and/or maintain the desired effect on the immune response
Immunomodulatory nucleic acid molecules can be administered to a host usmg any available conventional methods and routes suitable for delivery of conventional drugs, mcludmg systemic or localized routes In general, routes of administration contemplated by the mvention mclude, but are not necessaπly limited to, enteral, parenteral, mucosal (e g , lntranasal), or inhalational routes Inhalational routes may be prefeπed m cases of pulmonary mvolvement, particularly m view of the activity of certain unmunomodulatory nucleic acid molecules m reducmg an anaphylactic response Inhalational routes of administration (e g , lntranasal, intrapulmonary, and the like) are of mterest Such means mclude inhalation of aerosol suspensions or insufflation of the polynucleotide compositions descnbed herem Nebulizer devices, metered dose inhalers, and the like suitable for delivery of polynucleotide compositions to the nasal mucosa, trachea and bronchioh are well known m the art and will therefore not be descπbed m detail here For general review in regard to lntranasal drug delivery, see, e g , Chien, Novel Drug Delivery Systems, Ch 5 (Marcel Dekker, 1992)
Parenteral routes of administration other than inhalation administration mclude, but are not necessaπly limited to, topical, ophthalmic, transdermal, subcutaneous, intramuscular, intraorbital, intracapsular, intraspinal, intrastemal, lntranasal, intraocular, and mtravenous routes, I e , any route of administration other than through the alimentary canal Parenteral administration can be earned to effect systemic or local delivery of immunomodulatory nucleic acid molecules Where systemic delivery is desired, administration typically mvolves mvasive or systemically absorbed topical or mucosal administration of pharmaceutical preparations Immunomodulatory nucleic acid molecules can also be delivered to the subject by enteral administration Enteral routes of admmistration mclude, but are not necessaπly limited to, oral and rectal (e g , usmg a suppository) delivery Methods of administration of immunomodulatory nucleic acid molecules through the skm or mucosa mclude, but are not necessanly limited to. topical application of a smtable pharmaceutical preparation, transdermal transmission, injection and epidermal administration For transdermal transmission, absorption promoters or iontophoresis are suitable methods For review regarding such methods, those of ordinary skill m the art may wish to consult Chien, supra at Ch 7 Iontophoretic transmission may be accomplished usmg commercially available "patches" which deliver their product contmuously via electee pulses through unbroken skm for penods of several days or more An exemplary patch product for use m this method is the LECTRO PATCH™ (manufactured by General Medical Company, Los Angeles, CA) which electronically maintains reservoir electrodes at neutral pH and can be adapted to provide dosages of diffenng concentrations, to dose contmuously and/or to dose penodically
Epidermal aclministration can be accomplished by mechanically or chemically lrntatmg the outermost layer of the epidermis sufficiently to provoke an immune response to the lrπtant An exemplary device for use m epidermal administration employs a multiplicity of very narrow diameter, short tynes which can be used to scratch unmunomodulatory nucleic acid molecules coated onto the tynes mto the skm The device mcluded m the MONO-VACC™ tuberculin test (manufactured by Pasteur Meneux, Lyon, France) is smtable for use m epidermal administration of unmunomodulatory nucleic acid molecules
The mvention also contemplates opthalmic administration of immunomodulatory nucleic acid molecules, which generally mvolves mvasive or topical application of a pharmaceutical preparation to the eye Eye drops, topical creams and lnjectable liquids are all examples of suitable formulations for delivering drugs to the eye
In some embodiments, unmunomodulatory nucleic acid molecule and antigen are co- admimstered In these embodiments, the immunomodulatory nucleic acid molecule and the antigen may be administered substantially simultaneously, or the unmunomodulatory nucleic acid molecule may be admimstered before or after the antigen When co-administered, the unmunomodulatory nucleic acid molecule and the antigen are generally admimstered within about 72 hours, about 48 hours, about 24 hours, about 12 hours, about 8 hours, about 4 hours, about 2 hours, about 1 hour, or about 30 minutes or less, of each other Antigen may be admimstered separately from the immunomodulatory nucleic acid molecule, m admixture with unmunomodulatory nucleic acid molecule, or proximately associated with (e g , conjugated or brought mto spatial proximation by other means, as descnbed m more detail below) to one or more unmunomodulatory nucleic acid molecules
Dosages
Although the dosage used will vary depending on the clinical goals to be achieved, a smtable dosage range is one that provides up to about 1 μg to about 1,000 μg or about 10,000 μg of immunomodulatory nucleic acid molecule can be administered in a single dosage. Alternatively, a target dosage of immunomodulatory nucleic acid molecule can be considered to be about 1-10 μM in a sample of host blood drawn within the first 24-48 hours after administration of immunomodulatory nucleic acid molecules. In general, doses of allergen are those which are in practice for allergen-based immunotherapy. Based on current studies, immunomodulatory nucleic acid molecules are believed to have little or no toxicity at these dosage levels.
It should be noted that the immunotherapeutic activity of immunomodulatory nucleic acid molecules is generally dose-dependent. Therefore, to increase immunomodulatory nucleic acid molecules potency by a magnitude of two, each single dose is doubled in concentration. Increased dosages may be needed to achieve the desired therapeutic goal. The invention thus contemplates administration of multiple doses to provide and maintain a reduction in a symptom associated with anaphylaxis. For example, immunomodulatory nucleic acid molecules may be administered at intervals ranging from at least every two weeks to every four weeks (e.g., monthly intervals) (e.g., every four weeks). In view of the teaching provided by this disclosure, those of ordinary skill in the clinical arts will be familiar with, or can readily ascertain, suitable parameters for administration of immunomodulatory nucleic acid molecule according to the invention, including combination of immunomodulatory nucleic acid molecule administration with conventional treatments to prevent anaphylactic reaction such as anti-histamines, glucosteroids, and the like.
EXAMPLES Example 1 : Protection against the development of anaphylactic hvpersensitivitv Materials and Methods Mice: Female 6-8 wk C3H/HeJ mice were purchased from Jackson Laboratory (Bar Harbor, ME). All mice were maintained in the University of California, San Diego Animal Facility, which is certified by the American Association for the Accreditation of Laboratory Animal Care, and all experiments were approved by the animal care committee at our institution.
Reagents: pACB-LacZ contains the CMV IE1 promoter-intron , the simian virus 40 t-intron, the E. coh LacZ cDNA, and the simian virus 40 polyadenylation site. pACB is the same construct without the E. coli LacZ insert. Plasmids were purified using a megaprep kit (Qiagen, Chatsworth, CA), and endotoxin was removed by extraction with Triton X-l 14 (Sigma, St Louis, MO) to below the limits of detection (0.005 EU/ml) by limulus amoebocyte lysate assay (Bio-Whittaker, Walkersville, MD). β- galactosidase (β-gal), and pertussis toxin were obtained from Sigma (St Louis, MO). Phosphorothioate ISS-ODN and mutated oligodeoxynucleotide were purchased from Trilink Biotechnologies (San Diego, CA). The ISS-ODN used in these studies has the sequence 5 '-TGACTGTGAACGTTCGAGATGA-3 ' (SEQ ID NO 1) and the mutated ohgodeoxynucleotide (M-ODN) has the sequence 5'- TGACTGTGAACCTTCCAGATGA-3' (SEQ ID NO 2) Endotoxin could not be detected m these ohgodeoxynucleotide preparations by lunulus amoebocyte lysate assay (Bio-Whittaker) Vaccination, sensitizatton, and anaphylactic challenge protocols The timetable for vaccination, sensitization, and anaphylactic challenge is shown m Figure 1 Mice received intradermal (i d ) injections with 50μg of pACB-LacZ or pACB, or β-gal (lOμg) alone, or mixed with ISS-ODN (lOμg) or M-ODN (lOμg), m 50μl normal saline, m the base of the tail, on 3 occasions, ten days apart Twenty five days after the last vaccination, the mice were Th sensitized with a mixture of β-gal (lOOμg), pertussis toxin (300ng), and alum (lmg), m 500μl normal saline injected lntrapeπtoneally (l p ) on 2 occasions 7 days apart Mice received an mtravenous (I v ) challenge with 150μg of β-gal m 50μl normal saline 3 weeks after their last I p sensitization The mice were then observed for one hour after l v anaphylactic challenge because preluninary experiments demonstrated that challenged mice either died or recovered from challenge m this first hour Ten minutes before, and 2 minutes after challenge a subset of mice were bled and plasma collected m EDTA tubes for histamine analysis using a commercial ELISA kit according to the manufacturers recommendations (IMMUNOTECH,
Westbrook, MN) Mice used to assess histamine release were not used m the final analysis of death from anaphylactic challenge
Antibody assays Serum β-gal specific IgG2a and IgGl were measured by ELISA as previously descπbed (13, 18,19,21) Results are expressed in units/ml (U/ml) based on pooled high titer anti-β-gal IgG2a and IgGl standards which were given arbitrary concentrations of 4,000 U/ml Nmety six well plates were coated with 5μg/ml of β-gal (Sigma) m 50 μl BBS (pH-9 2) overnight at 4°C Plates were then blocked with 1%BSA m BBS at 37°C for 2 hours, washed with BBS/0 5% Tween 20 (Sigma), and mcubated with standards and samples overnight at 4°C Plates were then mcubated with alkaline phosphatase linked anti-IgGl or IgG2a (Southern Biotechnologies, Biπmngham, AL) at a 1 2000 dilution, washed, and then mcubated with p-mtrophenyl phosphate (2 63 mg/ml, Boehnnger
Mannheim) Absorbance at 405nm-650nm was read at 1 hour Sample concentrations were calculated by comparison with the standard curve on each plate usmg the DeltaSOFT II v 3 66 program (Biometalhcs, Princeton, NJ) Antigen specific serum IgE liters were also measured by ELISA, and results are expressed m U/ml based on a pooled high titer anti-β-gal IgE standard given an arbitrary value of 2,560 U/ml In order to remove antigen specific IgG, serum samples were mcubated with protem G sepharose beads according to the manufacturer's recommendations (Pharmacia, Piscataway, NJ) Nmety six well plates were coated withβ-gal at 5μg/ml m 0 05 M carbonate buffer and non-specific binding sites were saturated by incubation of plates with 1% BSA m BBS Protem G absorbed 1 10 and 1 40 dilutions of sera were added and the plates mcubated overnight at 4°C Plates were then washed and mcubated with goat biotinylated anti-mouse IgE at 8μg/ml (Phaπmngen, San Diego, CA) Plates were subsequently washed and mcubated with horseradish peroxidase linked strepavidm at a 1 2000 dilution (Zymed, San Francisco, CA) and then TMB substrate (3,3',5,5'-tetramethyl benzidme, Kirkegaard and Perry Laboratones, Gaithersburg, MD) The color reaction was stopped with an equal volume of IM phosphonc acid Absorbance at 450nm-650nm was read and compared to the standard curve on each plate usmg the DeltaSOFT II v 3 66 program (Biometal cs, Princeton, NJ)
Splenocyte cytokine profiles Antigen specific splenocyte cytokine profiles were assessed as previously descπbed Sato et al (1996) Science 273 352-354 , Roman et al (1997) Nature Med 3 849-854, and Horner et al (1998) Cell Immunol 190 77-82 Bnefly, mouse spleens were harvested after l v challenge, teased to prepare smgle cell suspensions and resuspended m RPMI 1640 supplemented with 10"% heat-inactivated fetal calf serum, 2mM-glutamιne, β2-mercaptoethanol, and 1% penicillin- streptomyc (complete media) Splenocytes were mcubated at 5 X 10-* cells per well in 96 well plates m a final volume of 200μl of complete media with β-gal added at lOμg/ml at 37°C/5% CO2 Culture supernatants were harvested at 72 hours and analyzed by ELISA Samples were tested for the presence of IL-4, IL-5, and IFNγ by ELISA usmg capture and biotinylated detecting antibodies for IL-4
(Genzyme, San Francisco), IL-5 (Pharmingen) and IFNγ (Pharmingen) Washing and blocking steps were analogous to those used m the Ig ELISA descnbed previously Detection of the biotinylated secondary antibody was performed by adding 1 2000 diluted horseradish peroxidase (HP)-labeled streptavidin (Zymed) followed by TMB peroxidase substrate reagent (Kirkegaard and Perry Laboratones Incorporated) The color reaction was stopped with an equal volume of IM phosphonc acid and absorbance was read at 450nm-650nm A standard curve was generated usmg known amounts of recombinant IL-4, IL-5 and IFNγ (Genzvme and Pharmingen) Each supernatant was compared to the standard curve on the plate to quantitate cytokine levels usmg the DeltaSOFT II v 3 66 program Statistics Statistical analysis was conducted usmg Statview and Mathsoft computer software Death as an outcome vanable was compared between groups usmg the Fisher's exact test Two tailed unpaired student t tests were conducted to compare histamine, antibody, and cytokine histamine levels Results pDNA vaccination provides protection against the development of anaphylactic hypersensitivity In preliminary studies, 6-8 week old female C3H/HeJ mice were sensitized with β-gal, alum, and pertussis toxin and subsequently received an mtravenous (1 v ) β-gal challenge Sensitizing doses and dosing intervals were optimized to mduce death in 16 of 16 consecutive mice after 1 v challenge Next, the protective effect of pACB-LacZ vaccination on outcomes after sensitization and challenge was evaluated The timetable for vaccmation, sensitization, and challenge is outlined m figure 1 As shown in table 1, pACB-LacZ vaccination protected 5/15 mice from death in 4 experiments, while 0/16 pACB vaccinated mice survived challenge (p = 0.018). Table 1
Vaccination Survival % Survival p value
Figure imgf000026_0001
Despite the protection offered by pACB-LacZ vaccination, mice surviving challenge demonstrated behavioral changes, such as decreased activity, and rapid and labored respirations, consistent with mild anaphylactic reactions within the first 30 minutes. However, by the end of the first hour mice surviving the anaphylactic challenge appeared normal. To evaluate whether pACB-LacZ vaccination reduced mast cell degranulation from Th2 sensitized and challenged mice, plasma histamine levels were measured before and 2 minutes after i.v. β-gal injection. Prior to anaphylactic challenge, plasma histamine levels were less then lOnM in all mice. As seen in figure 2, post challenge plasma histamine levels increased in all mice. However, they were significantly lower in pACB-LacZ vaccinated (7.4 + 3 μM) versus pACB vaccinated (41 + 13μM) mice (p = 0.018).
Example 2: pDNA vaccination effectively inhibits the development of a Tin biased immune response after allergen sensitization
As anaphylactic hypersensitivity is associated with Th2 biased immunity, β-gal specific antibody and cytokine profiles of vaccinated/sensitized mice were further evaluated. As seen in figure 3 A, antigen specific IgE levels were on average 15 fold lower in pACB-LacZ versus pACB vaccinated mice (p < 0.0001). In addition, pACB-LacZ vaccinated mice produced approximately 3 fold less lgGl(p = 0.002) and 4 fold more antigen specific IgG2a then pACB vaccinated mice (p = 0.0004). Splenocytes from mice vaccinated with pACB-LacZ prior to sensitization also demonstrated significantly higher antigen specific IFNγ(p = 0.0002) and lower IL-4 (p = 0.024) and IL-5 (p = 0.012) responses than control mice (figure 3B).
Example 3: Protein/ISS-ODN vaccination prevents the development of anaphylactic hypersensitivity Protein/ISS-ODN co-immunization and plasmid vaccination induce similar immune profiles (18-22). Therefore, the efficacy of β-gal/ISS-ODN vaccination in protecting against the development of anaphylactic hypersensitivity was next evaluated. Mice were vaccinated with β-gal and ISS-ODN, and then sensitized and i.v. challenged with the model allergen (figure 1). Control mice were immunized with ISS-ODN or β-gal alone, or β-gal plus M-ODN. As seen in table 2, in 3 experiments 5/12 β- gal/ISS-ODN vaccinated mice survived i.v. β-gal challenge versus 0/36 control mice receiving β-gal or ISS-ODN, or β-gal and M-ODN vaccinations (p = 0.01 for β-gal/ISS-ODN vaccination versus each control group). Table 2
Vaccination Survival % Survival p value
Figure imgf000027_0001
Again, surviving mice demonstrated behavioral changes consistent with a mild anaphylactic reaction within the first 30 minutes, but all surviving mice appeared normal 1 hour after i.v. challenge. Plasma histamine levels, before and after challenge, were also measured. Plasma histamine levels were less then lOnM in all mice prior to challenge. As seen in figure 4, post challenge histamine levels increased in all mice, but they were significantly lower in β-gal/ISS-ODN vaccinated mice (6.1 + 2.7μM) then mice vaccinated with β-gal (25.2 ± 1 lμM) or ISS-ODN (26 + 6μM) alone, or mice vaccinated with β- gal and M-ODN (29 ± 7.8 μM)(P< 0.05).
Example 4: Protein/ ISS-ODN vaccination effectively inhibits the development of a Th biased immune response after allergen sensitization
To establish whether β-gal/ISS-ODN vaccination prevented the development of a Th biased immune profile after β-gal/alum pertussis toxin sensitization, serum antibody and splenic cytokine profiles of β- gal/ISS-ODN vaccinated and control mice were evaluated. As seen in Figure 5A, β-gal/ISS-ODN vaccinated mice had greater than 9 fold lower serum IgE levels then control immunized mice (p < 0.035). In addition, although β-gal/ISS-ODN vaccinated mice had similar IgGl levels to control mice, IgG2a levels were 8-fold higher (p < 0.007). β-gal ISS-ODN vaccinated mice also produced significantly more IFNy.(p < 0.03) and significantly less IL-4 (p < 0.04) and IL-5 (p < 0.002) than control mice (figure 5B).
Example 5: Protein ISS vaccination reduces histamine release in allergen-sensitized mice C3H/HeJ mice received i.d. vaccinations with 50 μg of pACB-LacZ or pACB on 3 occasions 10 days apart. Twenty five days after the last vaccination, mice were Th2 sensitized with a mixture of β-gal (100 μg), pertussis toxin (300 ng), and alum (1 mg) injected i.p. on 2 occasions 7 days apart. Mice then received an i.v. challenge with 150 μg of β-gal 3 weeks after their last i.p. sensitization. Plasma histamine levels were determined 2 minutes after challenge, p values for survival were determined by Fisher's exact test, and p values for histamine release were determined by unpaired 2 tailed Student's t test. Mice that died did so within 1 hour of challenge. Surviving mice demonstrated signs of anaphylaxis within the first half hour after challenge but appeared healthy 1 hour later. The results are shown in Table 3.
Table 3: Anaphylactic challenge outcomes of pACB-LacZ vaccinated mice Vaccination Survival % Survival Histamine
Figure imgf000028_0001
As shown in Table 3, pACB-LacZ vaccination protected 5/15 mice from death in 4 experiments, while 0/16 mice vaccinated with a LacZ deficient plasmid (pACB) survived challenge. Consistent with the outcomes of challenged mice, post challenge plasma histamine levels were also significantly lower in pACB-LacZ versus pACB vaccinated mice (Table 3). Anaphylactic hypersensitivity is associated with Th2 biased immunity, and in humans is dependent on IgE production. Therefore, β-gal specific antibody and cytokine profiles of gene vaccinated/sensitized mice were further evaluated. IgE levels were on average 15 -fold lower in pACB-LacZ versus pACB vaccinated mice. In addition, pACB-LacZ vaccinated mice produced approximately 3-fold less IgGland 4-fold more antigen specific IgG2a than pACB vaccinated mice. Splenocytes from mice vaccinated with pACB-LacZ prior to sensitization further demonstrated a Thl bias with significantly higher antigen specific IFNγ and lower IL-4 and IL-5 responses than control mice.
The efficacy of β-gal/ISS-ODN vaccination in protecting against the development of anaphylactic hypersensitivity was also evaluated. C3H/HeJ mice received i.d. vaccinations with ISS- ODN(10 μg) and β-gal (10 μg), ISS-ODN or β-gal alone or β-gal plus M-ODN (10 μg) on 3 occasions 10 days apart. Twenty five days after the last vaccination, mice were Th2 sensitized with a mixture of β-gal (100 μg), pertussis toxin (300 ng), and alum (1 mg) injected i.p. on 2 occasions 7 days apart. Mice then received an i.v. challenge with 150 μg of β-gal 3 weeks after their last i.p. sensitization. Plasma histamine levels were determined 2 minutes after challenge, p values for survival were determined by Fisher's exact test, andp values for histamine release were determined by unpaired 2 tailed Student's t test. Mice that died did so within 1 hour of challenge. Surviving mice demonstrated signs of anaphylaxis within the first half hour after challenge but appeared healthy 1 hour later. Mice were vaccinated with β-gal and ISS-ODN, and then sensitized and i.v. challenged with the model allergen, in a manner analogous to that described for the gene vaccination studies. One immunization control group received β-gal alone, the experimental equivalent of allergen extracts used in clinical practice. Other control mice were injected with ISS-ODN alone or β-gal plus a non-stimulatory mutated ohgodeoxynucleotide (M-ODN) derived by guanine to cytosine base substitutions in the 2 CpG dinucleotides found within the parent ISS-ODN. The results are shown in Table 4. Table 4: Anaphylactic challenge outcomes of β-gal/ISS-ODN vaccinated mice Vaccination Survival % Survival Histamine β-gal + ISS-ODN 5/12 42% (p - =0.01) 6.1 ± 2.7 μM (p < 0.05)
ISS-ODN 0/12 0% 25.2 ± 11 μM β-gal 0/12 0% 26 ± 6 μM β-gal + M-ODN 0/12 0% 29 ± 7.8 μM
As seen in Table 4, in 3 experiments 5/12 β-gal/ISS-ODN vaccinated mice survived i.v. β-gal challenge versus 0/36 control mice receiving β-gal or ISS-ODN, or β-gal and M-ODN. Post challenge histamine levels were also significantly lower in β-gal/ISS-ODN vaccinated versus control mice. Like pACB-LacZ vaccinated mice, those immunized with β-gal and ISS-ODN demonstrated a 90% decrease in serum IgE post sensitization when compared to controls. In addition, while β-gal/ISS-ODN vaccinated mice had similar IgGl levels to control mice, IgG2a levels were 8 -fold higher. Furthermore, splenocytes from β-gal ISS-ODN vs. control vaccinated mice demonstrated an antigen specific Thl cytokine bias reflected in elevated IFNγ and depressed IL-4 and IL-5 production upon culture with allergen.
Those skilled in the art will appreciate that the conceptions and specific embodiments disclosed in the foregoing description may be readily utilized as a basis for modifying or designing other embodiments for carrying out the same purposes of the present invention.

Claims

CLAIMS What is claimed is:
1. A method for reducing a symptom associated with anaphylactic hypersensitivity in a subject comprising administering to an individual a nucleic acid molecule comprising an immunomodulatory nucleic acid molecule in an amount sufficient to reduce at least one anaphylaxis-associated symptom, wherein the immunomodulatory nucleic acid molecule comprises the sequence 5'-C-G-3'.
2. The method of claim 1, wherein the immunomodulatory nucleic acid molecule is co- administered with an allergen or allergen extract.
3. The method of claim 2, wherein the immunomodulatory nucleic acid molecule and the allergen are admixed.
4. The method of claim 2, wherein the immunomodulatory nucleic acid molecule and the allergen are in proximate association.
5. The method of claim 4, wherein the immunomodulatory nucleic acid molecule is conjugated to the allergen.
6. The method of claim 1, wherein the reducing comprises reducing risk of death.
7. The method of claim 1, wherein the immunomodulatory nucleic acid molecule comprises the sequence 5 '-purine-purine-C-G-pyriimdine-pyrimidine.
8. The method of claim 1 , wherein the immunomodulatory nucleic acid molecule comprises the sequence 5 '-purine-T-C-G-pyrimidine-pyrirnidine-3 ' .
9. The method of claim 1, wherein the immunomodulatory nucleic acid molecule comprises the sequence 5 '-(TCG)n-3 ', wherein n is any integer that is 1 or greater.
10. The method of claim 1 , wherein the immunomodulatory nucleic acid molecule is admimstered via a topical, mucosal, enteral, or systemic route.
11. The method of claim 10, wherein the topical route is intranasal, ophthalmic, oral, intratracheal, intravaginal, transdermal or intrarectal.
12. The method of claim 10, wherein the systemic route is intradermal, intramuscular, or subcutaneous.
13. The method according to claim 1 , wherein the allergen is a drug allergen.
14. The method according to claim 13, wherein the allergen is a food allergen.
15. The method according to claim 13, wherein the allergen is a plant allergen.
16. The method according to claim 13 , wherein the allergen is an animal allergen.
17. The method of claim 1 , wherein the anaphylaxis-associated symptom is selected from the group consisting of elevated IgE level, elevated histamine level, constriction of the airways, and difficult breathing.
18. A method for reducing the risk of anaphylactic hypersensitivity in a subject comprising administering to an individual a nucleic acid molecule comprising an immunomodulatory nucleic acid molecule in an amount sufficient to reduce to reduce the risk of anaphylactic hypersensitivity, wherein the immunomodulatory nucleic acid molecule comprises a sequence selected from the group consisting of 5'-purine-purine-C-G-p*yriπudine-pyrimidine, 5'-purine- T-C-G-pyrimidine-pyrimidine-3', and 5'-(TCG)n-3', wherein n is any integer that is 1 or greater.
19. A method for reducing the risk of anaphylactic shock in a subject comprising adrnimstering to an individual a nucleic acid molecule comprising an immunomodulatory nucleic acid molecule in an amount sufficient to reduce the risk of anaphylactic shock, wherein the immunomodulatory nucleic acid molecule comprises a sequence selected from the group consisting of 5'-purine-purine-C-G-pyrinήdine-pyrimidine, 5'-purine-T-C-G-pyrimidine- pyrimidine-3', and 5'-(TCG)n-3', wherein n is any integer that is 1 or greater.
0. A method for reducing a symptom associated with anaphylactic hypersensitivity in a subject comprising administering to an individual a nucleic acid molecule comprising an immunomodulatory nucleic acid molecule in an amount sufficient to reduce at least one anaphylaxis-associated symptom, wherein the immunomodulatory nucleic acid molecule comprises a sequence selected from the group consisting of 5'-purine-purine-C-G-pyrirrudine- pyrimidine, 5'-puτine-T-C-G-pyrinιidine-pyrinιidine-3', and 5'-(TCG)n-3', wherein n is any integer that is 1 or greater.
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Cited By (16)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2007028047A3 (en) * 2005-09-01 2007-06-14 Celgene Corp Immunological uses of immunodulatory compounds for vaccine and anti-infections disease therapy
EP1992635A1 (en) 2002-12-23 2008-11-19 Dynavax Technologies Corporation Immunostimulatory sequence oligonucleotides and methods of using the same
US7662949B2 (en) 2005-11-25 2010-02-16 Coley Pharmaceutical Gmbh Immunostimulatory oligoribonucleotides
US7723500B2 (en) 1994-07-15 2010-05-25 University Of Iowa Research Foundation Immunostimulatory nucleic acid molecules
US7776343B1 (en) 1999-02-17 2010-08-17 Csl Limited Immunogenic complexes and methods relating thereto
US7807803B2 (en) 2002-07-03 2010-10-05 Coley Pharmaceutical Group, Inc. Nucleic acid compositions for stimulating immune responses
US7935675B1 (en) 1994-07-15 2011-05-03 University Of Iowa Research Foundation Immunostimulatory nucleic acid molecules
US7998492B2 (en) 2002-10-29 2011-08-16 Coley Pharmaceutical Group, Inc. Methods and products related to treatment and prevention of hepatitis C virus infection
US8114419B2 (en) 2002-07-03 2012-02-14 Coley Pharmaceutical Group, Inc. Nucleic acid compositions for stimulating immune responses
US8574599B1 (en) 1998-05-22 2013-11-05 Ottawa Hospital Research Institute Methods and products for inducing mucosal immunity
US8580268B2 (en) 2006-09-27 2013-11-12 Coley Pharmaceutical Gmbh CpG oligonucleotide analogs containing hydrophobic T analogs with enhanced immunostimulatory activity
US8586555B2 (en) 2001-08-07 2013-11-19 Dynavax Technologies Corporation Immunomodulatory compositions, formulations, and methods for use thereof
US8834900B2 (en) 2001-08-17 2014-09-16 University Of Iowa Research Foundation Combination motif immune stimulatory oligonucleotides with improved activity
US8871732B2 (en) 2002-12-23 2014-10-28 Dynavax Technologies Corporation Immunostimulatory sequence oligonucleotides and methods of using the same
US9028845B2 (en) 2001-06-21 2015-05-12 Dynavax Technologies Corporation Chimeric immunomodulatory compounds and methods of using the same-IV
US9428536B2 (en) 2002-04-04 2016-08-30 Zoetis Belgium Sa Immunostimulatory G, U-containing oligoribonucleotides

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6194388B1 (en) * 1994-07-15 2001-02-27 The University Of Iowa Research Foundation Immunomodulatory oligonucleotides

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6194388B1 (en) * 1994-07-15 2001-02-27 The University Of Iowa Research Foundation Immunomodulatory oligonucleotides

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
SEREBRISKY ET AL.: "CpG oligodeoxynucleotides can reverse Th2-associated allergic airway responses", J. IMMUNOL., vol. 165, no. 10, November 2000 (2000-11-01), pages 5906 - 5912, XP002939668 *
SHIROTA: "Regulation of murine airway esosinophilia and Th2 cells by antigen-conjugated CpG oligodeoxynucleotides as a novel antigen-specific immunomodulator", J. IMMUNOL., vol. 164, no. 11, June 2000 (2000-06-01), pages 5575 - 5582, XP002939667 *

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US7879810B2 (en) 1994-07-15 2011-02-01 University Of Iowa Research Foundation Immunostimulatory nucleic acid molecules
US8258106B2 (en) 1994-07-15 2012-09-04 University Of Iowa Research Foundation Immunostimulatory nucleic acid molecules
US7723500B2 (en) 1994-07-15 2010-05-25 University Of Iowa Research Foundation Immunostimulatory nucleic acid molecules
US7935675B1 (en) 1994-07-15 2011-05-03 University Of Iowa Research Foundation Immunostimulatory nucleic acid molecules
US7888327B2 (en) 1994-07-15 2011-02-15 University Of Iowa Research Foundation Methods of using immunostimulatory nucleic acid molecules to treat allergic conditions
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