WO2001057775A3 - System and method for modelling genetic, biochemical, biophysical and anatomical information - Google Patents
System and method for modelling genetic, biochemical, biophysical and anatomical information Download PDFInfo
- Publication number
- WO2001057775A3 WO2001057775A3 PCT/US2001/001988 US0101988W WO0157775A3 WO 2001057775 A3 WO2001057775 A3 WO 2001057775A3 US 0101988 W US0101988 W US 0101988W WO 0157775 A3 WO0157775 A3 WO 0157775A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- genetic
- biochemical
- data structure
- information
- biophysical
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/20—Heterogeneous data integration
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
- Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation
Abstract
Priority Applications (5)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
IL15107001A IL151070A0 (en) | 2000-02-07 | 2001-01-22 | System and method for modeling genetic, biochemical, biophysical and anatomical information: in silico cell |
CA002399272A CA2399272A1 (en) | 2000-02-07 | 2001-01-22 | System and method for modeling genetic, biochemical, biophysical and anatomical information: in silico cell |
EP01908645A EP1368774A2 (en) | 2000-02-07 | 2001-01-22 | System and method for modelling genetic, biochemical, biophysical and anatomical information |
JP2001556956A JP2004501415A (en) | 2000-02-07 | 2001-01-22 | Genes, biochemistry, biophysics, and anatomical information systems and methods: insilico cells |
AU36490/01A AU3649001A (en) | 2000-02-07 | 2001-01-22 | System and method for modeling genetic, biochemical, biophysical and anatomical information: in silico cell |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US49957500A | 2000-02-07 | 2000-02-07 | |
US09/499,575 | 2000-02-07 |
Publications (3)
Publication Number | Publication Date |
---|---|
WO2001057775A2 WO2001057775A2 (en) | 2001-08-09 |
WO2001057775A3 true WO2001057775A3 (en) | 2003-10-02 |
WO2001057775A9 WO2001057775A9 (en) | 2003-11-27 |
Family
ID=23985791
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2001/001988 WO2001057775A2 (en) | 2000-02-07 | 2001-01-22 | System and method for modelling genetic, biochemical, biophysical and anatomical information |
Country Status (6)
Country | Link |
---|---|
EP (1) | EP1368774A2 (en) |
JP (1) | JP2004501415A (en) |
AU (1) | AU3649001A (en) |
CA (1) | CA2399272A1 (en) |
IL (1) | IL151070A0 (en) |
WO (1) | WO2001057775A2 (en) |
Families Citing this family (24)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP1147229A2 (en) | 1999-02-02 | 2001-10-24 | Bernhard O. Palsson | Methods for identifying drug targets based on genomic sequence data |
EP1173814A2 (en) | 1999-04-16 | 2002-01-23 | Entelos, Inc. | Method and apparatus for conducting linked simulation operations utilizing a computer-based system model |
US7127379B2 (en) | 2001-01-31 | 2006-10-24 | The Regents Of The University Of California | Method for the evolutionary design of biochemical reaction networks |
US7353152B2 (en) | 2001-05-02 | 2008-04-01 | Entelos, Inc. | Method and apparatus for computer modeling diabetes |
JP2004533053A (en) | 2001-05-17 | 2004-10-28 | エンテロス,インコーポレイティド | Apparatus and method for validating a computer model |
US6862561B2 (en) | 2001-05-29 | 2005-03-01 | Entelos, Inc. | Method and apparatus for computer modeling a joint |
US7751981B2 (en) | 2001-10-26 | 2010-07-06 | The Regents Of The University Of California | Articles of manufacture and methods for modeling Saccharomyces cerevisiae metabolism |
US20030224363A1 (en) * | 2002-03-19 | 2003-12-04 | Park Sung M. | Compositions and methods for modeling bacillus subtilis metabolism |
US8229673B2 (en) | 2002-03-29 | 2012-07-24 | Genomatica, Inc. | Human metabolic models and methods |
US8949032B2 (en) | 2002-03-29 | 2015-02-03 | Genomatica, Inc. | Multicellular metabolic models and methods |
US20030220928A1 (en) * | 2002-05-21 | 2003-11-27 | Patrick Durand | Method for organizing and querying a genomic and proteomic databases |
US7856317B2 (en) | 2002-06-14 | 2010-12-21 | Genomatica, Inc. | Systems and methods for constructing genomic-based phenotypic models |
AU2003222214B2 (en) | 2002-10-15 | 2010-08-12 | The Regents Of The University Of California | Methods and systems to identify operational reaction pathways |
US7869957B2 (en) | 2002-10-15 | 2011-01-11 | The Regents Of The University Of California | Methods and systems to identify operational reaction pathways |
FR2854709B1 (en) * | 2003-05-07 | 2005-08-05 | Gilbert Chauvet | SYSTEM AND METHOD FOR SIMULATION OF EVOLUTION OF COMPLEX LIVING ORGANISMS |
US7853406B2 (en) | 2003-06-13 | 2010-12-14 | Entelos, Inc. | Predictive toxicology for biological systems |
ATE531310T1 (en) | 2003-11-19 | 2011-11-15 | Entelos Inc | METHOD FOR ASSESSING METABOLIC SUBSTRATE USE AND THE EFFECTIVENESS OF A THERAPY |
US7069534B2 (en) | 2003-12-17 | 2006-06-27 | Sahouria Emile Y | Mask creation with hierarchy management using cover cells |
US8554486B2 (en) | 2004-02-20 | 2013-10-08 | The Mathworks, Inc. | Method, computer program product, and apparatus for selective memory restoration of a simulation |
US7844431B2 (en) | 2004-02-20 | 2010-11-30 | The Mathworks, Inc. | Method and apparatus for integrated modeling, simulation and analysis of chemical and biochemical reactions |
US10325686B2 (en) * | 2012-07-05 | 2019-06-18 | Siemens Healthcare Gmbh | System and methods for integrated and predictive analysis of molecular, imaging, and clinical data for patient-specific management of diseases |
EP3283989A4 (en) * | 2015-02-04 | 2018-12-19 | Rath, Matthias W. | Method and system for real time visualization of individual health condition on a mobile device |
CA3065862C (en) | 2018-01-05 | 2023-08-22 | Illumina, Inc. | Predicting reagent chiller instability and flow cell heater failure in sequencing systems |
US11288576B2 (en) | 2018-01-05 | 2022-03-29 | Illumina, Inc. | Predicting quality of sequencing results using deep neural networks |
Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5273038A (en) * | 1990-07-09 | 1993-12-28 | Beavin William C | Computer simulation of live organ |
US5914891A (en) * | 1995-01-20 | 1999-06-22 | Board Of Trustees, The Leland Stanford Junior University | System and method for simulating operation of biochemical systems |
US5930154A (en) * | 1995-01-17 | 1999-07-27 | Intertech Ventures, Ltd. | Computer-based system and methods for information storage, modeling and simulation of complex systems organized in discrete compartments in time and space |
US5947899A (en) * | 1996-08-23 | 1999-09-07 | Physiome Sciences | Computational system and method for modeling the heart |
-
2001
- 2001-01-22 IL IL15107001A patent/IL151070A0/en unknown
- 2001-01-22 AU AU36490/01A patent/AU3649001A/en not_active Abandoned
- 2001-01-22 JP JP2001556956A patent/JP2004501415A/en active Pending
- 2001-01-22 EP EP01908645A patent/EP1368774A2/en not_active Withdrawn
- 2001-01-22 CA CA002399272A patent/CA2399272A1/en not_active Abandoned
- 2001-01-22 WO PCT/US2001/001988 patent/WO2001057775A2/en not_active Application Discontinuation
Patent Citations (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5273038A (en) * | 1990-07-09 | 1993-12-28 | Beavin William C | Computer simulation of live organ |
US5930154A (en) * | 1995-01-17 | 1999-07-27 | Intertech Ventures, Ltd. | Computer-based system and methods for information storage, modeling and simulation of complex systems organized in discrete compartments in time and space |
US5914891A (en) * | 1995-01-20 | 1999-06-22 | Board Of Trustees, The Leland Stanford Junior University | System and method for simulating operation of biochemical systems |
US5947899A (en) * | 1996-08-23 | 1999-09-07 | Physiome Sciences | Computational system and method for modeling the heart |
Non-Patent Citations (4)
Title |
---|
DAFOE M E ET AL: "IN SILICO KNOWLEDGE DISCOVERY IN BIOMEDICAL DATABASES", PROCEEDINGS OF THE SPIE, SPIE, BELLINGHAM, VA, US, 7 November 1993 (1993-11-07), pages 239 - 243, XP000197711 * |
GORYANIN I ET AL: "Mathematical simulation and analysis of cellular metabolism and regulation", BIOINFORMATICS, vol. 15, no. 9, September 1999 (1999-09-01), pages 749 - 758, XP002190906 * |
SCHAFF J ET AL: "THE VIRTUAL CELL", PROCEEDINGS OF THE PACIFIC SYMPOSIUM ON BIOCOMPUTING, XX, XX, 1999, pages 228 - 239, XP002942953 * |
TANDEITNIK P ET AL: "Modelling of biological neurons by artificial neural networks", ELECTRICAL AND ELECTRONICS ENGINEERS IN ISRAEL, 1996., NINETEENTH CONVENTION OF JERUSALEM, ISRAEL 5-6 NOV. 1996, NEW YORK, NY, USA,IEEE, US, 5 November 1996 (1996-11-05), pages 239 - 242, XP010211280, ISBN: 0-7803-3330-6 * |
Also Published As
Publication number | Publication date |
---|---|
EP1368774A2 (en) | 2003-12-10 |
WO2001057775A2 (en) | 2001-08-09 |
JP2004501415A (en) | 2004-01-15 |
AU3649001A (en) | 2001-08-14 |
WO2001057775A9 (en) | 2003-11-27 |
IL151070A0 (en) | 2003-04-10 |
CA2399272A1 (en) | 2001-08-09 |
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