WO2001073587A3 - Universal biomolecular data system - Google Patents

Universal biomolecular data system Download PDF

Info

Publication number
WO2001073587A3
WO2001073587A3 PCT/US2001/003038 US0103038W WO0173587A3 WO 2001073587 A3 WO2001073587 A3 WO 2001073587A3 US 0103038 W US0103038 W US 0103038W WO 0173587 A3 WO0173587 A3 WO 0173587A3
Authority
WO
WIPO (PCT)
Prior art keywords
databases
biomolecular data
biomolecular
management system
universal
Prior art date
Application number
PCT/US2001/003038
Other languages
French (fr)
Other versions
WO2001073587A2 (en
Inventor
Gareth Jones
Original Assignee
Arena Pharm Inc
Gareth Jones
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Arena Pharm Inc, Gareth Jones filed Critical Arena Pharm Inc
Priority to AU2001233134A priority Critical patent/AU2001233134A1/en
Publication of WO2001073587A2 publication Critical patent/WO2001073587A2/en
Publication of WO2001073587A3 publication Critical patent/WO2001073587A3/en

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/24—Querying
    • G06F16/245—Query processing
    • G06F16/2458—Special types of queries, e.g. statistical queries, fuzzy queries or distributed queries
    • G06F16/2471—Distributed queries
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/25—Integrating or interfacing systems involving database management systems
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16C—COMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
    • G16C20/00—Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
    • G16C20/40—Searching chemical structures or physicochemical data
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16C—COMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
    • G16C20/00—Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
    • G16C20/90—Programming languages; Computing architectures; Database systems; Data warehousing

Abstract

The present invention includes a database management system that interfaces with a plurality of databases storing biomolecular data. A request to access biomolecular data stored in at least one of a plurality of databases is received by the database management system from a user's computer. The database management system determines which of the plurality of databases store the biomolecular data. Instructions to access the biomolecular data in the at least one of the plurality of databases is generated and the information is accessed. The biomolecular data is received from the at least one of the plurality of databases. Then a web page display of the biomolecular data received from the at least one of the plurality of databases is generated and sent to the user's computer.
PCT/US2001/003038 2000-03-29 2001-01-30 Universal biomolecular data system WO2001073587A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2001233134A AU2001233134A1 (en) 2000-03-29 2001-01-30 Universal biomolecular data system

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US19306500P 2000-03-29 2000-03-29
US60/193,065 2000-03-29
US63583300A 2000-08-09 2000-08-09
US09/635,833 2000-08-09

Publications (2)

Publication Number Publication Date
WO2001073587A2 WO2001073587A2 (en) 2001-10-04
WO2001073587A3 true WO2001073587A3 (en) 2003-01-03

Family

ID=26888647

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2001/003038 WO2001073587A2 (en) 2000-03-29 2001-01-30 Universal biomolecular data system

Country Status (2)

Country Link
AU (1) AU2001233134A1 (en)
WO (1) WO2001073587A2 (en)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7428554B1 (en) 2000-05-23 2008-09-23 Ocimum Biosolutions, Inc. System and method for determining matching patterns within gene expression data
US7177878B2 (en) * 2004-04-13 2007-02-13 International Business Machines Corporation Simple persistence mechanism for server based web applications
JP5898774B2 (en) 2012-09-13 2016-04-06 株式会社ソニー・コンピュータエンタテインメント Force display device
WO2017041016A1 (en) * 2015-09-03 2017-03-09 Becton, Dickinson And Company Methods and systems for providing labelled biomolecules

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5577239A (en) * 1994-08-10 1996-11-19 Moore; Jeffrey Chemical structure storage, searching and retrieval system

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5577239A (en) * 1994-08-10 1996-11-19 Moore; Jeffrey Chemical structure storage, searching and retrieval system

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
DAVIDSON S B ET AL: "BIOKLEISLI: A DIGITAL LIBRARY FOR BIOMEDICAL RESEARCHERS", INTERNATIONAL JOURNAL ON DIGITAL LIBRARIES, HEIDELBERG, DE, vol. 1, no. 1, April 1997 (1997-04-01), pages 36 - 53, XP000904387, ISSN: 1432-5012 *
KERLAVAGE A R ET AL: "DATA MANAGEMENT AND ANALYSIS FOR HIGH-THROUGHPUT DNA SEQUENCING PROJECTS", IEEE ENGINEERING IN MEDICINE AND BIOLOGY MAGAZINE, IEEE INC. NEW YORK, US, vol. 14, no. 6, 1 November 1995 (1995-11-01), pages 710 - 717, XP000598295, ISSN: 0739-5175 *
PATON N W ET AL: "Query processing in the TAMBIS bioinformatics source integration system", SCIENTIFIC AND STATISTICAL DATABASE MANAGEMENT, 1999. ELEVENTH INTERNATIONAL CONFERENCE ON CLEVELAND, OH, USA 28-30 JULY 1999, LOS ALAMITOS, CA, USA,IEEE COMPUT. SOC, US, 28 July 1999 (1999-07-28), pages 138 - 147, XP010348735, ISBN: 0-7695-0046-3 *
WANG CHIEW TAN ET AL: "QUICK: graphical user interface to multiple databases", DATABASE AND EXPERT SYSTEMS APPLICATIONS, 1996. PROCEEDINGS., SEVENTH INTERNATIONAL WORKSHOP ON ZURICH, SWITZERLAND 9-10 SEPT. 1996, LOS ALAMITOS, CA, USA,IEEE COMPUT. SOC, US, 9 September 1996 (1996-09-09), pages 404 - 409, XP010200903, ISBN: 0-8186-7662-0 *

Also Published As

Publication number Publication date
WO2001073587A2 (en) 2001-10-04
AU2001233134A1 (en) 2001-10-08

Similar Documents

Publication Publication Date Title
WO2003029923A3 (en) Computing system and method to implicity commit unsaved data for a world wide web application
WO2001080177A3 (en) Interactive intelligent searching with executable suggestions
WO2002007013A3 (en) Software agent for retrieval and storage of information from a network and method for the creation of instructions for the agent
WO2000062264A3 (en) Method and system for retrieving data from multiple data sources using a search routing database
CA2321112A1 (en) Information retrieval and speech recognition based on language models
CA2471398A1 (en) Method for gathering and summarizing internet information
WO1996021901A3 (en) User interface for full-text document retrieval
EP0824236A3 (en) Computer system
WO2001082031A3 (en) Portable internet services
WO2001059655A3 (en) System for automatically maintaining the accuracy and completeness of data contained in a computer based calendar and address book
AU2396095A (en) System for ranking the relevance of information objects accessed by computer users
MXPA05009733A (en) System and method to acquire information from a database.
WO2002003251A3 (en) Caching scheme for multi-dimensional data
CA2371549A1 (en) Data transfer server
EP2267618A3 (en) Method and system for forming a keyword database for referencing physical locations
WO2000077640A8 (en) Arrangements storing different versions of a set of data in separate memory areas and method for updating a set of data in a memory
CA2501501A1 (en) System and a method for presenting related items to a user
ATE161112T1 (en) DATA RECOVERY SYSTEM
WO2002037283A3 (en) Method and apparatus for providing computer-based help
WO2005010650A3 (en) Method and system for managing data transaction requests
WO2002052382A3 (en) Method and system for sharing investor information over an electronic network
CA2389375A1 (en) System and method for the storage and access of electronic data in a web-based computer system
WO2004077274A3 (en) Multi-tier business layer architecture for information systems
WO1995006286A3 (en) Integrated multi-threaded host adapter
WO2001073587A3 (en) Universal biomolecular data system

Legal Events

Date Code Title Description
AK Designated states

Kind code of ref document: A2

Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BY BZ CA CH CN CR CU CZ DE DK DM DZ EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT TZ UA UG US UZ VN YU ZA ZW

AL Designated countries for regional patents

Kind code of ref document: A2

Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE TR BF BJ CF CG CI CM GA GN GW ML MR NE SN TD TG

DFPE Request for preliminary examination filed prior to expiration of 19th month from priority date (pct application filed before 20040101)
121 Ep: the epo has been informed by wipo that ep was designated in this application
122 Ep: pct application non-entry in european phase
NENP Non-entry into the national phase

Ref country code: JP