WO2001075178A3 - Methods for identifying peptide aptamers capable of altering a cell phenotype - Google Patents

Methods for identifying peptide aptamers capable of altering a cell phenotype Download PDF

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Publication number
WO2001075178A3
WO2001075178A3 PCT/US2001/010953 US0110953W WO0175178A3 WO 2001075178 A3 WO2001075178 A3 WO 2001075178A3 US 0110953 W US0110953 W US 0110953W WO 0175178 A3 WO0175178 A3 WO 0175178A3
Authority
WO
WIPO (PCT)
Prior art keywords
cell phenotype
altering
methods
peptide aptamers
identifying peptide
Prior art date
Application number
PCT/US2001/010953
Other languages
French (fr)
Other versions
WO2001075178A2 (en
Inventor
John D Benson
Sylvie Magali Vincent
Bradley Bryan Brasher
Original Assignee
Enanta Pharm Inc
John D Benson
Sylvie Magali Vincent
Bradley Bryan Brasher
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Enanta Pharm Inc, John D Benson, Sylvie Magali Vincent, Bradley Bryan Brasher filed Critical Enanta Pharm Inc
Priority to AU2001289284A priority Critical patent/AU2001289284A1/en
Publication of WO2001075178A2 publication Critical patent/WO2001075178A2/en
Publication of WO2001075178A3 publication Critical patent/WO2001075178A3/en
Priority to US10/263,577 priority patent/US20030108532A1/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1079Screening libraries by altering the phenotype or phenotypic trait of the host
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries

Abstract

The invention provides methods and compositions for screening and identifying peptide aptamers that can modulate a cell phenotype and further, can be used for the treatment of a disease involving a misregulated cell phenotype, such as, for example, a cancer.
PCT/US2001/010953 2000-04-04 2001-04-04 Methods for identifying peptide aptamers capable of altering a cell phenotype WO2001075178A2 (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
AU2001289284A AU2001289284A1 (en) 2000-04-04 2001-04-04 Methods for identifying peptide aptamers capable of altering a cell phenotype
US10/263,577 US20030108532A1 (en) 2000-04-04 2002-10-03 Methods for identifying peptide aptamers capable of altering a cell phenotype

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US19472200P 2000-04-04 2000-04-04
US60/194,722 2000-04-04

Related Child Applications (1)

Application Number Title Priority Date Filing Date
US10/263,577 Continuation US20030108532A1 (en) 2000-04-04 2002-10-03 Methods for identifying peptide aptamers capable of altering a cell phenotype

Publications (2)

Publication Number Publication Date
WO2001075178A2 WO2001075178A2 (en) 2001-10-11
WO2001075178A3 true WO2001075178A3 (en) 2002-06-06

Family

ID=22718675

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2001/010953 WO2001075178A2 (en) 2000-04-04 2001-04-04 Methods for identifying peptide aptamers capable of altering a cell phenotype

Country Status (3)

Country Link
US (1) US20030108532A1 (en)
AU (1) AU2001289284A1 (en)
WO (1) WO2001075178A2 (en)

Families Citing this family (24)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7803765B2 (en) 1999-05-05 2010-09-28 Phylogica Limited Methods of constructing biodiverse gene fragment libraries and biological modulators isolated therefrom
US20030134329A1 (en) * 2001-10-09 2003-07-17 Thea Norman Cross-species bioactive peptides
AU2002361589A1 (en) * 2001-11-06 2003-05-19 Enanta Pharmaceuticals, Inc. Methods and compositions for identifying peptide aptamers capable of altering a cell phenotype
WO2004001044A1 (en) * 2002-06-21 2003-12-31 Sinogenomax Company Ltd. Randomised dna libraries and double-stranded rna libraries, use and method of production thereof
US20050052687A1 (en) * 2003-08-12 2005-03-10 Murata Kikai Kabushiki Kaisha Image processing device and communication terminal device
US20110218118A1 (en) * 2004-06-03 2011-09-08 Phylogica Limited Peptide modulators of cellular phenotype and bi-nucleic acid fragment library
US20110150885A1 (en) 2009-12-11 2011-06-23 Atyr Pharma, Inc. Aminoacyl trna synthetases for modulating hematopoiesis
EP2563380B1 (en) 2010-04-26 2018-05-30 aTyr Pharma, Inc. Innovative discovery of therapeutic, diagnostic, and antibody compositions related to protein fragments of cysteinyl-trna synthetase
US8993723B2 (en) 2010-04-28 2015-03-31 Atyr Pharma, Inc. Innovative discovery of therapeutic, diagnostic, and antibody compositions related to protein fragments of alanyl-tRNA synthetases
US9068177B2 (en) 2010-04-29 2015-06-30 Atyr Pharma, Inc Innovative discovery of therapeutic, diagnostic, and antibody compositions related to protein fragments of glutaminyl-tRNA synthetases
US8986680B2 (en) 2010-04-29 2015-03-24 Atyr Pharma, Inc. Innovative discovery of therapeutic, diagnostic, and antibody compositions related to protein fragments of Asparaginyl tRNA synthetases
AU2011248457B2 (en) 2010-04-29 2017-02-16 Pangu Biopharma Limited Innovative discovery of therapeutic, diagnostic, and antibody compositions related to protein fragments of valyl tRNA synthetases
EP2566515B1 (en) 2010-05-03 2017-08-02 aTyr Pharma, Inc. Innovative discovery of therapeutic, diagnostic, and antibody compositions related to protein fragments of arginyl-trna synthetases
US8981045B2 (en) 2010-05-03 2015-03-17 Atyr Pharma, Inc. Innovative discovery of therapeutic, diagnostic, and antibody compositions related to protein fragments of methionyl-tRNA synthetases
JP6008840B2 (en) 2010-05-03 2016-10-19 エータイアー ファーマ, インコーポレイテッド Innovative discovery of therapeutic, diagnostic and antibody compositions related to protein fragments of phenylalanyl αtRNA synthetase
CA2798139C (en) 2010-05-04 2019-09-24 Atyr Pharma, Inc. Innovative discovery of therapeutic, diagnostic, and antibody compositions related to protein fragments of p38 multi-trna synthetase complex
CA3090304A1 (en) 2010-05-13 2011-11-17 Sarepta Therapeutics, Inc. Antisense modulation of interleukins 17 and 23 signaling
EP2568996B1 (en) 2010-05-14 2017-10-04 aTyr Pharma, Inc. Therapeutic, diagnostic, and antibody compositions related to protein fragments of phenylalanyl-beta-trna synthetases
JP6116479B2 (en) 2010-07-12 2017-04-19 エータイアー ファーマ, インコーポレイテッド Innovative discovery of therapeutic, diagnostic and antibody compositions related to protein fragments of glycyl-tRNA synthetase
EP3311847A1 (en) 2012-02-16 2018-04-25 Atyr Pharma, Inc. Histidyl-trna synthetases for treating autoimmune and inflammatory diseases
ES2774549T3 (en) 2013-03-13 2020-07-21 Bioasis Technologies Inc Fragments of P97 and uses thereof
US20210355468A1 (en) 2020-05-18 2021-11-18 Bioasis Technologies, Inc. Compositions and methods for treating lewy body dementia
US20210393787A1 (en) 2020-06-17 2021-12-23 Bioasis Technologies, Inc. Compositions and methods for treating frontotemporal dementia
WO2024044770A1 (en) 2022-08-26 2024-02-29 Core Biotherapeutics, Inc. Oligonucleotides for the treatment of breast cancer

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1996038553A1 (en) * 1995-06-02 1996-12-05 M&E Biotech A/S A method for identification of biologically active peptides and nucleic acids
WO1999024617A1 (en) * 1997-11-06 1999-05-20 Ventana Genetics, Inc. Methods and compositions for peptide libraries displayed on light-emitting scaffolds
WO2000020574A2 (en) * 1998-10-08 2000-04-13 Rigel Pharmaceuticals, Inc. Fusions of scaffold proteins with random peptide libraries

Family Cites Families (16)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4528266A (en) * 1979-10-01 1985-07-09 George Pieczenik Method of inserting unique DNA sequences into DNA vectors
DE3588239T3 (en) * 1985-03-30 2007-03-08 Kauffman, Stuart A., Santa Fe A method for obtaining DNA, RNA, peptides, polypeptides or proteins by DMS recombinant methods
US5866363A (en) * 1985-08-28 1999-02-02 Pieczenik; George Method and means for sorting and identifying biological information
US4980281A (en) * 1988-02-10 1990-12-25 Housey Gerard M Method of screening for protein inhibitors and activators
US5688655A (en) * 1988-02-10 1997-11-18 Ict Pharmaceuticals, Inc. Method of screening for protein inhibitors and activators
US5136779A (en) * 1989-09-27 1992-08-11 Die Tech, Inc. Method of mounting lead frame on substrate
US5639595A (en) * 1990-05-01 1997-06-17 Isis Phamaceuticals, Inc. Identification of novel drugs and reagents
US5665550A (en) * 1990-10-19 1997-09-09 Board Of Trustees Of The University Of Illinois-Urbana Genes and genetic elements associated with sensitivity to chemotherapeutic drugs
US5217889A (en) * 1990-10-19 1993-06-08 Roninson Igor B Methods and applications for efficient genetic suppressor elements
US5753432A (en) * 1990-10-19 1998-05-19 Board Of Trustees Of The University Of Illinois Genes and genetic elements associated with control of neoplastic transformation in mammalian cells
US5830725A (en) * 1995-04-28 1998-11-03 The Board Of Trustees For The Leland Stanford Junior University Rapid, stable high-titre production of recombing retrovirus
US6455247B1 (en) * 1996-01-23 2002-09-24 Board Of Trustees Of The Leland Stanford Junior University Methods for screening for transdominant effector peptides and RNA molecules
US5998136A (en) * 1996-08-19 1999-12-07 Arcaris, Inc. Selection systems and methods for identifying genes and gene products involved in cell proliferation
US5955275A (en) * 1997-02-14 1999-09-21 Arcaris, Inc. Methods for identifying nucleic acid sequences encoding agents that affect cellular phenotypes
US6060240A (en) * 1996-12-13 2000-05-09 Arcaris, Inc. Methods for measuring relative amounts of nucleic acids in a complex mixture and retrieval of specific sequences therefrom
US6071691A (en) * 1998-04-27 2000-06-06 Oregon Health Science University Materials and methods for modulating differentiation

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1996038553A1 (en) * 1995-06-02 1996-12-05 M&E Biotech A/S A method for identification of biologically active peptides and nucleic acids
WO1999024617A1 (en) * 1997-11-06 1999-05-20 Ventana Genetics, Inc. Methods and compositions for peptide libraries displayed on light-emitting scaffolds
WO2000020574A2 (en) * 1998-10-08 2000-04-13 Rigel Pharmaceuticals, Inc. Fusions of scaffold proteins with random peptide libraries

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
BLUM JONATHAN H ET AL: "Isolation of peptide aptamers that inhibit intracellular processes.", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES, vol. 97, no. 5, 29 February 2000 (2000-02-29), Feb. 29, 2000, pages 2241 - 2246, XP002193741, ISSN: 0027-8424 *
CAPONIGRO GIORDANO ET AL: "Transdominant genetic analysis of a growth control pathway.", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES, vol. 95, no. 13, 23 June 1998 (1998-06-23), June 23, 1998, pages 7508 - 7513, XP002193743, ISSN: 0027-8424 *
GEYER C RONALD ET AL: ""Mutagenesis" by peptide aptamers identifies genetic network members and pathway connections.", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES, vol. 96, no. 15, 20 July 1999 (1999-07-20), July 20, 1999, pages 8567 - 8572, XP002193742, ISSN: 0027-8424 *
LADNER R C: "Constrained peptides as binding entities", TRENDS IN BIOTECHNOLOGY, ELSEVIER PUBLICATIONS, CAMBRIDGE, GB, vol. 13, no. 10, October 1995 (1995-10-01), pages 426 - 430, XP002135011, ISSN: 0167-7799 *

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Publication number Publication date
WO2001075178A2 (en) 2001-10-11
AU2001289284A1 (en) 2001-10-15
US20030108532A1 (en) 2003-06-12

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