WO2003030620A3 - Imaging microarrays - Google Patents
Imaging microarrays Download PDFInfo
- Publication number
- WO2003030620A3 WO2003030620A3 PCT/US2002/032523 US0232523W WO03030620A3 WO 2003030620 A3 WO2003030620 A3 WO 2003030620A3 US 0232523 W US0232523 W US 0232523W WO 03030620 A3 WO03030620 A3 WO 03030620A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- image
- correct
- statistical analysis
- single copy
- microarray
- Prior art date
Links
- 238000002493 microarray Methods 0.000 title abstract 3
- 238000003384 imaging method Methods 0.000 title 1
- 238000000034 method Methods 0.000 abstract 4
- 238000007619 statistical method Methods 0.000 abstract 2
Classifications
-
- G06T5/70—
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
- G06T7/00—Image analysis
- G06T7/0002—Inspection of images, e.g. flaw detection
- G06T7/0012—Biomedical image inspection
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
- G06T7/00—Image analysis
- G06T7/10—Segmentation; Edge detection
- G06T7/11—Region-based segmentation
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
- G06T7/00—Image analysis
- G06T7/10—Segmentation; Edge detection
- G06T7/143—Segmentation; Edge detection involving probabilistic approaches, e.g. Markov random field [MRF] modelling
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
- G06T2207/00—Indexing scheme for image analysis or image enhancement
- G06T2207/10—Image acquisition modality
- G06T2207/10056—Microscopic image
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
- G06T2207/00—Indexing scheme for image analysis or image enhancement
- G06T2207/10—Image acquisition modality
- G06T2207/10064—Fluorescence image
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
- G06T2207/00—Indexing scheme for image analysis or image enhancement
- G06T2207/30—Subject of image; Context of image processing
- G06T2207/30004—Biomedical image processing
- G06T2207/30072—Microarray; Biochip, DNA array; Well plate
Abstract
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
AU2002347872A AU2002347872A1 (en) | 2001-10-12 | 2002-10-11 | Imaging microarrays |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US32876001P | 2001-10-12 | 2001-10-12 | |
US60/328,760 | 2001-10-12 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2003030620A2 WO2003030620A2 (en) | 2003-04-17 |
WO2003030620A3 true WO2003030620A3 (en) | 2003-11-06 |
Family
ID=23282319
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2002/032523 WO2003030620A2 (en) | 2001-10-12 | 2002-10-11 | Imaging microarrays |
Country Status (3)
Country | Link |
---|---|
US (1) | US7636636B2 (en) |
AU (1) | AU2002347872A1 (en) |
WO (1) | WO2003030620A2 (en) |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US8934689B2 (en) | 2006-06-27 | 2015-01-13 | Affymetrix, Inc. | Feature intensity reconstruction of biological probe array |
US9445025B2 (en) | 2006-01-27 | 2016-09-13 | Affymetrix, Inc. | System, method, and product for imaging probe arrays with small feature sizes |
Families Citing this family (38)
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EP1300713A3 (en) * | 1995-11-30 | 2004-11-03 | Chromavision Medical Systems, Inc. | Method and apparatus for automated image analysis of biological specimens |
US6718053B1 (en) * | 1996-11-27 | 2004-04-06 | Chromavision Medical Systems, Inc. | Method and apparatus for automated image analysis of biological specimens |
US7062092B2 (en) | 2000-08-22 | 2006-06-13 | Affymetrix, Inc. | System, method, and computer software product for gain adjustment in biological microarray scanner |
US6829376B2 (en) * | 2000-10-24 | 2004-12-07 | Affymetrix, Inc. | Computer software system, method, and product for scanned image alignment |
US20020183936A1 (en) * | 2001-01-24 | 2002-12-05 | Affymetrix, Inc. | Method, system, and computer software for providing a genomic web portal |
JP4406195B2 (en) * | 2001-10-09 | 2010-01-27 | セイコーエプソン株式会社 | Output image adjustment of image data |
AU2002350131A1 (en) * | 2001-11-09 | 2003-05-26 | Gene Logic Inc. | System and method for storage and analysis of gene expression data |
AU2002361618A1 (en) | 2001-11-13 | 2003-05-26 | Chromavision Medical Systems, Inc. | A system for tracking biological samples |
JP3670260B2 (en) * | 2002-02-14 | 2005-07-13 | 日本碍子株式会社 | Probe reactive tip |
US7200254B2 (en) | 2002-02-14 | 2007-04-03 | Ngk Insulators, Ltd. | Probe reactive chip, sample analysis apparatus, and method thereof |
US20030220746A1 (en) * | 2002-05-21 | 2003-11-27 | Srinka Ghosh | Method and system for computing and applying a global, multi-channel background correction to a feature-based data set obtained from scanning a molecular array |
US7272252B2 (en) * | 2002-06-12 | 2007-09-18 | Clarient, Inc. | Automated system for combining bright field and fluorescent microscopy |
US20050037406A1 (en) * | 2002-06-12 | 2005-02-17 | De La Torre-Bueno Jose | Methods and apparatus for analysis of a biological specimen |
WO2004031885A2 (en) * | 2002-08-01 | 2004-04-15 | Gene Logic Inc. | Method and system for managing and querying gene expression data according to quality |
DE03808546T1 (en) | 2002-12-23 | 2006-01-26 | Agilent Technologies, Inc., Palo Alto | COMPARATIVE GENOMIC HYBRIDIZATION TESTS USING CHARACTERIZED IMMOBILIZED OLIGONUCLEOTIDES AND COMPOSITIONS FOR IMPLEMENTING THEM |
US20040202357A1 (en) * | 2003-04-11 | 2004-10-14 | Perz Cynthia B. | Silhouette image acquisition |
DE10322282A1 (en) * | 2003-05-16 | 2004-12-16 | Ogham Gmbh | Automated genotyping, useful e.g. for assessing risk of developing thrombosis, comprises hybridization to a microarray of probes and evaluation against a control standard to indicate target sequences that can not be evaluated |
US7653260B2 (en) | 2004-06-17 | 2010-01-26 | Carl Zeis MicroImaging GmbH | System and method of registering field of view |
US8582924B2 (en) * | 2004-06-30 | 2013-11-12 | Carl Zeiss Microimaging Gmbh | Data structure of an image storage and retrieval system |
US7858382B2 (en) * | 2005-05-27 | 2010-12-28 | Vidar Systems Corporation | Sensing apparatus having rotating optical assembly |
CA2610875A1 (en) * | 2005-06-06 | 2006-12-14 | Decision Biomarkers, Inc. | Assays based on liquid flow over arrays |
US20070031043A1 (en) * | 2005-08-02 | 2007-02-08 | Perz Cynthia B | System for and method of intelligently directed segmentation analysis for automated microscope systems |
US20070116376A1 (en) * | 2005-11-18 | 2007-05-24 | Kolterman James C | Image based correction for unwanted light signals in a specific region of interest |
US20070154923A1 (en) * | 2005-12-29 | 2007-07-05 | Affymetrix, Inc. | Method for Gridding and Quality Control of Polymer Arrays |
US8055098B2 (en) | 2006-01-27 | 2011-11-08 | Affymetrix, Inc. | System, method, and product for imaging probe arrays with small feature sizes |
US7528374B2 (en) * | 2006-03-03 | 2009-05-05 | Vidar Systems Corporation | Sensing apparatus having optical assembly that collimates emitted light for detection |
CN100451662C (en) * | 2007-03-30 | 2009-01-14 | 清华大学 | Polar coordinate converting process for estimating signal background |
CA2714600C (en) | 2008-02-29 | 2021-11-02 | Dako Denmark A/S | Systems and methods for tracking and providing workflow information |
KR101569835B1 (en) * | 2009-10-06 | 2015-11-17 | 삼성전자주식회사 | Method of correcting distortion of scanned image |
EP2876168B1 (en) | 2009-12-29 | 2018-05-30 | Cancer Genetics, Inc. | Microarray and method for diagnosis and prognosis of mature b-cell neoplasms |
JP5379044B2 (en) * | 2010-02-25 | 2013-12-25 | 株式会社日立ハイテクノロジーズ | Automatic analyzer |
US11094398B2 (en) | 2014-10-10 | 2021-08-17 | Life Technologies Corporation | Methods for calculating corrected amplicon coverages |
CN104504711A (en) * | 2014-12-29 | 2015-04-08 | 西安交通大学 | Vascular image processing method based on circular contour polarity |
CN105069818A (en) * | 2015-09-02 | 2015-11-18 | 泰山学院 | Image-analysis-based skin pore identification method |
CN107274349B (en) * | 2017-06-05 | 2021-03-09 | 新疆大学 | Method and device for determining inclination angle of fluorescence image of biochip |
KR102113166B1 (en) * | 2019-10-14 | 2020-05-20 | (주)큐엘 | System and method for manufacturing image glass |
CN111968189A (en) * | 2020-08-27 | 2020-11-20 | 常州钛电科技有限公司 | System and method for detecting feature points of visual odometer based on deep learning |
CN114161713A (en) * | 2021-10-26 | 2022-03-11 | 深圳市纵维立方科技有限公司 | Printing head, detection method, storage medium and three-dimensional printer |
Citations (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US4926251A (en) * | 1987-04-07 | 1990-05-15 | Kabushiki Kaisha Toshiba | Color image processing apparatus with image corrector |
US5127063A (en) * | 1988-09-22 | 1992-06-30 | Hitachi, Ltd. | Processor for pattern data, measured process information, and image information |
US5155558A (en) * | 1990-09-19 | 1992-10-13 | E. I. Du Pont De Nemours And Company | Method and apparatus for analyzing the appearance features of a surface |
US5291563A (en) * | 1990-12-17 | 1994-03-01 | Nippon Telegraph And Telephone Corporation | Method and apparatus for detection of target object with improved robustness |
US5638460A (en) * | 1989-12-29 | 1997-06-10 | Canon Kabushiki Kaisha | Method of evaluating object based upon image processing and inspection apparatus using said method |
US5756696A (en) * | 1986-01-16 | 1998-05-26 | Regents Of The University Of California | Compositions for chromosome-specific staining |
Family Cites Families (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5491224A (en) * | 1990-09-20 | 1996-02-13 | Bittner; Michael L. | Direct label transaminated DNA probe compositions for chromosome identification and methods for their manufacture |
US5824478A (en) * | 1996-04-30 | 1998-10-20 | Vysis, Inc. | Diagnostic methods and probes |
US5804384A (en) * | 1996-12-06 | 1998-09-08 | Vysis, Inc. | Devices and methods for detecting multiple analytes in samples |
US5837466A (en) * | 1996-12-16 | 1998-11-17 | Vysis, Inc. | Devices and methods for detecting nucleic acid analytes in samples |
US6140653A (en) * | 1998-03-27 | 2000-10-31 | Vysis, Inc. | Large-field fluorescence imaging apparatus |
US6221592B1 (en) * | 1998-10-20 | 2001-04-24 | Wisconsin Alumi Research Foundation | Computer-based methods and systems for sequencing of individual nucleic acid molecules |
US6251601B1 (en) * | 1999-02-02 | 2001-06-26 | Vysis, Inc. | Simultaneous measurement of gene expression and genomic abnormalities using nucleic acid microarrays |
US7062091B2 (en) * | 2001-01-16 | 2006-06-13 | Applied Precision, Llc | Coordinate calibration for scanning systems |
-
2002
- 2002-10-11 WO PCT/US2002/032523 patent/WO2003030620A2/en not_active Application Discontinuation
- 2002-10-11 US US10/269,723 patent/US7636636B2/en not_active Expired - Fee Related
- 2002-10-11 AU AU2002347872A patent/AU2002347872A1/en not_active Abandoned
Patent Citations (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5756696A (en) * | 1986-01-16 | 1998-05-26 | Regents Of The University Of California | Compositions for chromosome-specific staining |
US4926251A (en) * | 1987-04-07 | 1990-05-15 | Kabushiki Kaisha Toshiba | Color image processing apparatus with image corrector |
US5127063A (en) * | 1988-09-22 | 1992-06-30 | Hitachi, Ltd. | Processor for pattern data, measured process information, and image information |
US5638460A (en) * | 1989-12-29 | 1997-06-10 | Canon Kabushiki Kaisha | Method of evaluating object based upon image processing and inspection apparatus using said method |
US5155558A (en) * | 1990-09-19 | 1992-10-13 | E. I. Du Pont De Nemours And Company | Method and apparatus for analyzing the appearance features of a surface |
US5291563A (en) * | 1990-12-17 | 1994-03-01 | Nippon Telegraph And Telephone Corporation | Method and apparatus for detection of target object with improved robustness |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US9445025B2 (en) | 2006-01-27 | 2016-09-13 | Affymetrix, Inc. | System, method, and product for imaging probe arrays with small feature sizes |
US8934689B2 (en) | 2006-06-27 | 2015-01-13 | Affymetrix, Inc. | Feature intensity reconstruction of biological probe array |
Also Published As
Publication number | Publication date |
---|---|
US7636636B2 (en) | 2009-12-22 |
AU2002347872A1 (en) | 2003-04-22 |
US20030124589A1 (en) | 2003-07-03 |
WO2003030620A2 (en) | 2003-04-17 |
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