WO2003033526A2 - Synthesis of cyclosporin analogs - Google Patents

Abstract

The invention is directed to isomeric mixtures of cyclosporine analogues that are structurally similar to cyclosporine A. The mixtures possess enhanced efficacy and reduced toxicity over the individual isomers and over naturally occurring and other presently known cyclosporines and cyclosporine derivatives. Embodiments of the present invention are directed toward cis and trans-isomers of cyclosporin A analogs referred to as ISATX247, and derivatives thereof. Mixtures of ISATX247 isomers exhibit a combination of enhanced potency and reduced toxicity over the naturally occurring and presently known cyclosporins. ISATX247 isomers and alkylated, arylated, and deuterated derivatives are synthesized by stereoselective pathways where the particular conditions of a reaction determine the degree of stereoselectivity. Stereoselective pathways may utilize a Wittig reaction, or an organometallic reagent comprising inorganic elements such as boron, silicon, titanium, and lithium. The ratio of isomers in a mixture may range from about 10 to 90 percent by weight of the (E)-isomer to about 90 to 10 percent by weight of the (Z)-isomer, based on the total weight of the mixture.

Description

SYNTHESIS OF CYCLOSPORIN ANALOGS

CROSS-REFERENCE TO RELATED APPLICATIONS

This application claims the benefit of U.S. Application Serial Nos. 60/346,201 filed October 19, 2001 and 60/370,596 filed April 5, 2002. The entire disclosure of each of these applications is incorporated herein by reference in its entirety.

FIELD OF THE INVENTION

The invention is directed to isomeric mixtures of cyclosporin analogues that are related to cyclosporine A. It is contemplated that the mixtures possess enhanced efficacy and/or reduced toxicity over the individual isomers and over naturally occurring and other presently known cyclosporines and cyclosporine derivatives. In addition, the present invention relates to synthetic pathways for producing isomers of cyclosporin A analogs, where such pathways vary in the degree of stereoselectivity depending on the specific reaction conditions.

References

The following references are related hereto or referred to herein by patent or application number or in parenthesis by author and year at the relevant portions of this specification:

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U.S. Pat. No. 4,108,985.

U.S. Pat. No. 4,160,452.

U.S. Pat. No. 4,210,581.

U.S. Pat. No. 4,220,641.

U.S. Pat. No. 4,256,108. U.S. Pat. No. 4,265,874.

U.S. Pat. No. 4,288,431.

U.S. Pat. No. 4,384,996.

U.S. Pat. No.4,396,542.

U.S. Pat. No.4,554,351.

U.S. Pat. No. 4,771,122.

U.S. Pat. No. 5,284,826.

U.S. Pat. No. 5,525,590.

European Patent Publication No. 0034567.

European Patent Publication No. 0056782.

International Patent Publication No. WO 86/02080.

International Patent Publication No. WO 99/18120.

The disclosure of each of the above-referenced patents, patent applications and publications is incorporated herein by reference in its entirety. BACKGROUND OF THE INVENTION

Cyclosporine derivatives compose a class of cyclic polypeptides, consisting of eleven amino acids, that are produced as secondary metabolites by the fungus species Tolypocladium inflatum Gams. They have been observed to reversibly inhibit immunocompetent lymphocytes, particularly T-lymphocytes, in the Go or Gi phase of the cell cycle. Cyclosporine derivatives have also been observed to reversibly inhibit the production and release of lymphokines (Granelli-Piperno et al, 1986). Although a number of cyclosporine derivatives are known, cyclosporine A is the most widely used. The suppressive effects of cyclosporine A are related to the inhibition of T-cell mediated activation events. This suppression is accomplished by the binding of cyclosporine to the ubiquitous intracellular protein, cyclophilin. This complex, in turn, inhibits the calcium- and calmodulin-dependent serine-threonine phosphatase activity of the enzyme calcineurin. Inhibition of calcineurin prevents the activation of transcription factors such as NFAT_P/C and NF-κB, which are necessary for the induction of the cytokine genes (IL-2, IFN-γ, IL-4, and GM-CSF) during T- cell activation. Cyclosporine also inhibits lymphokine production by T-helper cells in vitro and arrests the development of mature CD8 and CD4 cells in the thymus (Granelli-Piperno et al., 1986). Other in vitro properties of cyclosporine include the inhibition of IL-2 producing T-lymphocytes and cytotoxic T-lymphocytes, inhibition of IL-2 released by activated T-cells, inhibition of resting T-lymphocytes in response to alloantigen and exogenous lymphokine, inhibition of IL-1 production, and inhibition of mitogen activation of IL-2 producing T- lymphocytes (Granelli-Piperno et al, 1986).

Cyclosporine is a potent immunosuppressive agent that has been demonstrated to suppress humoral immunity and cell-mediated immune reactions such as allograft rejection, delayed hypersensitivity, experimental allergic encephalomyelitis , Freund's adjuvant arthritis and graft vs. host disease. It is used for the prophylaxis of organ rejection subsequent to organ transplantation; for treatment of rheumatoid arthritis; for the treatment of psoriasis; and for the treatment of other autoimmune diseases, including type I diabetes, Crohn's disease, lupus, and the like.

Since the original discovery of cyclosporin, a wide variety of naturally occurring cyclosporins have been isolated and identified and many further non-natural cyclosporins have been prepared by total- or semi-synthetic means or by the application of modified culture techniques. The class comprised by the cyclosporins is thus now substantial and includes, for example, the naturally occurring cyclosporins A through Z [c.f. Traber et al. (1977); Traber et al. (1982); Kobel et al. (1982); and von Wartburg et al. (1986)], as well as various non-natural cyclosporin derivatives and artificial or synthetic cyclosporins including the dihydro- and iso-cyclosporins; derivatized cyclosporins (e.g., in which the 3'-0-atom of the -MeBmt- residue is acylated or a further substituent is introduced at the α-carbon atom of the sarcosyl residue at the 3-position); cyclosporins in which the -MeBmt-residue is present in isomeric form (e.g., in which the configuration across positions 6' and 7' of the -MeBmt- residue is cis rather than trans); and cyclosporins wherein variant amino acids are incorporated at specific positions within the peptide sequence employing, e.g., the total synthetic method for the production of cyclosporins developed by R. Wenger~see e.g. Traber et al. (1977), Traber et al. (1982) and Kobel et al. (1982); U.S. Pat. Nos. 4,108,985, 4,210,581, 4,220,641, 4,288,431, 4,554,351 and 4,396,542; European Patent Publications Nos. 0034567 and 0056 782; International Patent Publication No. WO 86/02080; Wenger (1983); Wenger (1985); and Wenger (1986). Cyclosporin A analogues containing modified amino acids in the 1-position are reported by Rich et al. (1986). Immunosuppressive, anti-inflammatory, and anti-parasitic cyclosporin A analogues are described in U.S. Pat. Nos. 4,384,996; 4,771,122; 5,284,826; and 5,525,590, all assigned to Sandoz. Additional cyclosporin analogues are disclosed in WO 99/18120, assigned to Isotechnika. The terms Ciclosporin, ciclosporin, cyclosporine, and Cyclosporine are interchangeable and refer to cyclosporin.

There are numerous adverse effects associated with cyclosporine A therapy, including nephrotoxicity, hepatotoxicity, cataractogenesis, hirsutism, parathesis, and gingival hyperplasia to name a few (Sketris et al., 1995). Of these, nephrotoxicity is one of the more serious, dose-related adverse effects resulting from cyclosporine A administration. Immediate-release cyclosporine A drug products (e.g., Neoral^® and Sandimmune^®) can cause nephrotoxicities and other toxic side effects due to their rapid release and the absorption of high blood concentrations of the drug. It is postulated that the peak concentrations of the drug are associated with the side effects (Bennett, 1998). The exact mechanism by which cyclosporine A causes renal injury is not known; however, it is proposed that an increase in the levels of vasoconstrictive substances in the kidney leads to the vasoconstriction of the afferent glomerular arterioles. This can result in renal ischemia, a decrease in glomerular filtration rate and, over the long term, interstitial fibrosis. When the dose is reduced or another immunosuppressive agent is substituted, renal function improves (Valantine and Schroeder, 1995).

Accordingly, there is a need for immunosuppressive agents which are effective and have reduced toxicity.

Cyclosporin analogs containing modified amino acids in the 1 -position are disclosed in WO 99/18120, which is assigned to the assignee of the present application, and incorporated herein in its entirety. Also assigned to the present assignee is U.S. Provisional Patent Application No. 60/346,201, in which applicants disclosed a particularly preferred cyclosporin A analog referred to as "ISA χ247." This analog is structurally identical to cyclosporin A except for modification at the 1 -amino acid residue. Applicants discovered that certain mixtures of cis and trans isomers of ISAχχ247 exhibited a combination of enhanced potency, and/or reduced toxicity over the naturally occurring and presently known cyclosporins. Certain alkylated, arylated, and deuterated derivatives of ISAχχ247 were also disclosed.

Typically, the disclosed mixtures in U.S. Provisional Patent Application No. 60/346,201 range from about 10 to 90 percent by weight of the trαn_y-isomer and about 90 to 10 percent by weight of the czs-isomer; in another embodiment, the mixture contains about 15 to 85 percent by weight of the trørø-isomer and about 85 to 15 percent of the cώ-isomer; in another embodiment, the mixture contains about 25 to 75 percent by weight of the trans- isomer and about 75 to 25 percent by weight of the cz^'s-isomer; in another embodiment, the mixture contains about 35 to 65 percent by weight of the trαn_s-isomer and about 65 to 35 percent by weight of the cz'_$-isomer; in another embodiment, the mixture contains about 45 to 55 percent by weight of the trørø-isomer and about 55 to 45 percent of the -isomer. In another embodiment, the isomeric mixture is an ISAχχ247 mixture which comprises about 45 to 50 percent by weight of the trarø-isomer and about 50 to 55 percent by weight of the cis- isomer. These percentages by weight are based on the total weight of the composition. In other words, a mixture might contain 65 percent by weight of the (E)-isomer and 35 percent by weight of the (Z)-isomer, or vice versa. In an alternate nomenclature, the cώ-isomer may also be described as a (Z)-isomer, and the trαns-isomer could also be called an (E)-isomer.

Accordingly, there is a need in the art for methods of preparation of cyclosporin analogs, including isomers of ISAχχ247. Synthetic pathways are needed that produce enriched compositions of the individual isomers, as well mixtures of the isomers having a desired ratio of the two isomers. Methods of preparation of derivatives of ISAτχ247 are needed as well.

SUMMARY OF THE INVENTION

Cyclosporine and its analogs are members of a class of cyclic polypeptides having potent immunosuppressant activity. Despite the advantages these drugs offer with respect to their immunosuppressive, anti-inflammatory, and anti-parasitic activities, there are numerous adverse effects associated with cyclosporine A therapy that include nephrotoxicity and hepatotoxicity. Accordingly, there is a need for new immunosuppressive agents that are as pharmacologically active as the naturally occurring compound cyclosporin A, but without the associated toxic side effects.

Embodiments of the present invention provide certain mixtures of cis and trans- isomers of cyclosporin A analogs, which are pharmaceutically useful. A preferred analog is referred to as ISAχχ247. Mixtures of ISA χ247 isomers exhibit a combination of enhanced potency and reduced toxicity over the naturally occurring and presently known cyclosporins.

The present invention is based in part on the discovery that certain isomeric mixtures of analogues of cyclosporine provide superior immunosuppressive effects without the adverse effects associated with cyclosporine A. In particular, we have unexpectedly found that isomeric mixtures (i.e., mixtures of both cis- and trans- isomers) ranging from about 10:90 to about 90:10 (trans- to cis-) of cyclosporine analogues modified at the 1-amino acid residue provide superior efficacy and safety. Examples of such analogues are disclosed in WO 99/18120, and include deuterated and non-deuterated compounds. In particular, mixtures in the range of about 45:55 to about 50:50 (trans- to cis-) and in the range of about 50% to about 55% trans- and about 45% to about 50% cis- are found to be particularly efficacious. Moreover, it has been demonstrated that these isomer mixtures exhibit a combination of superior potency and reduced toxicity over naturally occurring and other presently known cyclosporines and cyclosporine derivatives.

A particularly preferred analogue (referred to herein as "ISAχχ247") is structurally similar to cyclosporine A except for a modified functional group on the periphery of the molecule, at the 1-amino acid residue. The structure of this particular isomeric analogue mixture compared to the structure of cyclosporine A is shown in HGS. 1A, IB, 2A, 2B.

The isomeric mixtures can be used, among other things, for immunosuppression, and the care of various immune disorders, diseases and conditions, including the prevention, control, alleviation and treatment thereof.

According to embodiments of the present invention, IS Aχχ247 isomers (and derivatives thereof) are synthesized by stereoselective pathways that may vary in their degree of selectivity. Stereoselective pathways produce compositions that are enriched in either of the (E) and (Z)-isomers, and these compositions may be combined such that the resulting mixture has a desired ratio of the two isomers. Alternatively, the reactions conditions of a stereoselective pathway may be tailored to produce the desired ratio directly in a prepared mixture. The percentage of one isomer or another in a mixture can be verified using nuclear magnetic resonance spectroscopy (NMR) or other techniques well known in the art.

Each of the pathways typically proceeds with the application of a protecting group to a sensitive alcohol functional group. In one embodiment the alcohol is protected as an acetate; in other embodiments the protecting groups are benzoate esters or silyl ethers. Although acetate protecting groups are common in the art, it is important to emphasize that in many of the exemplary embodiments described herein certain undesirable side-reactions involving an acetate protecting group may be avoided through the use of protecting groups such as benzoate esters or silyl ethers.

The protected compound may then serve as a precursor for a variety of stereoselective synthetic pathways including some that utilize phosphorus-containing reagents as participants in a Wittig reaction, and inorganic elements as members of organometallic reagents. The latter type may proceed through six-membered ring transition states where steric hindrance dictates the configurational outcome. Many organometallic reagents are available, including those that feature inorganic elements such as boron, silicon, titanium, lithium, and sulfur. Individual isomers may be prepared from single or multiple precursors.

The ratio of the (E) to (Z)-isomers in any mixture, whether produced stereoselectively or non-stereoselectively, may take on a broad range of values. For example, the mixture may comprise from about 10 to 90 percent of the (E)-isomer to about 90 to 10 percent of the (Z)- isomer. In other embodiments, the mixture may contain from about 15 to 85 percent by weight of the (E)-isomer and about 85 to 15 percent of the (Z)-isomer; in another embodiment, the mixture contains about 25 to 75 percent by weight of the (E)-isomer and about 75 to 25 percent by weight of the (Z)-isomer; in another embodiment, the mixture contains about 35 to 65 percent by weight of the (E)-isomer and about 65 to 35 percent by weight of the (Z)-isomer; in another embodiment, the mixture contains about 45 to 55 percent by weight of the (E)-isomer and about 55 to 45 percent of the (Z)-isomer. In another embodiment, the isomeric mixture is an ISAτχ247 mixture which comprises about 45 to 50 percent by weight of the (E)-isomer and about 50 to 55 percent by weight of the (Z)-isomer. These percentages by weight are based on the total weight of the composition, and it will be understood that the sum of the weight percent of the (E)-isomer and the (Z)-isomer is 100 weight percent. In other words, a mixture might contain 65 percent by weight of the (E)- isomer and 35 percent by weight of the (Z)-isomer, or vice versa.

Accordingly, in one aspect, the invention provides methods of preparing an isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the synthetic pathway comprises the steps of: heating an acetyl-η-halocyclosporin A with triakylphosphine, triarylphosphine (e.g. triphenylphosphme), arylalkylphosphine, and triarylarsine to produce an intermediate phosphonium halide of acetyl cyclosporin A; preparing a mixture of (E) and (Z)-isomers of acetyl- 1,3-diene by stirring the intermediate phosphonium halide of acetyl cyclosporin A with formaldehyde, optionally in the presence of a lithium halide; and preparing a mixture of (E) and (Z)-isomers of ISAχχ247 by treating the mixture of (E) and (Z)-isomers of acetyl- 1,3-diene with a base. In another aspect, the invention is directed to methods of preparing an isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the synthetic pathway comprises the steps of: converting an intermediate, e.g., protected trimethylsilyl (TMS) cyclosporin A aldehyde or acetyl cyclosporin A aldehyde to a mixture of (E) and (Z)- isomers of acetyl- 1,3-diene by reacting the intermediate with a phosphorus ylide via a Wittig reaction, optionally in the presence of a lithium halide; and preparing a mixture of (E) and (Z)-isomers of ISAχχ247 by treating the mixture of (E) and (Z)-isomers of acetyl-l,3-diene with a base in the case of acetyl-protecting group or, e.g., an acid in case of a TMS- protecting group.

In a further aspect, the invention is directed to methods of producing an E-isomer enriched mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the stereoselective synthesis of the E-isomer enriched material comprises the steps of: reacting an acetyl cyclosporin A aldehyde with a reagent selected from the group consisting of trialkylsilylallyl boronate ester and E-γ-(trialkylsilylallyl) dialkylborane to form a β- trialkylsilyl alcohol; treating the β-trialkylsilyl alcohol with acid to form acetyl-(E)-l,3-diene; and treating the acetyl-(E)-l,3-diene with base to form the (E)-isomer of ISAχχ247.

In yet a further aspect, the invention is directed to methods of producing a Z-isomer enriched mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the stereoselective synthesis of the Z-isomer enriched material comprises the steps of: reacting an acetyl cyclosporin A aldehyde with a reagent selected from the group consisting of trialkylsilylallyl boronate ester and (E-γ-trialkylsilylallyl) dialkylborane to form a β- trialkylsilyl alcohol; treating the β-trialkylsilyl alcohol with base to form acetyl-(Z)- 1,3- diene; and treating the acetyl-(Z)- 1,3-diene with base to form the (Z)-isomer of ISAχχ247.

In a still further aspect, the invention is directed to methods of producing an E-isomer enriched mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the stereoselective synthesis of the E-isomer enriched material comprises the steps of: reacting an acetyl cyclosporin A aldehyde with a lithiated allyldiphenylphosphine oxide to form acetyl-(E)-l,3-diene; and treating the acetyl-(E)- 1,3-diene with base to form the (E)-isomer of ISAτχ247. In yet a further still aspect, the invention provides method of producing a Z-isomer enriched mixture of cyclosporin A analogs modified at the 1-amina acid residue, wherein the stereoselective synthesis of the Z-isomer enriched material comprises the steps of: reacting an acetyl cyclosporin A aldehyde with [3-(diphenylphosphino)allyl] titanium to form a titanium-containing intermediate; allowing the titanium-containing intermediate to proceed to an erythro-α-adduct; converting the erythro-α-adduct to an β-oxidophosphonium salt by treatment of iodomethane; converting the β-oxidophosphonium salt to an acetyl-(Z)-l,3- diene; and treating the acetyl-(Z)- 1,3-diene with base to form the (Z)-isomer of ISAχχ247.

In still a further aspect, the invention provides mixtures (E) and (Z)-isomers prepared by a process comprising the steps of: protecting the β-alcohol of cyclosporin A to form acetyl cyclosporin A; brominating the η-carbon of the side chain of the 1-amino acid residue of acetyl cyclosproin A to produce a first intermediate acetyl-η-bromocyclosporin A; heating the first intermediate acetyl-η-bromocyclosporin A with a reagent selected from the group consisting of triphenyl phosphine and trialkyl phosphine to produce a second intermediate selected from the group consisting of triphenyl- and trialkyl phosphonium bromides of acetyl cyclosporin A; preparing a mixture of (E) and (Z)-isomers of acetyl-l,3-diene by stirring the ylide generated from the triphenyl- or trialkyl salt (second intermediate triphenylphosphonium bromide) of acetyl cyclosporin A with formaldehyde; and preparing the mixture of (E) and (Z)-isomers of ISAχχ247 by treating the mixture of (E) and (Z)- isomers of acetyl-l,3-diene with a base.

The invention is also directed to compositions of matter, including triphenyl- and trialkyl phosphonium bromides of acetyl cyclosporin A, the product prepared by a process comprising the steps of: protecting the β-alcohol of cyclosporin A; brominating the η-carbon of the side chain of the 1-amino acid residue of cyclosporin A to produce a first intermediate acetyl-η-bromocyclosporin A; and heating the first intermediate acetyl-η-bromocyclosporin A with a reagent selected from the group consisting of triphenylphosphme and trialkylphosphine to produce a bromide of acetyl cyclosporin A selected from the group consisting of the triphenyl- and trialkylphosphonium bromides of acetyl cyclosporin A. Also provided are compositions comprising a triphenyl or trialkyl phosphonium bromide derivative of acetyl cyclosporin A and compositions comprising a β-trimethylsilyl alcohol derivative of cyclosporin A.

In an additional aspect, the invention provides methods for the selective preparation of cyclosporin A aldehyde comprising the steps of: protecting the β-alcohol of cyclosporin A by forming acetyl cyclosporin A or trimethylsilyl (TMS) cyclosporin A; and oxidizing the acetyl cyclosporin A or TMS cyclosporin A with ozone as the oxidizing agent used with a reducing agent.

In another added aspect, the invention is directed to methods of preparing an isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the synthetic pathway comprises the steps of: converting an intermediate acetyl cyclosporin A aldehyde to a mixture of (E) and (Z)-isomers of acetyl-l,3-diene by reacting the intermediate with a phosphorus ylide prepared from a tributylallylphosphonium halogenide via a Wittig reaction, optionally in the presence of a lithium halide; and preparing a mixture of (E) and (Z)-isomers of ISAιχ247 by treating the mixture of (E) and (Z)-isomers of acetyl-l,3-diene with a base.

In an additional aspect, the invention provides methods for the stereoselective synthesis of the E-isomer of ISAχχ247 comprising the steps of: reacting a trimethylsilyl (TMS) cyclosporin A aldehyde with trialkylsilylallyl borane to form a β-trialkylsilyl alcohol; treating the β-trialkylsilyl alcohol to form directly the E-isomer of ISAχχ247.

Another aspect of the invention is directed to methods for the stereoselective synthesis of the Z-isomer of ISAχχ247 comprising the steps of: reacting a trimethylsilyl (TMS) cyclosporin A aldehyde with trialkylsilylallyl borane to form a β-trialkylsilyl alcohol; treating the β-trialkylsilyl alcohol with base to form TMS-(Z)-l,3-diene; and deprotecting the TMS- (Z)-l,3-diene to form the Z-isomer of ISAχ 247.

The invention is also directed to methods of preparing isomeric mixtures of cyclosporin A analogs modified at the 1-amino acid residue, the method comprising a synthetic pathway that prepares an (E)-isomer and a (Z)-isomer of ISAχχ247 such that the (E)-isomer and the (Z)-isomer are present in the mixture in a predetermined ratio, wherein the synthetic pathway comprises the steps of: protecting the β alcohol of cyclosporin A; oxidizing the protected cyclosporin A to produce a second intermediate protected cyclosporin A aldehyde; converting the second intermediate protected cyclosporin A aldehyde to a mixture of E- and Z- isomers of protected 1,3 diene by reacting the second intermediate with a phosphorus ylide via a Wittig reaction, optionally in the presence of a lithium halide; and preparing a mixture of E- and Z- isomers by deprotecting the protected 1,3 diene.

Other methods of preparing such mixtures also provided by the invention include methods of preparing an isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, the method comprising a synthetic pathway that prepares an (E)-isomer and a (Z)-isomer of ISAχχ247 such that the (E)-isomer and the (Z)-isomer are present in the mixture in a predetermined ratio, wherein the ratio of isomers in the mixture ranges from about 45 to 55 percent by weight of the (E)-isomer to about 55 to 45 percent by weight of the (Z)-isomer, based on the total weight of the mixture.

The invention also provides methods of preparing a predetermined isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, the method comprising: preparing a first material enriched in an (E)-isomer of ISAχχ247; preparing a second material enriched in a (Z)-isomer of ISAχχ247; and mixing the first and second materials in a ratio designed to give the desired isomeric composition.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1A shows the structure of cyclosporin A, illustrating the 11 amino acid residues that comprise the cyclic peptide ring of the molecule, as well as the structure of the side chain of the 1-amino acid residue;

FIG. IB is another illustration of the structure of cyclosporin A with particular emphasis on the definition of the term "CsA" as it is used in the present description; FIG. 2A shows the structure of the E-isomer (or trαras-isomer) of the cyclosporin A analog called ISA_Tχ247;

FIG. 2B shows the structure of the Z-isomer (or s-isomer) of the cyclosporin A analog ISAτχ247;

FIG. 3 shows an overview of exemplary synthetic pathways that may be used to prepare the cyclosporin analogs of the present invention, where stereoselective pathways are grouped according to reactive conditions;

FIG. 4 illustrates a synthetic pathway that produces a mixture of (E) and (Z)-isomers of ISAχχ247 from a bromine precursor;

FIG. 5 illustrates another synthetic pathway that produces a mixture of (E) and (Z)- isomers of ISAτχ247 from an aldehyde precursor;

FIG. 6 illustrates an exemplary stereoselective reaction scheme that may be used to prepare compositions enriched in either the (E) or (Z)-isomers of ISAτχ247, wherein either isomer may be prepared from the same precursor alcohol;

FIG. 7 illustrates an alternative reaction scheme for the stereoselective synthesis of a composition enriched in the (Z)-isomer of ISAχχ247;

FIG. 8 illustrates an alternative reaction scheme for the stereoselective synthesis of a composition enriched in the (E)-isomer of ISAτχ247;

FIGS. 9A-C illustrate exemplary synthetic pathways for producing a mixture of the (E) and (Z)-isomers of ISA_Tχ247, the conditions of each reaction having been tailored to produce a particular exemplary ratio of the two isomers; FIG. 10 illustrates exemplary stereoselective pathways for producing a mixture of the (E) and (Z)-isomers of ISAτχ247, where compositions enriched in one of the two isomers are first prepared, and then mixed accordingly in predetermined proportions to achieve the desired ratio;

FIG. 11 provides the results of an assay which shows that the inhibition of calcineurin phosphatase activity by ISAχχ247 (45-50% of E-isomer and 50-55% of Z-isomer) was up to a 3-fold more potent (as determined by IC₅₀) as compared to cyclosporine A.

FIG. 12 sets forth the structure and isomeric composition of some deuterated and non- deuterated analogue isomeric mixtures.

FIG. 13 provides the results of an assay which shows that the inhibition of calcineurin phosphatase activity by various deuterated and non-deuterated analogue isomeric mixtures was at least as potent (as determined by IC₅₀) as compared to cyclosporine A.

DETAILED DESCRIPTION OF THE INVENTION

Synthesis

Cyclosporin and its analogs are members of a class of cyclic polypeptides having potent immunosuppressive activity. Despite the advantages these drugs offer with respect to their immunosuppressive, anti-inflammatory, and anti-parasitic activities, there are numerous adverse effects associated with cyclosporine A therapy that include nephrotoxicity and hepatotoxicity. Accordingly, there is a need for new immunosuppressive agents that are as pharmacologically active as the naturally occurring compound cyclosporin A, but without the associated toxic side effects.

Applicants have previously disclosed a cyclosporin A analog referred to as "ISAχχ247." This analog is structurally similar to cyclosporin A except for modification at the 1-amino acid residue. Applicants discovered that certain mixtures of cis and trans- isomers of ISAχχ247 exhibited a combination of enhanced potency, and reduced toxicity, over the naturally occurring and presently known cyclosporins. According to embodiments of the present invention, ISAτχ247 isomers (and derivatives thereof) are synthesized by stereoselective pathways that may vary in their degree of stereoselectivity. Stereoselective pathways produce compositions that are enriched in either of the (E) and (Z)-isomers, and these compositions may be combined such that the resulting mixture has a desired ratio of the two isomers. Alternatively, the reaction conditions of a stereoselective pathway may be tailored to produce the desired ratio directly in a prepared mixture.

The chemical name of one immunosuppresive cyclosporin analog of the present invention, called ISAτχ247, is chemically described by the name cyclo{ {E,Z)-(2S,3R,4R)-3- hyoroxy-4-methyl-2-(methylamino)-6,8-nonadienoyl}-L-2-aminobutyryl-N-methyl-glycyl-N- methyl-L-Leucyl-L-valyl-N-methyl-L-leucyl-L-alanyl-D-alanyl-N-methyl-L-leucyl-N- methyl-L-leucyl-N-methyl-L-valyl}. Its empirical formula is C6₃HιπNπO₁₂, and it has a molecular weight of about 1214.85. The term "ISAχχ247" is a trade designation given to this pharmacologically active compound.

The structure of ISAχχ247 has been verified primarily through nuclear magnetic resonance (NMR) spectroscopy. Both the H and C spectra were assigned using a series of one and two dimensional NMR experiments, and by comparison to the known NMR assignments for cyclosporin A. The absolute assignment of the (E) and (Z)-isomers of ISAτχ247 was confirmed by Nuclear Overhauser Effect (NOE) experiments. Additional supporting evidence was provided by mass spectral analysis, which confirmed the molecular weight, and by the infrared spectrum, which was found to be very similar to cyclosporin A. The latter result was expected, given the similarity between the two compounds.

The structure of cyclosporin A is illustrated in FIG. 1 A. The structure includes identification of the 11 amino acid residues that comprise the cyclic peptide ring of the molecule. These 11 amino acid residues are labeled with numbers increasing in a clockwise direction, starting with the amino acid shown at the top center of the ring (and identified with reference label "1-amino acid"). The first amino acid is enclosed in a dashed box for clarity. The side chain of the 1-amino acid residue has been drawn out chemically since it is at this general location that the synthetic reactions described herein take place. Conventionally, the carbon adjacent to the carbonyl group of an amino acid is labeled as the α-carbon, with progressive letters in the Greek alphabet used to label adjacent carbons in a direction down the chain, away from the peptide ring. In the case of cyclosporin A, as shown in HG. 1 A, the β-carbon of the side chain is bonded to a hydroxyl group, and there is a trans-oriented double bond between the ε and ζ-carbons of the side chain.

Another schematic of the cyclosporin A structure is drawn in HG. IB, where a different portion of the molecule has been enclosed in a dashed box. This figure defines the nomenclature to be used in the present description, where the term "CsA" refers to the portion of the cyclosporin A enclosed in the box. The present nomenclature provides a shorthand means of displaying the region where the synthetic reactions described herein will take place (i.e., the side chain of the 1-amino acid residue, which has been drawn outside the dashed box in FIG. IB), without having to re-draw the remainder of the molecule each time a reaction is described. It will be obvious to those skilled in the art that the bond between the and β-carbons of the side chain is of normal length, and has been exaggerated only in this drawing to assist with the definition of the term "CsA."

As stated above, a particularly preferred cyclosporin A analog is called ISAτχ247, and its two stereoisomers E (or trans) and Z (or cis) are shown in HGS. 2A and 2B, respectively. The cis or trans nature of these stereoisomers refers to the configuration of the double bond between the ε and ζ-carbons of the side chain; i.e., the double bond nearer to the peptide ring, as opposed to the double bond at the terminal end of the chain.

A word should be said about stereochemical nomenclature. In the present description the terms cis and (Z) will be used interchangeably, and the terms trans and (E) will be used interchangeably. Usage of the terms "erythro" and "threo" will be kept to a minimum due to apparent confusion in the literature with regard to their meaning. See R.W. Hoffmann and H.-J Zei in "Stereoselective synthesis of Alcohols. 8. Diastereoselective Synthesis of β- Mefhylhomoallyl Alcohols via Crotylboronates," J. Org. Chem., Vol. 46, pp. 1309-1314 (1981); A. Streitwieser and C. H. Heathcock, Introduction to Organic Chemistry, 2^nd ed. (Macmillan, New York, 1981), pp. 845-846; and M.B. Smith and J. March, March's Advanced Organic Chemistry (Wiley, New York, 2001), pp. 144-147. In the few cases where threo/erythro terminology is employed herein the convention of Streitwieser and Heathcock is used, where "erythro" isomers refer to (R,S) and (S,R) configurations, and "threo" isomers refer to (R,R) and (S,S) configurations.

A final comment about nomenclature concerns the terminal carbon-carbon double bond shown in HGS. 2A and 2B. In an alternate numbering scheme, the carbons in the side chain of the 1-amino acid residue may be numbered starting with the terminal (θ) carbon, and working back toward the peptide ring. In this system the ISAχχ247 isomers may be thought of as 1,3-dienes according to conventional nomenclature in organic chemistry, where each double bond is identified by its lowest numbered carbon.

The synthetic pathways illustrated in HGS. 3-8 will now be discussed. According to embodiments of the present invention, isomeric mixtures may be prepared directly, wherein the reaction conditions of a particular synthetic pathway are tailored to achieve the desired ratio of isomers in the mixture. Alternatively, compositions may be prepared that are enriched in one of the two geometrical isomers of a cyclosporin A analog, and the compositions combined in a predefined ratio to achieve the desired mixture.

An overview of the synthetic pathways according to embodiments of the present invention is given in FIG. 3, where particular emphasis is given to grouping reaction paths according to chemistry and stereoselectivity. Referring to FIG. 3, synthetic pathways that utilize Wittig reactions are shown generally on the right-hand side of the diagram as indicated by reference numeral 31, while pathways 32 and 33 that utilize organometallic reagents that are thought to form six-membered ring transition states are shown in the middle and left-hand sides of the diagram. Any of the synthetic pathways may yield a mixture of the isomers, or they may produce compositions enriched in one of the two isomers.

Embodiments of the present invention provide a variety of ways to arrive at the desired mixture of isomers. The flexibility and versatility of the synthetic strategies disclosed herein may be reflected in part by the symmetries and asymmetries of HG. 3. A reaction that is common to each of the pathways is the protection of a functional group in cyclosporin A 34; in this exemplary embodiment that reaction is the conversion of cyclosporin A 34 to acetyl cyclosporin A 35. An asymmetry in FIG. 3 is the use of acetyl cyclosporin A aldehyde compound 51 as a precursor for all of the titanium and lithium organometallic reagent pathways, but only some of the phosphorus containing Wittig reaction pathways.

In general, synthetic pathways of FIG. 3 whose reaction conditions may be tuned to produce a mixture having the desired ratio of isomers utilize phosphorus-containing reagents as participants in a Wittig reaction. Other stereoselective pathways make use of inorganic elements as well, typically as members of organometallic reagents that proceed through six- membered ring transition states where steric hindrance dictates the configurational outcome. A plethora of organometallic reagents are useful to the present invention, including those that feature inorganic elements such as boron, silicon, titanium, lithium, and sulfur.

Compositions enriched in one or the other of a pair of isomers may be prepared from a single precursor; alternatively, the two compositions may be prepared from different precursors. In one of the stereoselective pathways of HG. 3 (pathway 32), a single precursor leads to both of the two isomers of ISAτχ247, depending on the reaction conditions that are chosen. In another of the stereoselective pathways (pathway 33), two different precursors are needed to produce each of the enriched compositions.

The reactions of FIG. 3 will now be discussed in detail. A reaction that is common to each of the pathways is the protection of the alcohol at the β-position of the side chain of the 1-amino acid residue. Such a protection scheme addresses a problem commonly encountered in organic synthesis, where a first functional group is inadvertently modified by a reaction intended for a second (similar and/or identical) functional group located elsewhere on the molecule. To carry out the scheme the first functional group is reacted with a protecting group, the desired reaction is carried out on the second functional group, and the protecting group is then removed from the first functional group.

Protecting groups are well known in organic synthesis, and have been discussed by J.R. Hanson in Chapter 2, "The Protection of Alcohols," of the publication Protecting Groups in Organic Synthesis (Sheffield Academic Press, Sheffield, England, 1999), pp. 24-25. Hanson teaches how to protect hydroxyl groups by converting them to either esters or ethers. Acetate esters are perhaps the most frequently used type of chemistry for protecting hydroxyl groups. There are a wide range of conditions that may be used to introduce the acetate group. These reagents and solvents include acetic anhydride and pyridine; acetic anhydride, pyridine and dimethylaminopyridine (DMAP); acetic anhydride and sodium acetate; acetic anhydride and toluene-p-sulfonic acid, acetyl chloride, pyridine and DMAP; and ketene. DMAP is a useful acylation catalyst because of the formation of a highly reactive N-acylpyridinium salt from the anhydride.

In one embodiment of the present invention, the β-alcohol of cyclosporin A 34 is protected as an acetate by reacting 34 with acetyl chloride, ethyl acetate, or combinations thereof, forming the compound acetyl cyclosporin A 35. In another embodiment, the β- alcohol undergoes a nucleophilic addition to acetic anhydride, forming acetyl cyclosporin A 35 and acetic acid. These reactions may be carried out in the presence of dimethylaminopyridine (DMAP) where an excess of acetic anhydride acts as the solvent. In these cases the prefix "acetyl" may be used in the nomenclature throughout the synthetic pathway, or until the acetyl group is removed. For example, the last intermediate in one pathway having an acetyl group at the β-carbon is called "acetyl-(E)-l,3~diene."

Although the preparation of acetyl cyclosporin A is well established in the literature, it will be appreciated by those skilled in the art that protecting groups other than acetate esters may be used to protect the β-alcohol of the 1-amino acid residue of cyclosporin A 34. These protecting groups may include benzoate esters, substituted benzoate esters, ethers, and silyl ethers. Under certain reaction conditions, the acetate protecting group is prone to undesirable side reactions such as elimination and hydrolysis. Since benzoate esters, ethers and silyl ethers are often more resistant to such side reactions under those same reaction conditions, it is often advantageous to employ such protecting groups in place of acetate. Cyclosporin or cyclosporin derivatives which have been protected by an acetyl group or any other protecting group are referred to as "protected-cyclosporin A." Likewise, the ultimate intermediate in the exemplary pathway referred to above would be called "protected-(E)-l,3-diene" instead of "acetyl-(E)-l,3-diene." The nature of the chosen protecting group may have an influence on the desired course of further steps in the reaction sequences. Referring to HG. 3, acetyl cyclosporin A 35 has in this exemplary pathway a protected β-alcohol, and this compound serves as a precursor for the synthesis of ISAτχ247 isomers in several of the synthetic pathways. Wittig reaction pathways will be discussed first.

Synthesis of mixtures of the (E) and (ZHsomers of ISATY247 via the Wittig Reaction

Wittig reaction pathways exemplified herein are identified by the reference numeral 31 in FIG. 3. Method 1 proceeds through the bromine intermediate acetyl-η- bromocyclosporin 41, whereas method 2 utilizes the acetyl cyclosporin A aldehyde 51 as a starting point. The exemplary methods described below utilize a Wittig reaction to introduce an alkene functionality with a mixture of stereochemical configurations.

The Wittig reactions used in the exemplary embodiments disclosed herein to synthesize mixtures of the (E) and (Z)-isomers of ISAχχ247 may optionally be carried out in the presence of a lithium halide. The presence of lithium halides in Wittig reactions is well known to have an effect on the ratio of geometrical isomers produced and, therefore, the addition of such a compound can aid in producing a desired mixture of the (E) and (Z)- isomers of ISA_Tχ247.

Method 1

In one embodiment of the present invention, a mixture of (E) and (Z)-isomers of ISAχχ247 is prepared as shown in FIG. 4. The use of the wavy-lined representation in HG. 4 (see especially compounds 43 and 44) is meant to denote that the exemplary reaction sequence produces a mixture of (E) and (Z)-isomers. In one embodiment the percentage ratio of the (E) to (Z)-isomers produced ranges from about 10 to 90 percent of the (E)-isomer to about 90 to 10 percent of the (Z)-isomer, but these ranges are only exemplary, and many other ranges are possible. For example, the mixture may contain from about 15 to 85 percent by weight of the (E)-isomer and about 85 to 15 percent of the (Z)-isomer. In other embodiments, the mixture contains about 25 to 75 percent by weight of the (E)-isomer and about 75 to 25 percent by weight of the (Z)-isomer; about 35 to 65 percent by weight of the (E)-isomer and about 65 to 35 percent by weight of the (Z)-isomer; and about 45 to 55 percent by weight of the (E)-isomer and about 55 to 45 percent of the (Z)-isomer. In still another embodiment, the isomeric mixture is an ISAτχ247 mixture which comprises about 45 to 50 percent by weight of the (E)-isomer and about 50 to 55 percent by weight of the (Z)- isomer. These percentages by weight are based on the total weight of the composition, and it will be understood that the sum of the weight percent of the (E) isomer and the (Z) isomer is 100 weight percent. In other words, a mixture might contain 65 percent by weight of the (E)~ isomer and 35 percent by weight of the (Z)-isomer, or vice versa.

Referring to FIG. 4, the terminal η-carbon of the side chain of the 1-amino acid residue of acetyl-cyclosporin A is brominated in the next step of the reaction by refluxing acetyl cyclosporin A 35 with N-bromosuccinimide and azo-bis-isobutyronitrile in a solvent such as carbon tetrachloride, producing the intermediate acetyl-η-bromocyclosporin A 41. N-bromosuccinimide is a reagent that is often used to replace allylic hydrogens with bromine, and it is believed to do so via a free radical mechanism. The preparation of the intermediate 41 was essentially described by M.K. Eberle and F. Nuninger in "Synthesis of the Main Metabolite (OL-17) of Cyclosporin A," /. Org. Chem., Vol. 57, pp. 2689-2691 (1992).

The novel intermediate triphenylphosphonium bromide of acetyl cyclosporin A 42 may be prepared from acetyl-η-bromocyclosporin A 41 by heating the latter compound with triphenylphosphme in a solvent such as toluene.

The novel intermediate 42, and others like it, are contemplated to be key intermediates in the synthesis of a plurality of cyclosporin A analogs that contain a conjugated diene system in the 1-amino acid residue. For example, in addition to triphenylphosphme, compounds such as triarylphosphines, trialkylphosphines, arylalkylphosphines, and triarylarsines may be reacted with acetyl-η-bromocyclosporin A 41 to prepare other activated compounds similar to 42.

Referring again to FIG. 4, a mixture of the (E) and (Z)-isomers of acetyl- 1,3-diene 43 may be prepared by stirring the triphenylphosphonium bromide of acetyl cyclosporin A 42 with an excess of formaldehyde in toluene at room temperature. Following addition of the formaldehyde, a base such as sodium hydroxide is added dropwise, and the isomeric mixture of dienes is extracted with ethyl acetate. Numerous organic chemistry textbooks describe the Wittig reaction. One description in particular is provided by J. McMurry, Organic Chemistiγ, 5^th Ed. (Brooks/Cole, Pacific Grove, 2000), pp. 780-783. A Wittig reaction may be used to convert a ketone or an aldehyde to an alkene. In such a process, a phosphorus ylide, also called a phosphorane, may be reacted with the aldehyde or ketone to give a dipolar intermediate called a betaine. Typically the betaine intermediate is not isolated; rather, it spontaneously decomposes through a four-membered ring to yield an alkene and triphenylphosphme oxide. The net result is a replacement of the carbonyl oxygen atom by the R C= group originally bonded to the phosphorus.

It will be appreciated by those skilled in the art that a wide variety of reagents may be substituted for the exemplary Wittig reaction reagents cited above. For example, numerous alkyl, aryl, aldehyde, and ketone compounds may be substituted for formaldehyde to prepare a vast number of cyclosporin derivatives. Applicants have carried out the above synthesis with formaldehyde, and in place of formaldehyde, compounds such as acetaldehyde, deuterated formaldehyde, deuterated acetaldehyde, 2-chlorobenzaldehyde, benzaldehyde, and butyraldehyde. Such Wittig reactions may be carried out with compounds other than triphenylphosphonium derivatives, such as triarylphosphines, trialkylphosphines, arylalkylphosphines and triarylarsines. Instead of using sodium hydroxide, various other bases such as sodium carbonate, butyllithium, hexyllithium, sodium amide, lithium hindered bases such as lithium diisopropylamide, and alkali metal alkoxides may be used. In addition to varying these reagents, the reaction may be conducted in various organic solvents or mixtures of organic solvents and water, in the presence of various salts, particularly lithium halides, and at varying temperatures. All of the factors listed above can reasonably be selected by one of ordinary skill in the art to have the desired effect on the stereochemistry of the formed double bond; i.e., the desired effect on the ratio of the cis to trαns-isomers. In one embodiment of the present invention, the Wittig reaction is carried out in a solvent selected from the group consisting of tetrahydrofuran and toluene, and wherein the solvent is used in the presence of a compound selected from the group comprised of butyllithium, sodium lower alkoxide, potassium lower alkoxide, and carbonate at a temperature between about -80°C and 110°C. The potassium lower oxide may be a potassium-tert-butoxide. Futhermore, the solvent may be tetrahydrofuran used in the pressence of potassium-tert-butoxide at a temperature between about -70°C and -100°C. In a final step of this synthesis, the protecting group on the β-carbon is removed using the following procedure. The mixture of acetyl-(E)- 1,3-diene and acetyl-(Z)- 1,3-diene 43 is dissolved in methanol, and then water is added. A base such as potassium carbonate is added, and the reaction mixture stirred at room temperature. Bases other than potassium carbonate that may be used include sodium hydroxide, sodium carbonate, sodium alkoxide, and potassium alkoxide. Ethyl acetate is then used to extract the final product mixture of (E) and (Z)-isomers of ISAχχ24744.

Method 2

In an alternative reaction pathway for synthesizing a mixture of (E) and (Z)-isomers of ISAτχ247 via a Wittig reaction strategy, a four step synthetic pathway may be employed as follows: 1) protection of the β-alcohol, as in method 1, 2) oxidation of the acetyl-cyclosporin A produced from the first step to produce an aldehyde; 3) a Wittig reaction; and 4) de- acetylation of the Wittig reaction product, or equivalently, hydrolysis of the acetate ester to retrieve the alcohol. This reaction sequence is illustrated in HG. 5.

This synthetic pathway begins in a manner similar to the Wittig reaction pathway of FIG. 4 in that the first step protects the β-alcohol with an acetate ester group. The two pathways differ from here on, however, in that the next step of method 2 converts acetyl- cyclosporin A 35 to an aldehyde, acetyl cyclosporin A aldehyde 51. This reaction uses an oxidizing agent sufficiently strong to cleave a C=C bond to produce two fragments. Alkene cleavage is known in the art. Ozone is perhaps the most commonly used double bond cleavage reagent, but other oxidizing reagents such as potassium permanganate (KMnO₄) or osmium tetroxide can cause double bond cleavage as well.

According to an embodiment of the present invention, acetyl-cyclosporin A is converted to an aldehyde with ozone as the oxidizing agent followed by work-up with a reducing agent to form acetyl cyclosporin A aldehyde. The ozonolysis step is carried out at a temperature range from about -80°C to 0°C. The solvent used during the ozonolysis may be a lower alcohol such as methanol. The reducing agent may be a triakylphosphine such as tributyl phosphine, a triarylphosphine, a trialkylamine such as triethylamine, an alkylaryl sulfide, a thiosulfate or a dialkylsulfide such as dimethylsulfide. When working with tributylphosphine as the reducing agent, the person of ordinary skill in the art will know that the reaction is dose-controlled.

According to another embodiment of the present invention, the β alcohol of cyclosporin A is protected with a trimethylsilyl (TMS) group and oxidized with ozone as the oxidizing agent followed by work-up with a reducing agent to form TMS cyclosporin A aldehyde. The ozonolysis step is carried out at a temperature range from about -80°C to 0°C. The solvent used during the ozonolysis may be a mixture of lower alcohol and dichloromethane. The reducing agent may be selected from the group consisting of triakylphosphines such as tributyl phosphine, triarylphosphines, trialkylamines such as triethylamine, alkylaryl sulfides, thiosulfates or dialkylsulfides such as dimethylsulfide. When working with tributylphosphine as the reducing agent, the person of ordinary skill in the art will know that the reaction is dose-controlled.

Additionally, the cyclosporin A aldehyde can be prepared by protecting the β- alcohol of cyclosporin A by forming acetyl cyclosporin A and then converting the acetyl cyclosporin A to the acetyl cyclosporin A epoxide with a monopersulfate, preferably oxone, in the presence of a ketone, such as acetoxyacetone or diacetoxyacetone. This step is performed in an organic solvent which is inert under these reaction conditions such as acetonitrile and water. Ethylenediamintetra-acetic acid disodium salt is added to capture any heavy metal ions which might be present. The epoxidation reaction is carried out preferably at a pH over 7. This epoxidation reaction is followed by oxidative cleavage of the epoxide with periodic acid or perodate salt under acidic conditions. Optionally, the oxidation and the oxidative cleavage can be combined in a work-up procedure. These reactions have been discussed by Dan Yang, et al., in "A C₂ Symmetric Chiral Ketone for Catalytic Asymmetric Epoxidation of Unfunctionalized Olefins," /. Am. Chem. Soc, Vol. 118, pp. 491-492 (1996), and "Novel Cyclic Ketones for Catalytic Oxidation Reactions," /. Org. Chem., Vol. 63, pp. 9888-9894 (1998).

The use of ruthenium based oxidizing agents has been discussed by H. J. Carlsen et al. in "A Greatly Improved Procedure for Ruthenium Tetroxide Catalyzed Oxidations of Organic Compounds," /. Org. Chem., Vol. 46, No. 19, pp 3736-3738 (1981). Carlsen et al. teach that, historically, the expense of ruthenium metal provided an incentive for the development of catalytic procedures, the most popular of which used periodate or hypochlorite as stoichiometric oxidants. These investigators found a loss of catalytic activity during the course of the reaction with the conventional use of ruthenium which they postulated to be due to the presence of carboxylic acids. The addition of nitriles to the reaction mixture, especially acetonitrile, was found to significantly enhance the rate and extent of the oxidative cleavage of alkenes in a CCI₄ H₂O/KV system.

According to one embodiment of the present invention, acetyl cyclosporin A aldehyde 51 may be produced from acetyl cyclosporin A 35 by dissolving it in a mixture of acetonitrile and water, and then adding first sodium periodate and then ruthenium chloride hydrate. The aldehyde 51 may be extracted with ethyl acetate. It should be noted that the synthesis of the aldehyde 51 by this oxidative cleavage strategy is important to many of the stereoselective pathways to be discussed below, and consequently the reader is referred back to this section accordingly.

Additionally, the cyclosporin A aldehyde can be prepared by protecting the β- alcohol of cyclosporin A by forming acetyl cyclosporin A and then converting the acetyl cyclosporin A to the acetyl cyclosporin A epoxide with a monopersulfate, preferably oxone, in the presence of a ketone, preferably an activated ketone, preferably acetoxyacetone or diacetoxyacetone. This step is performed in an organic solvent which is inert under these reaction conditions such as acetonitril and water. Ethylenediamintetra-acetic acid disodium salt is added to capture any heavy metal ions which might be present The epoxidation reaction is carried out preferably at a pH over 7. This epoxidation reaction is followed by oxidative cleavage of the epoxide with periodic acid or perodate salt under acidic conditions. The oxidation and the oxidative cleavage can be combined in a work-up procedure. These reactions have been discussed by Dan Yang, et al., in "A C₂ Symmetric Chiral Ketone for Catalytic Asymmetric Epoxidation of Unfunctionalized Olefins," J. Am. Chem. Soc, Vol. 118, pp. 491-492 (1996), and "Novel Cyclic Ketones for Catalytic Oxidation Reactions," J. Org. Chem., Vol. 63, pp. 9888-9894 (1998). The third step of method 2 involves converting the aldehyde 51 to a mixture of (E) and (Z) dienes via a Wittig reaction, in a similar fashion to that of method 1. As in method 1, a phosphorus ylide adds to the aldehyde to yield a betaine (which is not isolated), with the net result that the carbonyl oxygen atom of the aldehyde is replaced by the R₂C= group originally bonded to phosphorus. Again, such Wittig reactions may be carried out with phosphorus containing compounds other than triphenylphosphonium derivatives, such as triarylphosphines, trialkylphosphines, arylalkylphosphines and triarylarsines, at various temperatures, and using a variety of basic solutions and solvents or the addition of various inorganic salts may be used to influence the stereochemistry of the newly formed double bond.

In one embodiment, acetyl cyclosporin A aldehyde 51 is dissolved in toluene, to which is added a base such as sodium hydroxide in water. AUyl triphenylphosphonium bromide 52 is then added, and the reaction stirred for some time. Workup of the product mixture of acetyl (E) and (Z)-l,3-dienes 53 involves extraction with hexane and/or ethyl acetate, where the term "workup" is intended to mean the process of extracting and/or isolating reaction products from a mixture of reactants, products, solvent, etc.

In a final step of method 2, similar to the final step of method 1, the acetate ester group protecting the alcohol at the β-carbon position is removed with potassium carbonate, yielding a mixture of (E) and (Z) isomers of ISAχχ247 54. Bases other than potassium carbonate that may be used to remove the protecting group include sodium hydroxide, sodium carbonate, sodium alkoxide, and potassium alkoxide.

Synthesis of compositions enriched in either of the ISAτx247 (E) and (Z)-isomers via organometallic routes

According to embodiments of the present invention, stereoselective synthetic pathways may employ the use of inorganic reagents containing elements such as silicon, boron, titanium, sulfur, phosphorus, and/or lithium. These pathways may proceed through a six-membered ring transition state where one of the members of the ring is the inorganic element from the organometallic reagent. In some embodiments, steric hindrance effects related to the transition state may influence the stereochemical outcome of the reaction. Two exemplary stereoselective schemes will be discussed in the present disclosure. In the first stereoselective scheme (method 3, also shown as Pathway 32 in FIG. 3), a silicon- containing compound undergoes an elimination reaction to produce either the (E) or (Z)- isomer, depending on whether the elimination reaction is carried out under acidic or basic conditions. This is an example of a Peterson olefination. In the second stereoselective scheme (method 4, also shown as Pathway 33 in FIG. 3), each of the isomers is produced from a different precursor. The (Z)-isomer is produced from a titanium and phosphorus containing intermediates, whereas the (E)-isomer is produced through a lithium containing intermediate.

Method 3 This pathway proceeds via the acetyl cyclosporin A aldehyde 51.

A similar reaction scheme has been discussed in general by D J.S. Tsai and D.S. Matteson in "A Stereocontrolled Synthesis of (Z) and (E) Terminal Dienes from Pinacol (E)- l-Trimethylsilyl-l-Propene-3-Boronate," Tetrahedron Letters, Vol. 22, No. 29, pp. 2751- 2752 (1981). The method is illustrated in FIG. 6. In general, the synthesis involves preparing a trimethylsilylallylboronate ester reagent 62, and then treating acetyl cyclosporin A aldehyde 51 with 62 to form a β-trimethylsilyl alcohol 64. This alcohol is believed to form via a boron-containing transition state 63. As the boronate esters are slow-reacting in allylboration reactions, it will be appreciated by those skilled in the art that the use of a faster- reacting borane reagent such as E-γ-trimethylsilyl diethylborane or 9-(E-γ- trimethylsilylallyl)-9-BBN has advantages. The β-trimethylsilyl alcohol 64 may then undergo a Peterson olefination to prepare an alkene, in this case either the diene 65 or the diene 67.

Formation of the alkene follows one of two distinct paths, depending on whether the elimination reaction (the olefination) is carried out under acidic or basic conditions. Under acidic conditions an anti-elimination occurs forming the (E)-isomer, whereas under basic conditions a cώ-elimination occurs to form the (Z)-isomer. It will be appreciated by those skilled in the art that by using this synthetic pathway, either isomer may be prepared from the same precursor. The product of each elimination reaction comprises a composition enriched in one of the two isomers. In one embodiment, enriched means that the composition contains greater than or equal to about 75 percent by weight of an isomer. In other embodiments, the enriched composition my comprise 80, 85, and 90 percent by weight of one of the isomers. The compositions enriched in an isomer may then be combined in a predetermined ratio to arrive at the desired mixture as illustrated in HG. 10.

The reactions in HG. 6 will now be discussed in detail, beginning with the preparation of the boron-containing reagent 62. A general investigation of the use of silicon reagents in the synthesis of carbon-carbon bond forming reactions has been discussed by E. Ehlinger and P. Magnus in "Silicon in Synthesis. 10. The (Trimethylsilyl)allyl Anion: A β- Acyl Anion Equivalent for the Conversion of Aldehydes and Ketones into γ-Lactones," /. Am. Chem. Soc, Vol. 102, No. 15, pp. 5004-5011 (1980). In particular, these investigators teach the reaction between the (trimefhylsilyl)allyl anion and an aldehyde. The anion may be prepared by deprotonating allyltrimethylsilane with sec-butyllithium in tetrahydrofuran at -76°C containing 1 equivalent of tetramethylethylenediamine (TMEDA).

The deprotonation of allyltrimethylsilane (this step is not shown in HG. 6) has been discussed by J.-F. Biellmann and J.-B. Ducep in "Allylic and Benzylic Carbanions Substituted by Heteroatoms," Organic Reactions, Vol. 27 (Wiley, New York, 1982), p. 9. A proton alpha to the heteroatom in substituted allylic systems may be removed with a more basic agent. A large variety of such agents are available, with perhaps n-butyllithium being the most common. n-Butyllithium is used in a stoichiometric amount with the compound to be metalated in solution with tetrahydrofuran (THF). The temperature is usually maintained below 0°C (often below -76°C) where the n-butyllithium has a low reactivity due to its polymeric nature. Addition of a chelating agent such as N,N,N',N'- tetramethylethylenediamine (TMEDA) causes the polymer to dissociate. However, the reaction can also be done at room pemperature, even in the absence of TMEDA.

Allylsilanes are easily deprotonated because the anion that is generated is stabilized not only through conjugation with the adjacent double bond, but also by the neighboring silyl group. The anion may react with electrophiles through either its α-carbon or its γ-carbon. The regiochemical and stereochemical outcome of these reactions depends on several factors, one of the most important of which is the identity of the counterion. See the discussion of allylsilanes by S. E. Thomas in Organic Synthesis: The Roles of Boron and Silicon (Oxford University Press, New York, 1991), pp. 84-87.

In this reaction scheme, the deprotonated allylsilane then undergoes an electrophilic capture by trimethylborate to produce an intermediate, which, when reacted with pinacol, yields the tra«_s-(trimethylsilyl) boronate compound 62. The boronate 62 may also be called an "allylborane" (allylboronate ester). Alternatively, if 9-methoxy-9-dialkylborane is used in the electrophilic capture it would lead to a boronate complex which can be demethoxylated using a boron trifluoride reagent (such as BF3Et₂0) to generate the corresponding 9-(y-trans- trimethylsilylallyl)-9-dialkylborane.

The addition of an aldehyde to an allylborane has been discussed by S. E. Thomas in the above reference at pages 34-35. The addition of an aldehyde to an allylborane, wherein the latter is unsymmetrically substituted at the distal end of the carbon-carbon double bond ("distal" meaning furthest away from the boron atom) produces a homoallylic alcohol containing two adjacent chiral centers. (E)-allylboranes give rise to the threo- diastereoisomer, while (Z)-allylboranes give rise to the eryt/zrø-diastereoisomer. An exemplary reaction of an (E)-allylborane 62 with cyclosporin A aldehyde 51 is shown in FIG. 6, where the boron intermediate 63 is fonned after stirring the reactants in a THF solution for a period of several days.

The reference numeral 69 in the boron intermediate 63 (FIG. 6) is meant to indicate that any number of structures are possible at the boron position. For example, if the boronate reagent 62 is a trialkylsilylallyl boronate ester, then the structure at 69 would comprise a 5- membered ring that includes two oxygen atoms. Substitutions on the boronate or borane reagents employed in 62 will be present in the structure in 63.

It has been postulated that the stereoselectivity that is achieved in reactions involving allylboranes with aldehydes may be due to the six-membered ring chair-like transition state exemplified by the boron intermediate 63, and depicted in FIG. 6. Only the two carbonyl atoms of the aldehyde (the carbon and the oxygen which are double bonded) become members of the six-membered ring transition; the remainder of the aldehyde extends off the ring. The CsA portion of the aldehyde that extends away from the six-membered ring is postulated to exist in an equatorial rather than axial position relative to the ring because the latter configuration would give rise to unfavorable steric hindrance between that substituent and an oxygen atom of the allylborane 62. It will also be appreciated by those skilled in the art that the position of the SiMe₃ group from the (trimethylsilyl)allyl anion is shown occupying an equatorial position in FIG. 6 because this example started with the (E)- diastereomer of the allylborane. Alternatively, the SiMe₃ group could have been drawn in an axial position if the starting allylborane had been the (Z)-diastereomer.

Alternatively, it is contemplated to prepare the eryt/tro-silyl alcohol, for which acid elimination would give the cω-isomer and base elimination would give the traras-isomer, in an opposite manner to the elimination reactions discussed above. It will be obvious to those skilled in the art that the same products would be obtained at the end of the synthesis.

Treatment of the transition state product 63 with triethanolamine yields the β- trimethylsilyl alcohol 64. On the other hand, allylboration product of (trimethylsilylallyl)dialkyl borane yields silyl alcohol 64 upon oxidation using NaOH/H₂0₂ or aqueous workup. The alcohol 64 depicted in FIG. 6 is the tftreodiastereoisomer, since the transition state allylborane 63 was in the (E)-configuration, although it will be appreciated by those skilled in the art that the other diastereoisomere could have been prepared as well if starting from the Z-allylborane reagent. The diastereoselectivity in the newly created chiral centers is not determined at this stage due to removal of these chiral centers at a later stage of the synthesis. The structure of the β-trimethylsilyl alcohol 64 shown in HG. 6 has been confirmed by the applicants using spectral techniques.

In a method of alkene synthesis known as a Peterson olefination, elimination of the trialkylsilyl group and the hydroxy group from the β-trimethylsilyl alcohol 64 leads to an alkene; in this case a diene, due to the double bond that is already present between the two terminal carbons of the chain. A discussion of the conversion of β-hydroxysilanes to alkenes has been presented in the S. E. Thomas reference at pages 68-69. A further discussion of this reaction is presented by P.F. Hurdlik and D. Peterson in "Stereospecific Olefin-Forming Elimination Reactions of β-Hydroxysilanes," /. Am. Chem. Soc, Vol. 97, No. 6, pp. 1464- 1468 (1975).

Referring to FIG. 6, the elimination reaction converting the alcohol 64 to a diene may follow one of two distinct mechanistic pathways depending on whether the reaction is carried out under acidic or basic conditions. One pathway leads to the diene 65, while the other pathway leads to the diene 67. Under acidic conditions αntz-elimination occurs, while under basic conditions syn-elimination occurs. In other words, the elimination reactions of β- hydroxysilanes are stereospecific, and the acid- and base-promoted reactions take the opposite stereochemical course. Typical acids for the acid-promoted reaction may include acetic acid, sulfuric acid and various Lewis acids; typical bases include sodium hydride and potassium hydride or potassium tert-butoxide. It may be the case that elimination reactions using sodium hydride in THF are slow at room temperature, while elimination reactions that use potassium hydride take place more readily.

The stereospecificity occurs at this stage of the reaction pathway because elimination under acidic conditions requires the trimethylsilyl and hydroxy groups to be in an antiperiplanar relationship. In contrast, elimination under basic conditions requires that the trimethylsilyl and hydroxy groups adopt a synperiplanar relationship. The latter condition facilitates the formation of a strong silicon-oxygen bond and an intermediate four-membered ring, which breaks down in a manner analogous to the final step of a Wittig reaction. It will be appreciated by those skilled in the art that a strong silicon-oxygen bond replaces a weaker silicon-carbon bond, which overrides the replacement of a strong carbon-oxygen bond with a weaker carbon-carbon π bond.

Thus the products of the stereospecific elimination of a β-hydroxy alkylsilane are the acetyl-(E)-l,3-diene compound 67 and the acetyl-(Z)- 1,3-diene compound 65. As in the previous methods, the protecting group may now be removed from each of these dienes by treatment with K₂CO₃ in methanol and water. This removes the acetate group bonded to the β-carbon of the 1-amino acid residue, returning the functional group on that carbon to an alcohol. Bases other than potassium carbonate that may be used to remove the protecting group include sodium hydroxide, sodium carbonate, sodium alkoxide, and potassium alkoxide.

At this stage of the preparation the synthesis is substantially complete. The compositions enriched in one or the other of the isomers may be mixed to achieve the desired ratio of isomers in the mixture. By "enriched" is meant a product that comprises at least about 75 percent by weight of that isomer; in other words, the product may contain up to 25 percent by weight of the "undesired" isomer. The mixture is designed to achieve the desired pharmacological result.

Method 4 This pathway also proceeds via the acetyl cyclosporin A aldehyde 51.

An alternate scheme for producing stereoselective isomers is illustrated in FIGS. 7-8. This synthetic pathway differs from those previously discussed, in that 1) the synthetic pathway for producing the (E)-isomer of ISAτχ247 proceeds through different intermediates than that for the (Z)-isomer, and 2) these synthetic pathways make use of titanium and lithium-containing reagents and/or intermediates.

Titanium reagents are known to be particularly useful in organic synthesis because they are regio- and stereoselective in their reactions with aldehydes and ketones. The general nature of titanium in stereoselective chemistry has been discussed by M.T. Reetz in Organotitanium Reagents in Organic Synthesis (Springer- Verlag, Berlin, 1986), pp. VII, 148- 149, and 164-165. Here it is stated that the nature of the titanium ligand may be varied such that the electronic and steric identity of the reagent can be manipulated, and the stereochemical outcome of many C-C bond forming reactions may be predicted. According to this chemistry, the union of two prochiral centers of achiral molecules creates two centers of chirality. A general rule governing the stereoselective outcome is that Z-configured enolates or crotyl metal compounds preferentially form syn-adducts, while E-configured reagents favor the anti-diastereomers. The trends may again be explained by assuming a six- membered cyclic transition state having a chair geometry. A specific example of this type of stereoselective synthesis has been discussed by Y. Ikeda et al. in "Stereoselective Synthesis of (Z)- and (E)-1,3-Alkadienes from Aldehydes Using Organotitanium and Lithium Reagents," Tetrahedron, Vol. 43, No. 4, pp. 723-730 (1987). This reference discloses that allyldiphenylphosphine may be used to produce a [3- (Diphenylphosphino)allyl]titanium reagent, which in turn may be condensed with an aldehyde followed by phosphonium salt formation to give a (Z)-l,3-alkadiene in a highly regio- and stereoselective manner. In contrast, a lithiated allyldiphenylphosphine oxide can condense with an aldehyde to give an (E)-l,3-alkadiene directly, again with the desired stereoselectivity.

Referring to FIG. 7, synthesis of the (Z)-isomer of ISA χ247 proceeds (as in the previous schemes) by generating acetyl cyclosporin A aldehyde 51 from cyclosporin A 34. The [3-(diphenylphosphino)allyl]titanium reagent 72 is prepared by deprotonating allyldiphenylphosphine 71 with a strong base such as t-BuLi, and then reacting the product with titanium tetraisopropoxide. A transition state 73 is theoretically proposed leading to the erythro-α-adduct 74, which then may be converted to the β-oxidophosphonium salt 75 by treatment of 74 with iodomethane (Mel). It is postulated that the existence of the transition state 73 is at least in part responsible for the stereoselectivity of this synthetic pathway.

In accordance with the exemplary methods outlined in the present disclosure, the metal site of the organometallic reagent may be the entity that controls regioselectivity (Ikeda, p. 725). This means that the aldehyde 51 in HG. 7 reacts with the diphenylphosphino compound 72 at its α-position to give the corresponding α-adduct 74, since the γ-carbon of the diphenylphosphino group is coordinated to the metal, which in this case is titanium. The observed Z selectivity of the diene product is explained by considering the six-membered transition state 73. Since both the bulky cyclosporin A side chain of the aldehyde 35 and the diphenylphosphino group are postulated to occupy equatorial positions in the transition state, the erythro α-adduct 74 is selectively formed, giving rise to the (Z)-l,3-diene 76.

In contrast to the reaction pathway depicted in FIG. 7, in which the (Z)-isomer of ISA χ247 is produced via a titanium transition state, the (E)-isomer is not as easily produced by this method. In fact, attempts to synthesize the (E)-isomer by this method are generally reported to result in low yields. Instead, as shown in HG. 8, the lithio derivative 82 may be reacted with the aldehyde 51 to produce the lithium containing transition state 83, which forms the 1,3-diene in E/Z ratios in a range greater than approximately 75:25. As in FIG. 7, the high stereoselectivity of the reaction product is possibly due to the transition state 83, in which the vinyl group of the lithium reagent 82 and the cyclosporin A side chain of the aldehyde 51 are postulated to occupy equatorial positions, thereby producing the (E)-l,3- diene 84 in a stereoselective manner. As discussed previously, certain undesirable side- reactions involving the acetate protecting group may be avoided in all stereoselective syntheses through the use of protecting groups such as benzoate esters or silyl ethers.

Preparation of mixtures

As stated previously, certain mixtures of cis and trαns-isomers of ISAχχ247 were found to exhibit a combination of enhanced potency and/or reduced toxicity over the naturally occurring and presently known cyclosporins.

According to embodiments of the present invention, ISAτχ247 isomers (and derivatives thereof) are synthesized by stereoselective pathways that may vary in their degree of stereoselectivity. Stereoselective pathways may produce a first material or composition enriched in the (E)-isomer, and a second material or composition enriched in the (Z)-isomer, and these materials may then be combined such that the resulting mixture has a desired ratio of the two isomers. Alternatively, it is contemplated that the first material may be prepared by separating a reaction product to isolate and enrich the (E)-isomer, and the second material may be prepared by separating a reaction product to isolate and enrich the (Z)-isomer. In yet another embodiment, the reactions conditions of a stereoselective pathway may be tailored to produce the desired ratio directly in a prepared mixture.

These principles are illustrated in HGS. 9A-C and 10. In FIGS. 9A-C, three hypothetical synthetic reactions are shown that produce ratios of the (E) to the (Z)-isomer of approximately 65 to 35 percent by weight, 50 to 50 percent by weight, and 35 to 65 percent by weight, respectively. Of course, these ratios are exemplary and for illustrative purposes only, and any hypothetical set of numbers could have been chosen. It will be obvious to those skilled in the art that the reaction conditions used to produce the ratio in FIG. 9A may be different from those of HGS. 9B and 9C in order to achieve a different ratio of isomers in the product mixture. The conditions of each reaction have been tailored to produce a particular ratio of the two isomers for that case.

In contrast to some synthetic pathways, where a mixture of isomers is produced, the isomers may first be prepared individually, and then mixed in predetermined proportions to achieve the desired ratio. This concept is illustrated in FIG. 10, where the product of one stereoselective pathway is enriched in one of the isomers such that the product comprises greater than about 75 percent by weight of the (E) isomer, and the product of the other stereoselective pathway is enriched in the other isomer such that this product comprises greater than about 75 percent by weight of the (Z) isomer. These numbers are exemplary too, and the purity of the desired isomer resulting from a stereoselective pathway may be greater than or equal to about 75 percent by weight in one embodiment. In other embodiments the desired isomer may comprise greater than or equal to about 80, 85, 90, and 95 percent by weight, respectively.

After synthesizing the isomers individually, they may be mixed to achieve the desired ratio, as illustrated in FIG. 10. For illustrative purposes, the same hypothetical ratios are chosen in HG. 10 as those used in HGS. 9A-C. Referring to HG. 10, the (E) and (Z)- isomers are mixed to yield three different mixtures that comprise ratios of the (E) to the (Z)- isomer of approximately 65 to 35 percent by weight, 50 to 50 percent by weight, and 35 to 65 percent by weight, respectively.

In an alternative embodiment, a mixture of the (E) and (Z)-isomers of ISAτχ247 isomers may be separated such that the mixture is enriched in one isomer over the other. For example, a Diels-Alder reaction may be used to convert the cis-isomer to a closed ring compound by reacting it with an alkene. If the alkene is bound to a substrate that is capable of isolation (e.g., filterable), the cis isomer may be substantially removed from the mixture, leaving a composition enriched in the trans isomer. The cis isomer may be re-constituted from the closed ring compound with the application of heat, producing a composition enriched in the cis isomer. Thus, in this manner, the cis and trans isomers may be separated. In practice, the ratio of the (E) to (Z)-isomers in any mixture, regardless of the degree of stereoselectively of the method by which it was produced, may take on a broad range of values. For example, the mixture may comprise from about 10 to 90 percent of the (E)- isomer to about 90 to 10 percent of the (Z)-isomer. In other embodiments, the mixture may contain from about 15 to 85 percent by weight of the (E)-isomer and about 85 to 15 percent of the (Z)-isomer; or about 25 to 75 percent by weight of the (E)-isomer and about 75 to 25 percent by weight of the (Z)-isomer; or about 35 to 65 percent by weight of the (E)-isomer and about 65 to 35 percent by weight of the (Z)-isomer; or about 45 to 55 percent by weight of the (E)-isomer and about 55 to 45 percent of the (Z)-isomer. In still another embodiment, the isomeric mixture is an ISAχχ247 mixture which comprises about 45 to 50 percent by weight of the (E)-isomer and about 50 to 55 percent by weight of the (Z)-isomer. These percentages by weight are based on the total weight of the composition, and it will be understood that the sum of the weight percent of the (E) isomer and the (Z) isomer is 100 weight percent. In other words, a mixture might contain 65 percent by weight of the (E)- isomer and 35 percent by weight of the (Z)-isomer, or vice versa.

The percentage of one isomer or another in a mixture can be verified using nuclear magnetic resonance (NMR), or other techniques well known in the art.

Pharmaceutical compositions

This invention also relates to a method of treatment for patients in need of immunosuppression involving the administration of pharmaceutical compositions comprising the inventive mixture as the active constituents. The indications for which this combination is of interest include in particular autoimmune and inflammatory conditions and conditions associated with or causal to transplant rejection, e.g., treatment (including amelioration, reduction, elimination or cure of etiology or symptoms) or prevention (including substantial or complete restriction, prophylaxis or avoidance) of the following:

a) Acute organ or tissue transplant rejection, e.g., treatment of recipients of, e.g., heart, lung, combined heart-lung, liver, kidney, pancreatic, skin, bowel, or corneal transplants, especially prevention and/or treatment of T-cell mediated rejection, as well as graft- versus-host disease, such as following bone marrow transplantation. b) Chronic rejection of a transplanted organ, in particular, prevention of graft vessel disease, e.g., characterized by stenosis of the arteries of the graft as a result of intima thickening due to smooth muscle cell proliferation and associated effects.

c) Xenograft rejection, including the acute, hyperacute or chronic rejection of an organ occurring when the organ donor is of a different species from the recipient, most especially rejection mediated by B-cells or antibody-mediated rejection.

d) Autoimmune disease and inflammatory conditions, in particular inflammatory conditions with an etiology including an immunological or autoimmune component such as arthritis (for example rheumatoid arthritis, arthritis chronica progrediente and arthritis deformans) and other rheumatic diseases. Specific autoimmune diseases for which the synergistic combination of the invention may be employed include, autoimmune hematological disorders (including e.g. hemolytic anemia, aplastic anemia, pure red cell anemia and idiopathic thrombocytopenia), systemic lupus erythematosus, polychondritis, sclerodoma, Wegener granulomatosis, dermatomyositis, chronic active hepatitis, myasthenia gravis, psoriasis, Steven- Johnson syndrome, idiopathic sprue, (autoimmune) inflammatory bowel disease (including e.g. ulcerative colitis and Crohn's disease), endocrine ophthalmopathy, Graves disease, sarcoidosis, multiple sclerosis, primary biliary cirrhosis, juvenile diabetes (diabetes mellitus type I), uveitis (anterior and posterior), keratoconjunctivitis sicca and vernal keratoconjunctivitis, interstitial lung fibrosis, psoriatic arthritis, glomerulonephritis (with and without nephrotic syndrome, e.g. including idiopathic nephrotic syndrome or minimal change nephropathy) and juvenile dermatomyositis. Autoimmune and inflammatory conditions of the skin are also considered to be amenable to treatment and prevention using the synergistic combination of the invention, e.g., psoriasis, contact dermatitis, atopic dermatitis, alopecia areata, erythema multiforma, dermatitis herpetiformis, scleroderma, vitiligo, hypersensitivity angiitis, urticaria, bullous pemphigoid, lupus erythematosus, pemphigus, epidermolysis bullosa acquisita, and other inflammatory or allergic conditions of the skin, as are inflammatory conditions of the lungs and airways including asthma, allergies, and pneumoconiosis. The isomeric analogue mixtures of this invention may be administered neat or with a pharmaceutical carrier to a warm-blooded animal in need thereof. The pharmaceutical carrier may be solid or liquid. The inventive mixture may be administered orally, topically, parenterally, by inhalation spray or rectally in dosage unit formulations containing conventional non-toxic pharmaceutically acceptable carriers, adjuvants and vehicles. The term parenteral, as used herein, includes subcutaneous injections, intravenous, intramuscular, intrasternal injection or infusion techniques.

The pharmaceutical compositions containing the inventive mixture may preferably be in a form suitable for oral use, for example, as tablets, troches, lozenges, aqueous or oily suspensions, dispersible powders or granules, emulsions, hard or soft capsules, or syrups or elixirs. Compositions intended for oral use may be prepared according to methods known to the art for the manufacture of pharmaceutical compositions and such compositions may contain one or more agents selected from the group consisting of sweetening agents, flavoring agents, coloring agents and preserving agents in order to provide pharmaceutically elegant and palatable preparation. Tablets containing the active ingredient in admixture with non-toxic pharmaceutically acceptable excipients may also be manufactured by known methods. The excipients used may be for example, (1) inert diluents such as calcium carbonate, lactose, calcium phosphate or sodium phosphate; (2) granulating and disintegrating agents such as corn starch, or alginic acid; (3) binding agents such as starch, gelatin or acacia, and (4) lubricating agents such as magnesium stearate, stearic acid or talc. The tablets may be uncoated or they may be coated by known techniques to delay disintegration and absorption in the gastrointestinal tract and thereby provide a sustained action over a longer period. For example, a time delay material such as glyceryl monostearate or glyceryl distearate may be employed. They may also be coated by the techniques described in the U.S. Patent Number 4,256,108; 4,160,452; and 4,265,874 to form osmotic therapeutic tablets for controlled release.

In some cases, formulations for oral use may be in the form of hard gelatin capsules wherein the active ingredient is mixed with an inert solid diluent, for example, calcium carbonate, calcium phosphate or kaolin. They may also be in the form of soft gelatin capsules wherein the active ingredient is mixed with water or an oil medium, for example peanut oil, liquid paraffin, or olive oil. Aqueous suspensions normally contain the active materials in admixture with excipients suitable for the manufacture of aqueous suspensions. Such excipients may include: (1) suspending agents such as sodium carboxymethylcellulose, methylcellulose, hydroxypropylmethylcellulose, sodium alginate, polyvinylpyrrolidone, gum tragacanth and gum acacia; or (2) dispersing or wetting agents which may be a naturally-occurring phosphatide such as lecithin, a condensation product of an alkylene oxide with a fatty acid, for example, polyoxyethylene stearate, a condensation product of ethylene oxide with a long chain aliphatic alcohol, for example, heptadecaethyleneoxycetanol, a condensation product of ethylene oxide with a partial ester derived from a fatty acid and a hexitol such as polyoxyethylene sorbitol monooleate, or a condensation product of ethylene oxide with a partial ester derived from a fatty acid and a hexitol anhydride, for example polyoxyethylene sorbitan monooleate.

The aqueous suspensions may also contain one or more preservatives, for example, ethyl or n-propyl p-hydroxybenzoate; one or more coloring agents; one or more flavoring agents; and one or more sweetening agents such as sucrose, aspartame or saccharin.

Oily suspension may be formulated by suspending the active ingredient in a vegetable oil, for example arachis oil, olive oil, sesame oil or coconut oil, a fish oil which contains omega 3 fatty acid, or in a mineral oil such as liquid paraffin. The oily suspensions may contain a thickening agent, for example beeswax, hard paraffin or cetyl alcohol. Sweetening agents and flavoring agents may be added to provide a palatable oral preparation. These compositions may be preserved by the addition of an antioxidant such as ascorbic acid.

Dispersible powders and granules are suitable for the preparation of an aqueous suspension. They provide the active ingredient in a mixture with a dispersing or wetting agent, a suspending agent and one or more preservatives. Suitable dispersing or wetting agents and suspending agents are exemplified by those already mentioned above. Additional excipients, for example, those sweetening, flavoring and coloring agents described above may also be present. The pharmaceutical compositions containing the inventive mixture may also be in the form of oil-in-water emulsions. The oily phase may be a vegetable oil such as olive oil or arachis oils, or a mineral oil such as liquid paraffin or a mixture thereof. Suitable emulsifying agents may be (1) naturally-occurring gums such as gum acacia and gum tragacanth, (2) naturally-occurring phosphatides such as soy bean and lecithin, (3) esters or partial ester 30 derived from fatty acids and hexitol anhydrides, for example, sorbitan monooleate, (4) condensation products of said partial esters with ethylene oxide, for example, polyoxyethylene sorbitan monooleate. The emulsions may also contain sweetening and flavoring agents.

Syrups and elixirs may be formulated with sweetening agents, for example, glycerol, propylene glycol, sorbitol, aspartame or sucrose. Such formulations may also contain a demulcent, a preservative and flavoring and coloring agents.

The pharmaceutical compositions may be in the form of a sterile injectable aqueous or oleagenous suspension. This suspension may be formulated according to known methods using those suitable dispersing or wetting agents and suspending agents which have been mentioned above. The sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example as a solution in 1,3-butanediol. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. For this purpose any bland fixed oil may be employed including synthetic mono- or di-glycerides. In addition, fatty acids such as oleic acid find use in the preparation of injectables.

The inventive mixture may also be administered in the form of suppositories for rectal administration of the drug. These compositions can be prepared by mixing the drug with a suitable non-irritating excipient which is solid at ordinary temperatures but liquid at the rectal temperature and will therefore melt in the rectum to release the drug. Such materials are cocoa butter and polyethylene glycols. For topical use, creams, ointments, jellies, solutions or suspensions, etc., containing the disclosed cyclosporines are employed.

In a particularly preferred embodiment, a liquid solution containing a surfactant, ethanol, a lipophilic and/or an ampiphilic solvent as non-active ingredients is used. Specifically, an oral multiple emulsion formula containing the isomeric analogue mixture and the following non-medicinal ingredients: d-alpha Tocopheryl polyethylene glycol 1000 succinate (vitamin E TPGS), medium chain triglyceride (MCT) oil, Tween 40, and ethanol is used. A soft gelatin capsule (comprising gelatin, glycerin, water, and sorbitol) containing the isomeric analogue mixture and the same non-medicinal ingredients as the oral solution may also preferably be used.

Dosage levels of the order from about 0.05 mg to about 50 mg per kilogram of body weight per day are useful in the treatment of the above-indicated conditions. The dose level and schedule of administration may vary depending on the particular isomeric mixture used, the condition to be treated, and such additional factors as the age and condition of the subject. Preferred doses are from about 0.5 to about 10 mg kg/day and from about 0.1 to about 10 mg/kg/day. In a preferred embodiment, from about 2 to about 6 mg/kg/day is administered orally b.i.d. In a particularly preferred embodiment, about 0.5 to about 3 mg kg day is administered orally b.i.d.

The amount of active ingredient that may be combined with the carrier materials to produce a single dosage fonn will vary depending upon the host treated and the particular mode of administration. For example, a formulation intended for the oral administration to humans may contain from 2.5 mg to 2.5 g of active agent compounded with an appropriate and convenient amount of carrier material which may vary from about 5 to about 95 percent of the total composition. Unit dosage forms will generally contain between from about 5 mg to about 500 mg of active ingredient. In a preferred embodiment, individual capsules containing about 50 mg isomeric mixture are employed for oral administration. In another preferred embodiment, oral solutions containing about 50 mg/mL isomeric mixture are used for oral administration. It will be understood, however, that the specific dose level for any particular patient will depend upon a variety of factors including the activity of the specific compound employed, the age, body weight, general health, sex, diet, time of administration, route of administration, rate of excretion, drug combination and the nature and severity of the particular disease or condition undergoing therapy.

Methodology

The use of cyclosporine derivatives, a class of cyclic polypeptides produced by the fungus Tolypocladium inflatum Gams, is increasing in immunosuppressive therapy due to their preferential effects on T-cell mediated reactions. Cyclosporine derivatives have been observed to reversibly inhibit immunocompetent lymphocytes, particularly T-lymphocytes, as well as inhibit lymphokine production and release. This action is primarily mediated through cyclosporine A-induced inhibition of calcineurin, a phosphatase enzyme found in the cytoplasm of cells (Schreiber and Crabtree, 1992). An indicator of the efficacy of cyclosporine A or a cyclosporine A derivative is its ability to inhibit the phosphatase activity of calcineurin. The calcineurin inhibition assay measures the activity of the drug at its site of action, and, as such, is the most accurate and direct in vitro assessment of the potency of cyclosporine A analogues (Fruman etal, 1992).

ISAχχ247 is a cyclosporine A analogue that is similar to cyclosporine A, except for a novel modification of a functional group on the amino acid 1 residue of the molecule. We have now found that ISAχχ247 exhibits up to 3-fold greater potency than cyclosporine A in the in vitro calcineurin inhibition assay.

Pharmacodynamic studies (in vivo and in vitro) have shown that ISAχχ247 has more potency than other existing cyclosporine compounds. The efficacy of isomeric mixtures of cyclosporine analogues ranging from about 10:90 to about 90:10 (trans- to cis-), in particular ISAχχ247 having 50-55% Z-isomer and 45-50% E-isomer, as an immunosuppressive agent (versus cyclosporine A) has been demonstrated in an in vitro calcineurin activity assay, a rat heart transplant model, an islet cell allotransplantation mouse model, a collagen-induced arthritis model in the mouse, and/or an antigen-induced arthritis model in the rabbit. The data show that these isomeric mixtures are equivalent to or more potent than cyclosporine A, and therefore useful for the treatment of immunoregulatory disorders. There are numerous adverse effects associated with cyclosporine A therapy, including nephrotoxicity, hepatotoxicity, cataractogenesis, hirsutism, parathesis, and gingival hyperplasia to name a few (Sketris et al., 1995). Of these, nephrotoxicity is one of the more serious dose-related adverse effects resulting from cyclosporine A administration. The exact mechanism by which cyclosporine A causes renal injury is not known. However, it is proposed that an increase in the levels of vasoconstrictive substances in the kidney leads to the local vasoconstriction of the afferent glomerular arterioles. This can result in ischemia, a decrease in glomerular filtration rate, and over the long term, interstitial fibrosis.

The nonclinical safety of ISAχχ247 has been evaluated in a number of animal species. Repeated-dose oral toxicity studies in rats, dogs, and primates showed that ISAχχ247 was well-tolerated and produced effects that were consistent with immunosuppression. The only toxicological effect noted in all species was diarrhea loose feces.

ISAχχ247 does not exhibit mutagenic activity as demonstrated in in vitro bacterial reverse mutation and chromosome aberration assays, and in an in vivo rat micronucleus assay. No carcinogenicity studies have been completed to date. Reproductive toxicity studies with ISAχχ247 have been completed in pregnant rats and rabbits. There were no treatment-related malformations or alterations. At doses that resulted in maternal toxicity, corresponding embryotoxicity was observed.

EXAMPLES

Example 1: Acetylation of Cyclosporine A

Acetic anhydride (140 milliliters) was added to Cyclosporin A (50.0 grams, 41.6 millimoles) and the mixture stirred at room temperature under a N₂ atmosphere until all of the Cyclosporin A has dissolved. Dimethylaminopyridine (7.62g, 62.4mmol) was added and the reaction stirred at room temperature under a N₂ atmosphere for 3 hours or until the reaction was complete. The reaction mixture was cooled to 5°C and then filtered. The collected solids were washed with hexane to drive off additional acetic anhydride. The resulting pasty solid was slowly transferred to a vigorously stirred 5% aqueous sodium bicarbonate solution (1.5 liters). The resulting suspension was stirred until a fine slurry was obtained and the evolution of C0₂ had ceased. The solids were collected by filtration and washed with water until the filtrate had neutral pH. The solid product was dried in a vacuum oven overnight (55°C) to give 44.0g (85%) of the product as a colorless solid.

Example 2: Oxidation of Product from Example 1

Acetonitrile (320mL) and water (80mL) were added to acetyl Cyclosporin A (42.97g, 34.54mmol) and the mixture stirred until all of the material was dissolved. Sodium periodate (14.77g, 69.08mmol) was added, followed by the addition of ruthenium chloride hydrate (0.358g, 1.73mmol) and then the reaction stirred at room temperature for 3 hours under a N₂ atmosphere. Water (300mL) was added and the mixture transferred to a separatory funnel. The mixture was extracted twice with ethyl acetate (300mL and then 250 mL). The dark black ethyl acetate extracts were combined and washed with 250mL water followed by 250mL brine. The organic solution was then dried over MgSO₄ and the solvent evaporated to give a greenish-black solid. The crude product was chromatographed over silica gel using 40% acetone/60% hexane as eluent to give the product (29. lg, 68%) as a colorless solid.

Example 3: Preparation of Acetyl ISAτχ247 i) In situ generation of ylide:

Acetyl Cyclosporin A aldehyde (31.84g, 25.84mmol) was added to 340mL toluene and the mixture stirred until the material was completely dissolved. To the resulting solution was added 340mL of 1 normal aqueous sodium hydroxide. The resulting mixture was stirred vigorously and then allyl triphenylphosphonium bromide (58.22g, 151.90mmol) added. The reaction was stirred for 24 hours at room temperature and then additional allyl triphenylphosphonium bromide (16.64g, 43.42mmol) added and stirring continued for a further 24 hours. The mixture was transferred to a separatory funnel and the toluene phase separated. The aqueous phase was extracted with an additional 200mL of toluene. The two toluene extracts were combined and washed sequentially with 200mL deionized water and 200mL saturated aqueous sodium chloride solution. The solution was dried over MgSO₄, filtered, and the toluene evaporated to give a very viscous gel. This material was treated with 142mL of ethyl acetate and stirred until a fine slurry formed. Hexane (570mL) was slowly added with rapid stirring. The stirring was continued for 30 minutes and then the resulting suspension was filtered and the collected solids washed with 160mL of 5:1 hexane/ethyl acetate. The combined filtrate was concentrated on a rotary evaporator to a viscous semi- solid. This material was treated with 75mL ethyl acetate and stirred until a fine slurry was obtained. Hexane (225mL) was slowly added with rapid stirring. Stirring was continued for 30 minutes and then the resulting suspension was filtered and the collected solids washed with lOOmL of 5:1 hexane/ethyl acetate. The filtrate was concentrated on a rotary evaporator to give a pale yellow solid. The crude product was chromatographed over silica gel using 40% acetone/60% hexane as eluent to give the product (14.09g) as a colorless solid.

ii) Pre-formed ylide generation and reaction in presence of LiBr:

To a stirred suspension of allyltriphenyl phosphonium bromide (7.67 g, 20 mmol) in THF (20 mL) being cooled to 0° C, was added a solution of KOBu^f in tetrahydrofuran (20 mL, 20 mmol, 1 M solution.). Stirring was continued at this temperature for 30 minutes and a solution of LiBr in THF (10 mL, 10 mmol, 1 M solution) was added. The reaction mixture was then stined for 30 minutes and a solution of acetyl CsA-aldehyde (4.93 g, 4 mmol) in THF (10 mL) was added through a cannula. After stirring for 15 minutes at room temperature, the reaction mixture was quenched with saturated NB^Cl solution (25 mL). Workup and chromatography as above furnished acetylated ISAχχ247 as a colorless solid (3.5g).

Example 4: Preparation of ISAτχ247

Acetyl ISAχχ247 (14.6g, 11.62mmol) was dissolved in 340mL of methanol and then 135mL deionized water added. Potassium carbonate (13.36g, 96.66mmol) was added and the mixture stirred at room temperature for 24 to 48 hours until the reaction was complete. Most of the methanol was evaporated and then 250mL ethyl acetate was added with stirring. A 10% aqueous citric acid solution (120mL) was slowly added and then the ethyl acetate phase separated. The aqueous phase was extracted with an additional 200mL portion of ethyl acetate. The combined ethyl acetate extracts were washed sequentially with 150mL deionized water, lOOmL 10% aqueous citric acid solution and 150mL saturated aqueous sodium chloride and then dried over MgSO₄. The ethyl acetate was evaporated to give a pale yellow solid. The crude product was chromatographed over silica gel using 40% acetone/60% hexane as eluent to give ISAχχ247 (10.5 lg, 75%) as a colorless solid. ISAχχ247 contains 45-50% E-isomer and 50-55% Z-isomer. The products in Examples 1-4 were characterized by mass spectrometry and/or nuclear magnetic resonance spectroscopy.

Example 5: Preparation of Acetyl-η-bromocyclosporin A

Acetyl Cyclosporin A (41.48 g, 33.3 mmol) prepared as in Example 1, N- bromosuccinimide (10.39g, 58.4mmol) and azo-bis-isobutyronitrile (1.09g, 6.67mmol) were dissolved in 250mL of carbon tetrachloride and the resulting mixture heated to reflux for 2.5 hours. The mixture was cooled and the solvent evaporated. The residue was treated with 350mL diethyl ether and filtered to remove the insoluble material. The filtrate was washed sequentially with 150mL water and 150mL brine, then dried over magnesium sulfate and the solvent evaporated. The crude material was chromatographed on silica gel with acetone/hexane (2:3) to give 28.57g (65%) of acetyl-γ-bromocylosporin A as a yellow solid.

Example 6: Preparation of Triphenylphosphonium Bromide of Acetyl Cyclosporin A

Acetyl-γ-bromocylosporin A (28.55g, 21.6mmol) and triphenylphosphme (7.55g, 28.8mmol) were dissolved in 210mL of toluene and the resulting solution heated to 100°C for 21 hours. The solution was cooled and the toluene evaporated. The resulting oily, semi-solid was treated with 250mL of hexane/ether (1:4), mixed thoroughly and the solvent decanted off. This process was repeated 3 more times with 150mL ether. The residue was then dissolved in 50mL ethyl acetate and precipitated with 220mL hexane. The resulting solid was then collected by filtration to give 22.5g (66%) of triphenylphosphonium bromide of acetyl cyclosporin A as a tan-colored solid.

Example 7: Wittig Reaction

The triphenylphosphonium bromide of acetyl cyclosporin (lOOmg, 0.06mmol), an excess of 37% formaldehyde (0.25mL) and toluene (2mL) were stirred rapidly at room temperature. Aqueous sodium hydroxide as a IN solution (2mL) was added dropwise and stirring continued for 3.5 hours. The reaction mixture was diluted with ethyl acetate (20mL) and water (lOmL). The ethyl acetate phase was separated, washed sequentially with water (lOmL) and brine (lOmL), dried over magnesium sulfate and the solvent evaporated. The crude material was chromatographed on silica gel with acetone/hexane (2:3) to give 70mg (88%) of a mixture of (E) and (Z)-isomers of acetyl ISAτχ247 as a colorless solid. Example 8: De-acetylation of the Wittig Reaction Product

The mixture of isomers from Example 7 (70mg., 0.056mmol) was dissolved in methanol (5mL) and then water (lmL) added. Potassium carbonate (75mg) was added and the reaction stirred at room temperature for 19 hours. Most of the methanol was evaporated and 15mL ethyl acetate added to the residue followed by lOmL of 10% aqueous citric acid. The ethyl acetate phase was separated and the aqueous phase extracted with an additional lOmL of ethyl acetate. The combined ethyl acetate extracts were washed sequentially with lOmL water, lOmL 10% aqueous citric acid and lOmL brine before drying over magnesium sulfate and evaporating the solvent. The crude material was chromatographed on silica gel with acetone/hexane (2:3) to give 37mg (54%) of ISAτχ247 as a colorless solid containing about 85% E-isomer and about 15% Z-isomer.

The products in Examples 5-8 were characterized by mass spectrometry and/or nuclear magnetic resonance spectrometry.

Example 9: Preparation of the Geometrical Isomers of ISA χ247

The cis- and trαns-isomers of ISAχχ247 may be independently synthesized using the following reaction scheme. The sequence involves known metalation of allyltrimethylsilane, the electrophilic capture by a trimethylborate, followed by the hydrolysis and then transesterification to generate the intermediate trαnj-(trimethylsilyl)allylboronate ester. Allylboration of cyclosporine aldehyde furnished a boron intermediate, which is converted to the desired β-trimethylsilyl alcohol, by sequestration. The diastereoselectivity in the creation of new chiral centers is not determined at this stage due to removal of these centers at a later stage. It should be noted that the relative stereochemistry of the two centers in the β- trimethylsilyl alcohol is anti in agreement with expectations and is due to the trans double bond in the trαn_s^,-(trimethylsilyl) boronate precursor.

Base-promoted elimination (Hudrlick et al, 1975) of β-trimethylsilyl alcohol furnished a composition enriched in acetyl-(Z)- 1,3-diene while acid-promoted elimination gave a composition enriched in acetyl-(E)- 1,3-diene. Deprotection leads to the respective diene alcohols, the (Z) and (E)-isomers of ISAχχ247, respectively. An alternate approach to dienes utilizes the allylphosphoranes. Metalation of allyldiphenylphosphine and then transmetalation with Ti(OPr^x) gives the titanium intermediate. Allyltitanation followed by stereospecific elimination would generate a composition enriched in the (Z)-diene.

On the other hand, when allyldiphenylphosphine oxide is subjected to a similar sequence (FIG. 8), the E-isomer is predominantly (75%) generated.

i) Allylboration of Acetyl CsA-CHO:

The (E)-l-trimethylsilyl-l-propene-3-boronate was prepared in accordance with previously reported methods (Ikeda et al, 1987). To a stirred solution of (E)-l- trimethylsilyl-l-propene-3-boronate (0.2 g, 0.832 mmol) in THF (3 mL) under nitrogen was added acetyl Cyclosporin A aldehyde (1.026 g, 0.832 mmol). The reaction mixture was monitored by high performance liquid chromatography (C-8 column, reverse phase) and stirred for a total period of 7 days. Then triethanolamine (0.196 g, 1.3 mmol) was added and stirring continued for a further period of 4 days. The β-trimethylsilyl alcohol was obtained by purification over a silica gel column. MS(ES) m/z 1368.9 (M + Na⁺).

To a suspension of KH (3.5 mg, 26.4 mol, 30% mineral oil dispersion washed with anhydrous hexanes) in anhydrous THF (1 mL) was added β-trimethylsilyl alcohol (10 mg, 7.4 micromole) and stirred at room temperature for 10 min. The reaction mixture was diluted with diethyl ether (10 mL) and then washed with saturated NaHC0₃ solution (2 5 mL). Drying (Na₂SO₄) and solvent removal furnished the enriched (Z)-acetyl- 1,3-diene. MS (ES) m/z 1294.8 (M + K⁺).

ii) Allyltitanation of Acetyl CsA-CHO:

To a stirred and cooled (-78° C) solution of allyldiphenylphosphine (0.54 g, 2.4 mmol) in anhydrous THF (8 mL) was added t-BuLi (1.42 mL, 2.4 mmol, 1.7 M solution, in pentane). The brick-red colored solution was stirred for 15 min at this temperature and then at 0 ° C for 30 min. It was then cooled again to -78° C and added Ti(OPr')₄ (0.71 mL, 2.4 mmol). The brown colored solution was stirred at this temperature for 15 minutes and then a solution of acetyl CsA-CHO (2.5 g, 2 mmol) in THF (10 mL) was added through a cannula. The pale-yellow colored solution was stirred for a further period of 30 minutes and then warmed to room temperature overnight. To the reaction mixture was added Mel (0.15 mL, 2.4 mmol) at 0° C. Stirring was continued for 1 h at this temperature and then at room temperature for 2 h. The reaction mixture was poured into ice-cold 1% HCl (100 mL). The aqueous layer was extracted with EtOAc (3 x 50 mL). The combined organic extract was washed with water (2 x 25 mL) and brine (25 mL). Removal of solvent gave a yellow solid which was chromatographed over a column of silica gel. Elution with 1:3 acetone-hexanes mixture furnished the (Z)-enriched isomer of acetyl ISAχχ247. Deprotection as in Example 4 gave (Z)-enriched isomer of ISAχχ247 (Z E ratio, 75:25).

Example 10: Preparation of an (E)-enriched Mixture of ISAτχ247 Isomers

To a solution of allyldiphenylphosphine oxide (lmmol) and hexamethylphosphoramide (2mmol) in tetrahydrofuran (5mL) at -78°C was added n- butyllithium (lmmol, in hexanes). The mixture was stirred at -78°C for 30 minutes. A solution of acetyl cyclosporin A aldehyde (0.8mmol) in tetrahydrofuran (7mL) was added and the reaction mixture allowed to gradually warm to room temperature and then stirred for 18 hours. The mixture was poured into ice-cold IN hydrochloric acid (50mL) and then extracted into ethyl acetate. The organic extract was washed with water, dried over magnesium sulfate and the solvent evaporated. The residue was chromatographed over silica gel using 25% acetone/75% hexanes as eluent to give a mixture of the (E) and (Z)-isomers of acetyl ISAχχ247. Removal of the acetate protecting group as described in Example 4 gave an (E)-enriched mixture of the ISAχχ247 isomers. Proton nmr spectroscopy indicated that the mixture was comprised of 75% of the (E) and 25% of the (Z)-isomer of ISAτχ247. This reaction was also carried out according to Schlosser's modification (R. Liu, M. Schlosser, Synlett, 1996, 1195). To a stirred and cooled (-78° C) solution of allyldiphenylphosphine oxide (1.21 g, 5 mmol) in THF (20 mL) was added n-BuLi (2 mL, 5 mmol, 2.5 M solution, in hexanes). The red-colored solution was stirred for 40 minutes at -78° C. A solution of acetyl CsA-CHO (1.25 g, 1.02 mmol) in THF (12 mL) was then added through a cannula during 15 minutes. The reaction mixture was stirred at room temperature for 2 hours. Workup and chromatography as above gave acetyl ISAχχ247 (Z:E ratio, 40:60 by ^!H NMR analysis). Example 11 : Preparation of Benzoyl-Protected Cyclosporin A

Cyclosporin A (6.01g, 5mmol) and 4-dimethylaminopyridine (305mg, 2.5mmol) were dissolved in pyridine (5mL). Benzoic anhydride (3.4g, 15mmol) was added and the mixture stirred for 19 hours at 50° C. Additional benzoic anhydride (1.7g, 7.5mmol) and DMAP (305mg, 2.5mmol) were added and stirring at 50° C continued for another 24 hours. Benzoic anhydride (0.85g, 3.8mmol) was added and the reaction stirred for an additional 23 hours. The reaction mixture was then poured slowly into water with stirring. Precipitated Cyclosporin A benzoate was filtered off and washed with water. The collected cake was dissolved in a minimum volume of methanol and added to a 10% citric acid solution and stirred for 1 hour. The precipitated product was collected by filtration and washed with water until the pH of the filtrate reached that of the water. The solid Cyclosporin A benzoate was dried at 50 °C under vacuum to give a colorless solid.

Example 12: Preparation of Triethylsilyl ether-Protected Cyclosporin A

Cyclosporin A (3.606g, 3mmol) was dissolved in dry pyridine (8mL) and then DMAP (122mg, lmmol) was added. The reaction mixture was cooled to 0°C and then triethylsilyl trifluoromethanesulfonate (3.6mmol) added dropwise. The mixture was allowed to warm to room temperature and stirred overnight. The reaction mixture was then poured slowly into water with stirring. The precipitated triethylsilyl ether was filtered off and washed with water. The collected cake was dissolved in a minimum volume of methanol and added to a 5% citric acid solution and stirred for 30 minutes. The precipitated product was collected by filtration and washed with water until the pH of the filtrate reached that of the water. The solid triethylsilyl ether was dried at 50°C under vacuum to give a colorless solid. Triisopropylsilyl and tert-butyldimethylsilyl protecting groups were also introduced by following an analogous procedure.

Example 13: Immunosuppressive Activity Using the Calcineurin Inhibition Assay

An indicator of the efficacy of cyclosporine A or a cyclosporine A derivative is its ability to inhibit the phosphatase activity of calcineurin. The calcineurin inhibition assay measures the activity of the drug at its site of action and as such is the direct in vitro assessment of the potency of cyclosporine A analogues (Fruman et al., 1992). The immunosuppressive activity of ISAχχ247 (45-50% of E-isomer and 50-55% of Z- isomer) versus cyclosporine A has been assessed using the calcineurin (CN) inhibition assay. The results of this assay show that the inhibition of calcineurin phosphatase activity by ISAτχ247 (45-50% of Z-isomer and 50-55% of E-isomer) was up to a 3-fold more potent (as determined by IC₅₀) as compared to cyclosporine A (Figure 11).

The immunosuppressive activity of various deuterated and non-deuterated isomeric analogue mixtures versus cyclosporine A has been assessed using the calcineurin (CN) inhibition assay. The structure and isomeric composition of these analogues is set forth in Figure 12. In Figure 12, the designation "14" corresponds to the structure of ISAτχ247. 14- M2 denotes ISAχχ247 produced by the method described in Examples 5-8 (designated Method 2 in this figure). I4-D4 denotes deuterated ISAχχ247 produced by the method described in Examples 1-4. I4-D2 denotes deuterated ISAχχ247 produced by the method described in Examples 5-8. Other isomeric mixtures are as shown in the figure.

The results of this assay show that the inhibition of calcineurin phosphatase activity by these isomeric analogue mixtures was at least as potent (as determined by IC₅o) as compared to cyclosporine A (Figure 13). CsA denotes Cyclosporine A; Isocyclo4 denotes ISAτχ247 produced by the method described in Examples 1-4. Isocyclo5 corresponds to 15- Ml of Figure 12. Isocyclo4-d4 corresponds to I4-D4 of Figure 12. Isocyclo5-d5 corresponds to I5-D5 of Figure 12. Isocyclo4-d2 corresponds to I4-D2 of Figure 12. Isocyclo4-M2 corresponds to I4-M2 of Figure 12. Isocyclo5-m2 corresponds to I5-M5 of Figure 12.

Example 14: Immunosuppressive Activity Using the Rat Heart Transplant Model

The efficacy of ISAτχ247 (45-50% of E-isomer and 50-55% of Z-isomer) in preventing the rejection of hearts transplanted between different strains of rats was assessed and compared to that of cyclosporine A. The rat heart transplant model has been the most frequently used model to assess the in vivo potency of new immunosuppressive drugs, as prolonged graft survival is difficult to achieve in this model due to immune rejection.

The procedure involved the heterotopic transplantation (to the abdominal aorta and inferior vena cava) of the heart from Wistar Furth rats to Lewis rats. Intraperitoneal injections of either cyclosporine A or an isomeric analogue mixture were given to the transplant recipient starting 3 days prior to transplantation and continuing for 30 days post- transplantation. If graft dysfunction was noted during the 30-day post-transplantation period, the animal was sacrificed. If the animal survived longer than 30 days post-transplantation, the test and control articles were discontinued and the animal was allowed to continue until graft dysfunction or up to 100 days post-transplantation.

The average survival rates for each group of recipient animals are summarized in Table 1. These results show that ISAχχ247 (45-50% of E-isomer and 50-55% of Z-isomer) at an optimal dose of 1.75 mg/kg day increased survival time approximately 3-fold over Cyclosporine A. A number of animals receiving ISAχχ247 still had functioning grafts at 100 days post- transplant (70 days post discontinuation of dosing). These data demonstrate the immunosuppressive activity of this isomeric analogue mixture in preventing graft rejection.

Table 1 Effect of ISA_TX247 and Cyclosporine A Given by

Intraperitoneal Administration on the Average Survival Times of Transplanted Rat Hearts [averaged from two separate studies, n 13]

Dose Average Survival Time (days post-operative)

(mg/kilogram/day) Mean ± SEM (scanning electron microscope)

Vehicle Control Cyclosporine A ISAχχ247

0 9 ±ϊ

0.5 13^a ± 4 ll^a ± 2

1.75 18 ± 7 57^b ± 32

3 50^c ± 8 55^c ± 12 a,c Not significantly different ^b Significantly different (p<0.01)

The efficacy of various deuterated and non-deuterated isomeric analogue mixtures (structures given in Figure 12) in preventing the rejection of hearts transplanted between different strains of rats was also assessed and compared to that of cyclosporine A. Doses were at 1.75 mg/kg/day for 30 days. Results are summarized in Table 2. These results show that the isomeric mixtures at 1.75 mg/kg/day increased survival time at least as much as Cyclosporine A and demonstrate the immunosuppressive activity of these isomeric analogue mixtures in preventing graft rejection.

Table 2 Effect of Various Isomeric Analogue Mixtures and

Cyclosporine A Given by Intraperitoneal Admimstration at 1.75 mg/kg/day on the Average Survival Times of Transplanted Rat Hearts

Test Compound Average Survival Time (days postoperative)

Vehicle Control 9

Cyclosporine A 20

I5-M1 20

I4-M2 20+

I4-D2 30

Example 15: Immunosuppressive Activity in Islet Cell Allotransplantation

The ability of ISA_Tχ247 (45-50% of E-isomer and 50-55% of Z-isomer) versus cyclosporine A to prolong the survival of transplanted islet cells in a mouse model was investigated in a study involving the transplant of 500 islets from a CBA/J mouse into the renal capsule of diabetic Balb/c mouse recipients.

Following transplantation, ISAτχ247 or cyclosporine A was administered by intraperitoneal (i.p.) injection at a dose level of 0 (vehicle), 1.75, 10, 20, or 25 mg kg/day for a total of 30 days. Blood glucose was monitored daily until the time of graft failure, as defined by a glucose level greater than 17 mmol L on two consecutive days.

The results indicate that ISAτχ247 increased the length of graft survival by 40% at a dose of 20 mg/kg/day (Table 3). It was also noted that ISAχχ247 was less toxic than cyclosporine A as the dose level increased. This was especially apparent at the 25 mg/kg/day dose level. Table 3 The Survival of Mouse Islet Allografts in Diabetic Mice Receiving Either ISA_Tχ247 or Cyclosporine A by Intraperitoneal Injection at a Dose Level of 1.75, 10, 20, or 25

1.75 ¹ CsA 9 ! 17 1 17.4

1.75 ISA ^'. 9 ; 18 18.7

10 i CsA 6 21 ^; 25.3

10 [ ISA 5 18 19.2

0 j Vehicle 12 16 15.9

20 ' CsA 9 19 20.2

20 ISA 9 >28 >28

0 Vehicle ; 5 21 21.1

25 CsA 10 ND^* ND*

25 ISA 8 50 46.4

7 out of the 10 animals m this group died of CsA toxicity. Therefore, only 3 animals completed in this group and no statistics were done.

Example 16: Immunosuppressive Activity in Arthritis

Over the course of the past three decades, three animal models of human rheumatoid arthritis have been extensively examined and widely employed in the preclinical screening and development for novel anti-rheumatic agents. These include the adjuvant-induced, collagen-induced, and antigen-induced arthritis models. The following studies were designed to evaluate anti-inflammatory efficacy of ISAχχ247 (45-50% of E-isomer and 50-55% of Z- isomer) in both the collagen-induced arthritis model in the mouse and the antigen-induced arthritis model in the rabbit. The histopathology and immunopathology observed in these two models resemble the findings in the human disease. In both models, the efficacy of ISAτχ247 to prevent the onset of arthritis (prevention protocol) and to treat arthritis (treatment protocol) was examined. These studies support the immunosuppressive action of the claimed isomeric analogue mixtures. A. Collagen-Induced Arthritis

Male DBA/1 Lac J mice, kept under virus antibody free conditions, were immunized subcutaneously at 8 to 10 weeks of age with 100 microgram of chick type II collagen, emulsified in Freund's complete adjuvant. ISAχχ247, cyclosporine A, or vehicle (Chremophor EL/ethanol 72:28, volume/volume) were administered daily by intraperitoneal (i.p.) injection of 1- to 50-fold dilutions of stock drug (0.25, 0.5, or 1 mg/mL) into saline to yield concentrations of 0 (vehicle); 125, 250, or 500 μg/mouse for ISAχχ247; and 250, or 500 μg/mouse for cyclosporine A. Animals assigned to the prevention protocol (12/group) were dosed starting on the day of immunization with collagen (Day 0) until sacrifice on Day 40. Animals assigned to the treatment protocol (12/group) were dosed starting on the day of disease onset (~Day 28) until sacrifice on Day 38.

Evaluated parameters included mortality, serum creatinine, histology, and outcome assessments, such as clinical scoring (visual), hind paw swelling, histological scoring, erosion scoring, and immunohistochemistry.

Erosion scoring was done in a blinded manner by examining sagittal sections of the proximal interphalangeal (PIP) joint of the middle digit for the presence or absence of erosions (defined as demarcated defects in cartilage or bone filled with inflammatory tissue). This approach allowed for comparisons of the same joint. Previous studies have demonstrated erosions in >90% of untreated arthritic animals in this joint.

The results indicate that the negative erosion scores in the ISAχχ247 high-dose treatment group (500 μg/mouse) were significantly higher than the negative erosion scores in the vehicle treatment group (p<0.05). Both the mid-dose ISAχχ247 (250 μg/mouse) and high-dose cyclosporine A (500 μg/mouse) treatment groups had higher negative erosion scores as compared to the vehicle treatment group (p<0.1). Furthermore, the low-dose ISAτχ247 (125 μg/mouse) and mid-dose cyclosporine A control (250 μg/mouse) treatment groups have higher, although not statistically significant, negative erosion scores when compared to the vehicle control group. The only treatment to significantly prevent the development of joint erosions was ISA_Tχ247 at 500 μg/mouse. This significant reduction in the proportion of the PIP joints showing erosive changes in the ISAχχ247-treated mice relative to the vehicle control group mice demonstrates that ISAχχ247 has disease-modifying properties.

B. Antigen-Induced Arthritis

New Zealand White rabbits, maintained under specific pathogen free conditions, were immunized with 10 mg of ovalbumin in saline emulsified with Freund's complete adjuvant that was given intramuscularly and subcutaneously into several sites in the nape of the neck. Fourteen days later, all animals started receiving 2 daily intra-articular injections of 5 mg ovalbumin and 65 ng of human recombinant transforming growth factor 2 in saline.

ISAχχ247, cyclosporine A, or vehicle (Chremophor EL/ethanol 72:28, V/V) were administered daily by subcutaneous injection of 1- to 4-fold dilutions of stock drug (in vehicle) into saline to yield concentrations of 0 (vehicle); 2.5, 5.0, or 10 mg/kg/day for ISAχχ247; and 5.0, 10, or 15 mg/kg/day for cyclosporine A. Animals assigned to the prevention protocol (8/group) were dosed starting on the day of immunization with ovalbumin (Day 0) until sacrifice on Day 42. Animals assigned to the treatment protocol (8/group) were dosed starting on the day of disease onset (~Day 28) until sacrifice on Day 42.

Evaluated parameters included mortality, body weight, serum creatinine, histology, and outcome assessments such as knee joint swelling, synovial fluid counts, gross postmortem analysis, and histology.

A significant decrease in synovial histopathological scores was observed in ISAχχ247 (P 0.05 ) and cyclosporine A (P 0.05) animals after 28 days of therapy (prevention protocol) compared to vehicle control animals. This was accompanied by significant reductions in synovial fluid counts (ISAχχ247, P 0.05; cyclosporine A, P 0.05). Significant amelioration in synovial histopathological scores of animals with established arthritis was also evident following 14 days of treatment with ISAχχ247 (P 0.05) and cyclosporine A (P 0.05) compared to vehicle controls (treatment protocol). A significant reduction in macroscopic arthritis score was evident in ISAχχ247 (P=0.01), but not in cyclosporine A treated animals. Treatment was well tolerated with no significant toxicity upon analysis of serum creatinine or post-mortem histology.

The data show that ISAχχ247 is equivalent or potentially more potent than cyclosporine A in the treatment and prevention of rheumatoid arthritis in an antigen-induced arthritis model in the rabbit.

Example 17: Pharmacokinetic and Toxicokinetic Properties

The pharmacokinetic and toxicokinetic parameters of ISAχχ247 (45-50% of E-isomer and 50-55% of Z-isomer) and cyclosporine A were tested in a rabbit model. The rabbit has also been used as a model to study cyclosporine A nephrotoxicity, but far less frequently than the rat. Studies have found that cyclosporine A administered to the rabbit causes structural and functional changes at a dose not only lower than has been previously reported in other animal models, but also within at least the upper level of the therapeutic range in humans (Thliveris et al, 1991, 1994). Also, the finding of interstitial fibrosis and arteriolopathy, in addition to the cytological changes in the tubules, suggests that the rabbit is a more appropriate model to study nephrotoxicity, since these structural entities are hallmarks of nephrotoxicity observed in humans. ISAχχ247 was administered intravenously (i.v.) for the first 7 days and subcutaneously (s.c.) for an additional 23 days according to the following schedule.

Table 4 The Dose Administration Schedule for the Investigation of the

Pharmacokinetic and Toxicokinetic Properties of ISAχχ247 in the Rabbit Model

Treatment Group Days 1-7: Days 8-30: Number of Animals i.v. Dose s.c. Dose

(mg/kg) (mg kg)

Males Females

1. Vehicle Control 0 0 4 4

2. Cyclosporine A 10 10 6 6

Control

3. Low-Dose 5 5 0 2

4. Medium-Dose 10 10 4 4

5. High-Dose 15 15 4 4 Pathogen free rabbits (SPF) were used to ensure any renal changes observed were due to the effect of ISAχχ247 and not due to pathogens. On Days 1 and 7, blood samples were collected prior to drug administration and at 0.5, 1, 2, 4, 8, 12, 18, and 24 hours post-dose to generate a pharmacokinetic profile. Other evaluated parameters included clinical observations, body weight, food consumption, hematology, clinical chemistry, gross pathology, and histopathological examination of selected tissues/organs.

Blood samples were analyzed via high performance liquid chromatography coupled with mass spectrometry (LCMS). Table 5 below summarizes the average pharmacokinetic parameters in rabbits that received 10 mg/kg of cyclosporine A or ISAχχ247.

Table 5 Pharmacokinetic Parameters of Intravenously Administered Cyclosporine A and ISAχχ247 in Male Rabbits Receiving 10 mg/kg/day. Results expressed as mean ± SD

Measured Parameter Cyclosporine A ISAτχ247

Da l Day 7 Day l Day 7 t_max (hours) 0.5 0.5 0.5 0.5

C a (μg/L) 1954 + 320 2171 ± 612 1915 + 149 1959 + 470 (hours) 7.4 ± 2.8 9.0 ± 4.0 7.4 ± 1.7 9.2 + 1.1

Area under the curve 6697 ± 1717 6685 ± 1247 5659 ± 1309 5697 + 1373 (μg≡hr/L)

There were no statistically significantly differences between the pharmacokinetic parameters of cyclosporine A and ISAχχ247 in male rabbits receiving 10 mg/kg/day. The pharmacokinetic parameters of ISAχχ247 in female rabbits receiving the same dose were not significantly different from that observed in the male rabbits, with the exception of maximum concentration on Day 7.

No significant changes were noted in the hematological parameters of rabbits receiving a vehicle control, cyclosporine A, or ISAχχ247. A difference was noted in the creatinine levels in the various groups over the course of the study, as is shown in Table 6 below. These differences indicated that cyclosporine A had a significantly greater negative effect on the kidneys than either the vehicle control or ISAχχ247. It should be noted that even at a 50 % higher dose, 15 mg/kg/day, as compared to 10 mg/kg/day cyclosporine A, ISAχχ247 did not result in any significant increase in serum creatinine levels.

Table 6 Percent Change in Serum Creatinine Levels Over Baseline in Male

Rabbits Receiving Vehicle, Cyclosporine __ i, or ISA_TX247 1

Days

Treatment Group Day 15 Day 30

Vehicle + 6% - 3%

Cyclosporine A (lOmg/kg) +22% +33%

ISA_TX247 (lOmg/kg) +1% +10%

ISAχχ247 (15mg/kg) - 19% - 11%

Examination of organs in all rabbits receiving the vehicle control, 10 mg/kg cyclosporine A, 5 mg/kg ISAχχ247, or 10 mg/kg ISAχχ247 revealed no significant abnormalities. This was especially true for the kidneys, in which no evidence of interstitial fibrosis, normally seen in cyclosporine A-treated animals (Thliveris et al, 1991, 1994) was noted. In male rabbits that received 15 mg/kg ISAχχ247, a decrease in spermatogenesis was noted. No changes were noted in the 3 female rabbits that completed the study at this dose of 15 mg/kg ISA_TX247.

Example 18: Immunosuppressive Effects of ISAχγ247

Whole blood from cynomolgous monkeys (n=4) was incubated with ISAχχ247 or cyclosporine and stimulated with different mitogens in culture medium. Lymphocyte proliferation was assessed by tritium-labeled thymidine incorporation and by flow-cytometric analysis of expression of proliferating cell nuclear antigen (PCNA) on cells in SG₂M phase. Flow cytometry was also used to assess production of intracellular cytokines by T cells and expression of T lymphocyte activation antigens. The EC₅₀ (concentration of drug necessary to attain 50% of the maximum effect) was subsequently calculated using the WinNonlin™ software. Results showed that lymphocyte proliferation, cytokine production, and expression of T cell surface antigens were inhibited more potently by ISAχχ247 than by cyclosporine, as shown by the EC₅o (expressed in ng/mL) set forth in Table 7 below. Table 7

Thus, using an ex vivo whole blood assay we have found that ISAχχ247 suppresses diverse immune functions 2.3 - 6 times more potently than cyclosporine.

Example 19: Wittig Reaction Using Tributyl Allyl Phosphonium Bromide

Potassium tert butoxide (0.31 g, 2.8 mmol) was dissolved in 20 mL of tetrahydrofuran. At about -40 °C tributyl allyl phosphonium bromide (0.99 g, 3.1 mmol) dissolved in 3 mL of tetrahydrofuran was slowly added. The resulting yellow mixture was stirred for about 10 minutes at about -40 °C before a solution of acetyl cyclosporin A aldehyde (1.5 g, 1.2 mmol) in 6 mL of tetrahydrofuran was slowly added. After stirring the yellow-orange reaction mixture for 1.5 hours the reaction was complete. For quenching the reaction mixture was transferred onto aqueous phosphoric acid (1.2 g, 1.0 mmol). The resulting aqueous solution was extracted with 100 mL of toluene followed by 50 mL of toluene. The combined organic layers were washed with water and concentrated under reduced pressure to dryness. The product, acetylated ISAχχ247, was obtained as a slightly yellow solid in approximately 90% yield. The isomer ratio was about 87% E-isomer and about 13% Z-isomer (as determined by ^-NMR spectroscopy).

Example 20: Wittig reaction using tributyl allyl phosphonium bromide and a lithium base

Tributyl allyl phosphonium bromide (1.38 g, 4.3 mmol) was dissolved in a mixture of 20 mL of toluene and 3 mL of tetrahydrofuran. At about -78 °C butyllithium (1.6 M in hexane, 2.43 mL, 3.9 mmol) was slowly added. The resulting yellow mixture was stirred for about 10 minutes at about -78 °C before a solution of acetyl cyclosporin A aldehyde (1.5 g, 1.2 mmol) in 6 mL of toluene was slowly added. After stirring the yellow-orange reaction mixture for 3.5 hours the reaction was quenched by transferring the reaction mixture onto a mixture of 50 mL toluene and aqueous phosphoric acid (0.25 g, 2.2 mmol). The resulting biphasic mixture was allowed to warm to ambient temperature before the two layers were separated. The toluene layer was washed with 20 mL water and concentrated under reduced pressure to dryness. The product, acetylated ISAχχ247, was obtained as a slightly yellow solid in approximately 80% yield. The isomer ratio was about 70% E-isomer and about 30% Z-isomer (as determined by 1H-NMR spectroscopy).

Example 21: Wittig reaction using tributyl allyl phosphonium bromide and a lithium base

Running SAP018 as described above but only at about -40 °C. The experimental conditions of Example 20 were repeated, this time using a reaction temperature of about -40°C. Under these conditions the isomeric ratio of the isolated product, acetylated ISAχχ247, was about 74% by weight of the E-isomer, and to about 26% by weight of the Z- isomer, as determined by ^-NMR-spectroscopy.

Example 22: Wittig reaction using tributyl allyl phosphonium bromide

A solution of acetyl cyclosporin A aldehyde (1.5 g, 1.2 mmol) and tributyl allyl phosphonium bromide (0.99 g, 3.1 mmol) in 15 mL of tetrahydrofuran was cooled to about - 80°C. Potassium tert-butoxide (0.19 g, 1.7 mmol) dissolved in 9 mL of tetrahydrofuran was slowly added. The resulting yellow mixture was stirred for one hour at about -80°C to complete the reaction before a solution of 6 mL of tetrahydrofuran was slowly added. After stirring the yellow-orange reaction mixture for 1.5 hours the reaction was complete. For quenching the reaction mixture aqueous phosphoric acid (0.15 g, 1.3 mmol) was added. The resulting mixture was concentrated and the residue was dissolved in 5 mL of methanol. Then the mixture was slowing added to 5 mL of water. The resulting precipitate was filtered, washed with 4 mL of methanol/water (1/1), and dried in vacuo. The product, acetylated ISAχχ247, was obtained as a colorless solid in approximately 90% yield. The isomer ratio was about 91% by weight E-isomer and 9% by weight Z-isomer (determined by ^]H-NMR- spectroscopy). Example 23: Ozonolysis of acetyl CsA

A solution of acetyl cyclosporin A (15 g, 12.1 mmol) in 200 mL of methanol was ozonised at -78°C using a Sander ozone generator at about 1.1 bar with a cunent flow of 300 L O^hour until the reaction was complete (about 5 minutes). The solution was gassed with argon and quenched with dimethylsulfide dissolved in methanol. For completing the reduction the mixture was stirred overnight at room temperature. After concentration to about 50 mL the solution was slowly added to 500 mL of water. The resulting precipitate was filtered, washed with 60 mL of water and dried in vacuo. The product, acetylated CsA aldehyde, was obtained as a colorless solid in approximately 95% yield and a purity of about 98% (determined by HPLC).

Example 24: Preparation of trimethylsilyl-protected Cyclosporine A

Cyclosporine A (40 g, 1 equivalent) was dissolved in dichloromethane (100 ml) at 30°C. N,N-bis-(trimethylsilyl) urea (1.1 equivalent) was added. After 5 minutes stining at 30°C, p-toluenesulfonic acid (0.02 equivalents) was added. The reaction mixture was heated at reflux until completion of the reaction, as measured by thin layer chromatography (TLC), high pressure or high performance liquid chromatography (HPLC) or mass spectroctrometry (MS) and then cooled to room temperature. Half saturated aqueous sodium bicarbonate solution (100 ml) was added. The aqueous phase was separated and re-extracted with dichloromethane. The combined organic phases were dried over anhydrous Na₂SO₄ and filtered. The solvent was removed under reduced pressure providing the crude trimethylsilyl- protected Cyclosporine A.

Example 25: Preparation of trimethylsilyl-protected Cyclosporine A aldehyde

Trimethysilyl-protected Cyclosporine A (5 g, 1 equivalent) was dissolved in dichloromethane (50 ml). The solution was then cooled to a temperature of about -78 °C, after which ozone was bubbled through the solution until the appearance of a blue color. Next, argon was bubbled through the solution until a colorless solution was obtained in order to remove excess ozone it became colorless; this step was carried out to remove excess ozone. Triethylamine (5 equivalents) was added and the reaction mixture was stirred at room temperature for 17 hours. The trimethylsilyl-protected Cyclosporine A aldehyde was obtained after aqueous work-up. Example 26: Preparation of a 3: 1 mixture of Z to E double bond isomers of trimethylsilyl- protected Cyclosporine A diene via Wittig reactions

To a mixture of potassium tert-butoxide (3 equivalents) and allyl triphenylphosphonium bromide (2 equivalents) in toluene (10 ml) previously stirred for 60 minutes, was added the trimethylsilyl-protected Cyclosporine A aldehyde (1 g, 1 equivalent). Work-up of the reaction mixture after 1 hour reaction at room temperature provided a 3: 1 mixture (by NMR) of Z and E double bond isomers of the trimethylsilyl- protected Cyclosporine A diene.

Example 27: Preparation of a 1 : 1 mixture of Z to E double bond isomers of trimethylsilyl- protected Cyclosporine A diene via Wittig reactions

The trimethylsilyl-protected Cyclosporine A aldehyde (2.5 g) was dissolved in 25 ml of toluene and treated with IN aqueous sodium hydroxide solution (10 equivalents). The reaction mixture was vigorously stirred and allyltriphenylphosphonium bromide (7.5 equivalents, portionwise) was added. Work-up of the reaction mixture after several hours reaction at room temperature provided a ca 1 : 1 mixture (by NMR) of Z and E double bond isomers of the trimethylsilyl-protected Cyclosporine A diene.

Example 28: Preparation of a 1:2 mixture of Z to E double bond isomers of trimethylsilyl- protected Cyclosporine A diene via Wittig reactions

The trimethylsilyl-protected Cyclosporine A aldehyde (1 g) was dissolved in 5 ml of toluene together with potassium carbonate (1.5 equivalent) and allyltriphenylphosphonium bromide (1.5 equivalent). Work-up of the reaction mixture after 4 hours reaction at reflux under vigorous stirring provided a ca 1:2 mixture (by (NMR) of Z and E double bond isomers of the trimethylsilyl-protected Cyclosporine A diene.

Example 29: Preparation of a 1 :3 mixture of Z to E double bond isomers of trimethylsilyl- protected Cyclosporine A diene via Wittig reactions

AUyltributylphosphonium bromide (3 equivalents, prepared from allylbromide and tributylphosphine) was dissolved in THF (3.5 ml). Toluene (7.5 ml) was added followed by potassium tert-butoxide (4 equivalents). After 1 hour stirring at room temperature, the solution was cooled to ca -30 °C. A solution of the trimethylsilyl-protected Cyclosporine A aldehyde (1 g, 1 equivalent) in toluene (5 mL) was added dropwise. After 45 minutes at about -30 °C, the reaction mixture was worked up, providing an approximately 1:3 mixture (by NMR) of Z and E double bond isomers of the trimethylsilyl-protected Cyclosporine A diene.

The following two examples, Examples 30 and 31, are directed to allylmetallations.

Example 30: Preparation of acetyl-protected Cyclosporine A β-trimethylsilylalcohol

To a solution of allyltrimethylsilane (10.1 equivalents) in THF (15 ml) was added butyl lithium (1.6 M in hexanes, 10 equivalents) at room temperature. After 30 minutes reaction, the solution was cooled to -75 °C, and treated with diethyl-B-methoxyborane (10.1 equivalents). After 1 hour, borontrifluoride diethylether complex (10.1 equivalents) was added to generate the B-(γ-trimethylsilyl-allyl)-diethylborane reagent. After 1 hour, a solution of acetyl-protected Cyclosporine A aldehyde (5 g, 1 equivalent) in THF (15 ml) was added dropwise. After 20 minutes, the reaction mixture was warmed to -10 °C and a saturated aqueous NH4CI solution was added. After stirring one hour at room temperature, water (45 ml) was added and the reaction mixture was extracted 3 times with 25 ml ethyl acetate. The organic phases were washed sequentially with water (25 ml) and a saturated aqueous NEUC1 solution (25 ml). The combined organic phases were dried over Na₂SO₄, filtered, and concentrated under reduced pressure. The crude product was chromatographed (Silicagel, dichloromethane/methanol or ethyl acetate/heptane) to yield the acetyl-protected Cyclosporine A β-trimethylsilylalcohol.

Example 31: Preparation of trimethylsilyl-protected Cyclosporine A β-trimethylsilylalcohol

To a solution of allyltrimethylsilane (10.1 equivalent) in THF (15 ml), was added butyl lithium (1.6 M in hexanes, 10 equivalents) at room temperature. After allowing the reaction to proceed for about 30 minutes, the solution was cooled to -65 °C, and treated with diethyl-B-methoxyborane (10.1 equivalents). After 1 hour, borontrifluoride diethylether complex (10.1 equivalents) was added to generate the B-(γ-trimethylsilyl-allyl)-diethylborane reagent. After 1 hour, a solution of trimethylsilyl-protected Cyclosporine A aldehyde (5 g, 1 equivalent) in THF (15 ml) was added dropwise. After 15 minutes, the reaction mixture was warmed to 10°C and a saturated aqueous NH4CI solution was added. After [1 hour] stirring for one hour at room temperature, water (12.5 ml) and saturated NaHCO₃ (25 ml) were added. The reaction mixture was extracted twice with 25 ml methyl-t-butyl ether. The organic phases were washed twice sequentially with water (2 x 25 ml) and a saturated aqueous NaCI solution (25 ml). The combined organic phases were dried over Na₂S0₄, filtered, and concentrated under reduced pressure. The crude product was chromatographed (Silicagel, heptane/ethyl acetate) to yield the trimethylsilyl-protected Cyclosporine A β- trimethylsilylalcohol .

The following three examples, Examples 32, 33, and 34, are directed to Peterson elimination reactions.

Example 32: Preparation of E-acetyl-protected Cyclosporine A diene

The acetyl-protected Cyclosporine A β-trimethylsilylalcohol (10 g, 1 equivalent) was dissolved in THF (50 ml). Concentrated H₂S0 (1.24ml, 3 equivalent) was added and the reaction mixture was stined for 20 h at room temperature. Water (150 ml) was added and the reaction mixture was extracted with methyl-t-butyl ether (200 ml). The aqueous phase was re-extracted with methyl-t-butyl ether (150 ml). The organic phases were washed with water (150 ml). The combined organic phases were dried over Na₂SO₄, filtered and concentrated under reduced pressure to give the crude acetyl-protected Cyclosporine A diene (acetyl- protected ISAχχ247). The crude product was crystallized from methyl-t-butyl ether/THF and then recrystallized from methyl-t-butyl ether/DCM to give acetyl-protected Cyclosporine A diene (acetyl-protected ISAχχ247) as a 99-97%: 1-3% mixture of E and Z double bond isomers (by 400MHzNMR, 2% enor of measurement).

Hydrolysis of E-acetyl-protected Cyclosporine A diene was conducted as follows: Acetyl Cyclosporine A diene (4g, 1 equivalent) was dissolved in methanol (80 ml) and water (32 ml). Potassium carbonate (3.65g, 8.3 equivalent) was added. After stirring for 15 hours at room temperature, the reaction mixture was heated up to 40°C for 4 hours. The reaction mixture was concentrated under reduced pressure and the residue was taken up in ethyl acetate (70 ml). Aqueous citric acid solution 15% (30 ml) was slowly added followed by water (10 ml). The aqueous layer was separated and re-extracted with ethyl acetate (56 ml). The organic phases were washed with water (30 ml), 15% citric acid solution (40 ml) and saturated NaCI solution (30 ml). The organic layers were combined, dried over Na₂SP and concentrated under reduced pressure to give Cyclosporine A diene (ISAχχ247) as a 98:2 E/Z mixture of double bond isomers (by 400MHz NMR, ca 2-3% enor). See R.W. Hoffmann, Angewandte Chemie International Edition, Vol. 555 (1982); W.R. Roush, "Allylorganometallics," Comprehensive Organic Synthesis, Pergamon Press, Vol. 2, pp. 1-53; and Y. Yamamoto, N. Asao, Chemical Reviews, p. 2307 (1993).

Example 33: Preparation of Z-trimethyisilyl-protected Cyclosporine A diene and its conversion to Z-Cyclosporine A diene (ISA γ247)

The trimethylsilyl-protected Cyclosporine A β-trimethylsilylalcohol (2 g, 1 equivalent) was dissolved in THF (20 ml). The solution was cooled to 0-2 °C and potassium t-butoxide (4 equivalents) was added. After 1.5 hours reaction, ethyl acetate (20 ml) and water (40 ml) were added. The aqueous layer was separated and re-extracted with ethyl acetate (20 ml). The organic phases were washed with a saturated aqueous NaCI solution (20 ml). The combined organic phases were dried over Na₂SO₄, filtered, and concentrated under reduced pressure to give a mixture of Z-trimefhylsilyl-protected Cyclosporine A diene

(trimethylsilyl-protected ISA_TX247), and Z-Cyclosporine A diene (the Z-isomer of

ISA_TX247). The desilylation was completed by dissolving the crude product mixture in methanol (10% by weight in the solution) and adding a 1 M aqueous hydrochloric acid solution (1 equivalent). After 15 minutes at room temperature, water and ethyl acetate were added. The aqueous layer was separated and re-extracted with ethyl acetate. The organic phases were washed with a saturated aqueous NaCI solution. The combined organic phases were dried over Na₂SO₄, filtered, and concentrated under reduced pressure, providing

Cyclosporine A diene (ISAχχ247) as a 94:6 mixture of Z and E double bond isomers (by

NMR).

Example 34: Preparation of E-Cvclosporine A diene (ISAτχ247)

The trimethylsilyl-protected Cyclosporine A β-trimethylsilylalcohol (500 mg, 1 equivalent) was dissolved in dichloromethane. This solution was cooled within a range of about 0-2 °C, and treated with borontrifluoride diethylether complex (5 equivalents). After 1 hour, water (20 ml) and dichloromethane (20 ml) were added. The organic layer was separated and washed with water (20 ml), dried over Na₂SO₄, filtered, and concentrated under reduced pressure to provide directly Cyclosporine A diene (ISAχχ247) as a 91:9 mixture by weight of the E and Z double bond isomers (by NMR). Example 35: Deprotection of trimethylsilyl-protected Cyclosporine A diene

Trimethylsilyl-protected Cyclosporine A diene was dissolved in methanol (10% by weight in the solution). This solution was treated with 1 M aqueous hydrochloric acid solution (1 equivalent). After 15 minutes at room temperature, water and ethyl acetate were added. The aqueous layer was separated and re-extracted with ethyl acetate. The organic phases were washed with a saturated aqueous NaCI solution. The combined organic phases were dried over Na₂S0 , filtered and concentrated under reduced pressure, providing Cyclosporine A diene (ISAχχ247).

Example 36: Epoxidation of acetyl cyclosporin A

Acetyl cyclosporine A (2.0 g, 1.61 mmol) was dissolved in acetonitrile (30 mL). 1,3- Diacetoxy-acetone (0.14 g, 0.8 mmol) was added, followed by 0.0004 M aqueous ethylenediaminetetra-acetic acid disodium salt (20 mL) and sodium bicarbonate (0.405 g, 4.82 mmol). To the stined mixture, oxone (43.8% KHSO₅) (2.23 g, 6.43 mmol) was added portionwise over 2 hours. The pH was maintained at 8.2 by constant addition of 1 N NaOH (total amount 6.4 mL) using a pH stat. The temperature was kept at 22-25 °C by occasional cooling using a cold water bath. After 2.5 hours the reaction mixture was quenched by a few drops of a sodium bisulfite solution. Water (100 mL) was added and the mixture was extracted twice with tert-butyl methyl ether (100 mL, then 75 mL). The organic extracts were washed with dilute aqueous sodium chloride (100 mL), combined, dried over Na₂SO₄, and concentrated to afford crude acetyl cyclosporin A epoxide (1.92 g, 95%; HPLC: 99.4% area) as a white solid foam.

Example 37: Preparation of acetyl cyclosporin A aldehyde

Crude acetyl cyclosporin A epoxide (1.92 g, 1.52 mmol) was dissolved in acetonitrile (25 mL). Water (20 mL) was added, followed by sodium periodate (489 mg, 2.28 mmol) and 0.5 M sulfuric acid (3.05 mL, 1.52 mmol). The reaction mixture was stined at 40 °C for 18 hours, then the excess sodium periodate was quenched by addition of aqueous sodium bisulfite. Dilute aqueous sodium chloride (100 mL) was added and the mixture was extracted twice with tert-butyl methyl ether (100 mL each). The organic extracts were washed with dilute aqueous sodium chloride (100 mL), combined, dried over Na₂SO , and concentrated to afford crude acetyl cyclosporin A aldehyde (1.74 g, 92%; HPLC: 95.7% area) as a white foam. The crude product was chromatographed over silica gel using 40% acetone/60% hexane as eluent to give the product (1.41 g, 71% based on acetyl cyclosporin A; HPLC: 100% area) as a white solid foam.

Example 38: Preparation of acetyl cyclosporin A aldehyde using a one-pot procedure

Acetyl cyclosporin A (2.0 g, 1.61 mmol) was dissolved in acetonitrile (30 mL). 1,3- Diacetoxy-acetone (0.084 g, 0.48 mmol) was added, followed by 0.0004 M aqueous ethylenediaminetetra-acetic acid disodium salt (20 mL) and sodium bicarbonate (0.405 g, 4.82 mmol). To the stined mixture, oxone (43.8% KHSO₅) (1.67 g, 4.82 mmol) was added portionwise over 2 hours. The pH was maintained at 8.2 by constant addition of 1 N NaOH (total amount 3.4 mL) using a pH stat. The temperature was kept at 20-25 °C. After 3.5 hours, 0.5 M sulfuric acid (5 mL, 2.5 mmol) was added to the reaction mixture, followed by a few drops of concentrated sulfuric acid, until pH 1.3 was reached. Then, sodium periodate (516 mg, 2.41 mmol) was added, and the reaction mixture was stirred at room temperature for 2 hours and at 40 °C for 22 hours. Water (100 mL) was added and the mixture was extracted twice with tert-butyl methyl ether (100 mL, then 75 mL). The organic extracts were washed with dilute aqueous sodium chloride (100 mL), combined, dried over Na SO₄, and concentrated to afford crude acetyl cyclosporin A aldehyde (1.9 g, 96%; HPLC: 83.4% area) as a white foam. The crude product was chromatographed over silica gel using 40% acetone/60% hexane as eluent to give the product (1.35 g, 68% based on acetyl cyclosporin A; HPLC: 100% area) as a white solid foam.

Example 39 (ISO): Wittig reaction of Aceyl Cyclosporin A aldehyde with 3- Dimethylaminopropyltriphenylphosphorylidene

A stereoselective synthesis of 1,3-dienes has been described by EJ. Corey and M.C.

Desai in Tetrahedron Letters, Vol. 26, No. 47, pp. 5747-8, (1985). This reference discloses that the ylide obtained by treating 3-(dimethylamino)propyltriphenylphosphorane with potassium hexamethyldisilazide can undergo a Wittig reaction with an aldehyde to form selectively a Z-alkenyldimethylamine. Oxidation of the amine with m-chloroperbenzoic acid gives the corresponding N-oxide which can then be heated in what is known as a Cope elimination to form the desired 1,3-diene in which the configuration of the olefin formed during the Wittig step is exclusively Z, or cis. Analogously, the Z-isomer of ISAχχ247 may be prepared by reacting acetyl cyclosporin A aldehyde with ylide obtained by treating 3-(dimethylamino)- propyltriphenylphosphonium bromide with potassium hexamethyldisilazide. The resulting intermediate then undergoes oxidation, followed by Cope elimination to give acetyl-(Z)- ISAχχ247. Deprotection using a base results in (Z)-ISA_Tχ247. The oxidizing reagent may be metachlorperbenzoic acid.

To a stined suspension of 3-dimethylaminopropyltriphosphonium bromide (2.5 g, 5.83 mmol) in anhydrous toluene (20 mL) was added potassium hexamethyldisilazide (11.6 mL, 5.8 mmol, 0.5M solution in toluene) through a syringe. After stirring for 1 h at room temperature, the red-colored solution was centrifuged and the supernatant transfened to a reaction flask through a cannula. To the solid was added anhydrous toluene (10 mL), stirred and centrifuged. The supernatant was transfened to the reaction flask and to the combined red-colored ylide was added OAc-CsA-CHO (1.44 g, 1.17 mmol). Stining was continued for a further period of 2 h at room temperature when the color turned light-yellow. The reaction mixture was diluted with EtOAc (50 mL) and washed subsequently with saturated NaHCO₃ solution (50 mL) and brine (50 mL). Drying and solvent removal furnished a pale-yellow solid. Chromatography over a silica gel column and elution with acetone-hexanes mixture (gradient: 10 to 75% acetone and 90 to 25% hexanes) removed all phosphorous-related impurities. Further elution with acetone furnished desired product as a colorless solid (1.28 g, 84% yield). 1H NMR (300 MHz, CDC1₃): 2.23 (s, 6H), 2.03 (s, 3H). ¹³C NMR (300 MHz, CDC1₃): 129.33, 126.95; MS m/z: 1301 (M⁺), 1324 (M+Na⁺).

Conversion to N-Oxide

To a stirred and cooled (0°C) solution of the dimethylamino compound obtained in the Wittig reaction (0.44 g, 0.34 mmol) in CHC1₃ (3 mL) was added a solution of m-CPB A (0.07 g, 0.405 mmol) in CHC1₃ (2 mL). After stirring for 30 min, dimethyl sulfide (0.5 mL) was added followed by CH₂C1₂ (50 mL). Work-up by washing with NaHCO₃ solution (25 mL) and water (25 mL), drying and solvent removal furnished a solid (0.43 g). 1H NMR (300 MHz, CDC1₃): 3.19 (s, 3H), 3.18 (s, 3H), 2.03 (s, 3H). ¹³C NMR (300 MHz, CDC1₃): 131.89, 124.13; MS m/z: 1340 (M+Na⁺). Cope Elimination of N-Oxide. Preparation of (Z)-Isomer of Acetyl ISA y 247

The N-oxide (350 mg) was stined neat and heated at 100 °C in vacuo for 2 h. This was then passed through a column of silica gel. Elution with acetone-hexanes mixture (gradient, 5 to 25% acetone and 95 to 75% hexanes) furnished a colorless solid (314 mg). ^!H NMR (500 MHz, CDC1₃): 6.49 (dt, 7=16.99, 10.5 Hz, 1H); ¹³C NMR (400 MHz, CDC1₃): 132.20, 131.09, 129.70, 116.85; MS m/z 1279 (M+Na⁺).

(Z)-Isomer o ISAχχ 247

To a solution of (Z)-acetyl ISAχχ 247 (50 mg) in MeOH (4 mL) was added water (1.5 mL) and K₂C0₃ (60 mg) and stined for 48 h at room temperature. The reaction mixture was stripped off solvents and extracted with EtOAc (20 mL). The organic layer was washed with water (10 mL) and brine (10 mL). Drying and solvent removal furnished a colorless solid. ^lH NMR (500 MHz, CDC1₃): 6.58 (dt, 7=16.99, 10.5 Hz, 1H); MS m/z 1236.8 (M+Na⁺). The resulting compound was Z-isomer of ISAχχ247. No measurable E-isomer was observed by NMR.

Although only prefened embodiments of the invention are specifically disclosed and described above, it will be appreciated that many modifications and variations of the present invention are possible in light of the above teachings and within the purview of the appended claims without departing from the spirit and intended scope of the invention.

Claims

WHAT IS CLAIMED IS:

1. A method of preparing an isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the synthetic pathway comprises the steps of: a) heating an acetyl-η-halocyclosporin A with a first compound selected from the group consisting of triaryl phosphine, trialkylphosphine, arylalkylphosphine, and triarylarsine to produce an intermediate; b) preparing a mixture of (E) and (Z)-isomers of acetyl- 1,3-diene by st ring the intermediate with a second compound selected from the group consisting of acetaldehyde, formaldehyde, deuterated formaldehyde, 2-chlorobenzaldehyde, and benzaldehyde; and c) preparing a mixture of (E) and (Z)-isomers of ISAχχ247 by treating the mixture of (E) and (Z)-isomers of acetyl-l,3~diene with a base.

2. The method of claim 1, wherein the acetyl-η-halocyclosporin A is acetyl-η- bromocyclosporin A.

3. The method of claim 1, further including the step of halogenating the η-carbon of the side chain of the 1-amino acid residue of cyclosporin A using a bromination reaction carried out by refluxing acetyl cyclosporin A with N-bromosuccinimide and azo-bis-isobutyronitrile.

4. The method of claim 1, wherein the first compound is triphenylphosphme and the intermediate is triphenylphosphonium halide of acetyl cyclosporin A.

5. The method of claim 1 or 4, wherein the second compound is formaldehyde.

6. A method of preparing an isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the synthetic pathway comprises the steps of: a) converting an acetyl cyclosporin A aldehyde to a mixture of (E) and (Z)-isomers of acetyl- 1,3-diene by reacting the acetyl cyclosporin A aldehyde with a phosphorus ylide via a Wittig reaction, optionally in the presence of a lithium halide; and b) preparing a mixture of (E) and (Z)-isomers of ISAχχ247 by treating the mixture of (E) and (Z)-isomers of acetyl- 1,3-diene with a base.

7. The method of claim 6, in which the phosphorus ylide used in the Wittig reaction is selected from the group consisting of triphenylphosphme, triarylphosphine, trialkylphosphine, and arylalkylphosphine.

8. A method of preparing an isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the synthetic pathway comprises the steps of: a) protecting the β-alcohol of cyclosporin A by forming a first intermediate acetyl cyclosporin A; b) oxidizing the acetyl cyclosporin A to produce a second intermediate acetyl cyclosporin A aldehyde; c) converting an intermediate acetyl cyclosporin A aldehyde to a mixture of (E) and (Z)-isomers of acetyl-l,3-diene by reacting the intermediate with a phosphorus ylide via a Wittig reaction, optionally in the presence of a lithium halide; and d) preparing a mixture of (E) and (Z)-isomers of ISAχχ247 by treating the mixture of (E) and (Z)-isomers of acetyl- 1,3-diene with a base.

9. The method of claim 8, wherein the oxidizing step is carried out with an oxidizing agent selected from the group consisting of ozone, potassium permanganate, ruthenium tetroxide, osmium tetroxide, polymer-supported osmium tetroxide, and ruthenium chloride.

10. The method of claim 9, wherein the ruthenium tetroxide and ruthenium chloride oxidizing agents are used with a co-oxidant selected from the group consisting of periodate and hypochlorite.

11. The method of claim 9, wherein the ruthenium tetroxide and ruthenium chloride oxidizing agents are used with acetonitrile.

12. A method of producing an E-isomer enriched mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the stereoselective synthesis of the E-isomer enriched material comprises the steps of: a) reacting an acetyl cyclosporin A aldehyde with a reagent selected from the group consisting of γ-(trialkylsilylallyl) boronate esters and E-γ-(trialkylsilylallyl) dialkylboranes to form a β-trialkylsilyl alcohol; b) treating the β-trialkylsilyl alcohol with acid to form acetyl-(E)- 1,3-diene; and c) treating the acetyl-(E)-l,3-diene with base to form the (E)-isomer of ISAχχ247.

13. The method of claim 12, wherein the acid that is used to treat the β-trialkylsilyl alcohol is selected from the group consisting of acetic acid, sulfuric acid, and a Lewis acid.

14. A method of producing a Z-isomer enriched mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the stereoselective synthesis of the Z-isomer enriched material comprises the steps of: a) reacting an acetyl cyclosporin A aldehyde with a reagent selected from the group consisting of γ-(trialkylsilylallyl) boronate esters and E-γ-(trialkylsilylallyl) dialkylboranes to form a β-trialkylsilyl alcohol; b) treating the β-trialkylsilyl alcohol with base to form acetyl-(Z)- 1,3-diene; and c) treating the ace tyl-(Z)- 1,3-diene with base to form the (Z)-isomer of ISAχχ247.

15. The method of claim 14, wherein the base that is used to treat the β-trialkylsilyl alcohol is selected from the group consisting of sodium hydride and potassium hydride.

16. The method of claim 12 or 14, wherein the γ-(trialkylsilylallyl) boronate ester is a trimethylsilylallyl boronate ester.

17. The method of claim 12 or 14, wherein the E-γ-(trialkylsilylallyl) dialkylborane is E-γ-(trimethylsilylallyl)-9-BBN.

18. The method of claim 12 or 14, wherein the reagent is E-γ-(trimethylsilylallyl) diethylborane.

19. The method of claim 12, wherein the step of treating the β-trialkylsilyl alcohol with an acid comprises a Peterson olefination.

20. The method of claim 14, wherein the step of treating the β-trialkylsilyl alcohol with a base comprises a Peterson olefination.

21. A method of producing an E-isomer enriched mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the stereoselective synthesis of the E-isomer enriched material comprises the steps of: a) reacting an acetyl cyclosporin A aldehyde with a lithiated allyldiphenylphosphine oxide to form acetyl-(E)-l,3-diene; and b) treating the acetyl-(E)- 1,3-diene with base to form the (E)-isomer of ISAχχ247.

22. A method of producing a Z-isomer enriched mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the stereoselective synthesis of the Z-isomer enriched material comprises the steps of: a) reacting an acetyl cyclosporin A aldehyde with [3-(diphenylphosphino)allyl] titanium to form a titanium-containing intermediate; b) allowing the titanium-containing intermediate to proceed to an erythro-α-adduct; c) converting the erythro-α-adduct to a β-oxidophosphonium salt by treatment of iodomethane; d) converting the β-oxidophosphonium salt to an acetyl-(Z)-l,3-diene; and e) treating the acetyl-(Z)-l,3-diene with base to form the (Z)-isomer of ISA_TX247.

23. A mixture of (E) and (Z)-isomers prepared by a process comprising the steps of: a) protecting the β-alcohol of cyclosporin A to form acetyl cyclosporin A; b) brominating the η-carbon of the side chain of the 1-amino acid residue of acetyl cyclosproin A to produce a first intermediate acetyl-η-bromocyclosporin A; c) heating the first intermediate acetyl-η-bromocyclosporin A with a reagent selected from the group consisting of triphenyl phosphine and trialkyl phosphine to produce an intermediate selected from the group consisting of triphenyl- and trialkyl phosphonium bromides of acetyl cyclosporin A; d) preparing a mixture of (E) and (Z)-isomers of acetyl-l,3-diene by stirring the ylide generated from the triphenyl- or trialkyl salt (second intermediate triphenylphosphonium bromide) of acetyl cyclosporin A with formaldehyde; and e) preparing the mixture of (E) and (Z)-isomers of ISAχχ247 by treating the mixture of (E) and (Z)-isomers of acetyl- 1,3-diene with a base.

24. The method according to any of claims 1, 6, 8, 12, 14, 21, 22 and 23, wherein the base that is used to treat the acetyl- 1,3-diene is selected from the group consisting of sodium hydroxide, sodium carbonate, potassium carbonate, sodium alkoxide, and potassium alkoxide.

25. A composition comprising a triphenylphosphonium salt of acetyl-η-halocyclosporin A.

26. The composition of claim 25, wherein the halide is selected from the group consisting of bromide, chloride, and iodide.

27. The composition of claim 25, wherein the composition is triphenylphosphonium bromide of acetyl cyclosporin A.

28. A composition comprising a β-trimethylsilyl alcohol derivative of cyclosporin A.

29. The method of claim 1, wherein the intermediate is triphenyl- or trialkyl phosphonium bromide of acetyl cyclosporin A, and wherein the step that stirs the intermediate with formaldehyde is done in the presence of a lithium halide.

30. A method for the preparation of cyclosporin A aldehyde comprising the steps of: a) protecting the β-alcohol of cyclosporin A by forming acetyl cyclosporin A; and b) oxidizing the acetyl cyclosporin A with ozone as the oxidizing agent followed by work-up with a reducing agent.

31. A method for the preparation of cyclosporin A aldehyde comprising the steps of: a) protecting the β-alcohol of cyclosporin A by forming trimethylsilyl (TMS) cyclosporin A; and b) oxidizing the TMS cyclosporin A with ozone as the oxidizing agent followed by work-up with a reducing agent.

32. The method of claim 30 or 31, wherein the ozonolysis step is done at a temperature ranging from about -80°C to 0°C.

33. The method of claim 30 or 31, wherein the reducing agent is selected from the group consisting of trialkyl phosphines, triaryl phosphines and trialkylamines.

34. The method of claim 30 or 31, wherein the reducing agent is selected from the group consisting of alkylaryl sulfides, thiosulfates, and dialkyl sulfides.

35. The method of claim 34, wherein the reducing agent is dimethyl sulfide.

36. The method of claim 33, wherein the reducing agent is tributyl phosphine.

37. The method of claim 33, wherein the reducing agent is trialkylamine.

38. The method of claim 37, wherein the reducing agent is triethylamine.

39. The method of any of claims 30 to 38, wherein the solvent used for the ozonolysis of acetyl cyclosporin A is a lower alcohol.

40. The method of claim 39, wherein the alcohol is methanol.

41. The method of claim 31 , wherein the solvent used for the ozonolysis is selected from the group consisting of dichloromethane and a mixture of dichloromethethane and a lower alcohol.

42. The method of claim 41, wherein the lower alcohol is methanol.

43. A method of preparing an isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the synthetic pathway comprises the steps of: a) converting an intermediate acetyl cyclosporin A aldehyde to a mixture of (E) and (Z)-isomers of acetyl-l,3-diene by reacting the intermediate with a phosphorus ylide prepared from a tributylallylphosphonium halide or triphenylphosphonium halide via a Wittig reaction, optionally in the presence of a lithium halide; and b) preparing a mixture of (E) and (Z)-isomers of ISAχχ247 by treating the mixture of (E) and (Z)-isomers of acetyl- 1,3-diene with a base.

44. The method of claim 43, wherein the phosphonium halide is a phosphonium bromide.

45. The method of claim 44, wherein the Wittig reaction is canied out in a solvent selected from the group consisting of tetrahydrofuran and toluene, and wherein the solvent is used in the presence of a compound selected from the group comprised of butyllithium, sodium lower alkoxide, potassium lower alkoxide, and carbonate at a temperature between about -80°C and 110°C.

46. The method of claim 45, wherein the potassium lower alkoxide is potassium-tert- butoxide.

47. The method of claim 46, wherein the solvent is tetrahydrofuran used in the presence of potassium-tert-butoxide at a temperature between about -70°C and -100°C.

48. A method for the stereoselective synthesis of the E-isomer of ISAχχ247 comprising the steps of: a) reacting a trimethylsilyl (TMS) cyclosporin A aldehyde with E-γ-(trialkylsilylaΙlyl) borane to form a β-trialkylsilyl alcohol; and b) treating the β-trialkylsilyl alcohol with acid to form the E-isomer of ISAχχ247.

49. The method of claim 48, wherein the acid that is used is selected from the group consisting of acetic acid, sulfuric acid, or a Lewis acid.

50. The method of claim 48, wherein the acid is BF₃.

51. A method for the stereoselective synthesis of the Z-isomer of ISAχχ247 comprising the steps of: a) reacting a trimethylsilyl (TMS) cyclosporin A aldehyde with E-γ-(trialkylsilylallyl) borane to form a β-trialkylsilyl alcohol; b) treating the β-trialkylsilyl alcohol with base to form TMS-(Z)- 1,3-diene; and c) deprotecting the TMS-(Z)-l,3-diene to form the Z-isomer of ISAχχ247.

52. The method of claim 48 or 51, wherein the E-γ-(trialkylsilylallyl) borane is prepared by the steps of: a) deprotonating an allyltrialkylsilane with a base; and b) reacting the deprotonated allyltrialkylsilane with a dialkylalkoxyborane and a Lewis acid.

53. The method of claim 52, wherein the dialkylalkoxyborane is diethylmethoxyborane and the Lewis acid is BF₃.

54. The method of claim 52, wherein the allyltrialkylsilane is allyltrimethylsilane.

55. The method of claim 52, wherein the base used to deprotonate the allyltrialkylsilane is butyllithium.

56. The method of claim 51 , wherein the base that is used to treat the β-trialkylsilyl alcohol is selected from the group consisting of sodium hydroxide, potassium hydroxide, and alkali lower alkoxides.

57. The method of claim 56, wherein the base is potassium tert-butoxide.

58. The method of claim 51, wherein deprotection is accomplished using an acid selected from the group consisting of hydrochloric acid, acetic acid, citric acid, a Lewis acid, and HF- based reagents.

59. The method of claim 58, wherein the HF-based reagent is selected from the group consisting of tributyl ammonium fluoride and potassium fluoride.

60. A method of preparing an isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, the method comprising a synthetic pathway that prepares an (E)-isomer and a (Z)-isomer of ISA_Tχ247 such that the (E)-isomer and the (Z)-isomer are present in the mixture in a predetermined ratio, wherein the synthetic pathway comprises the steps of: a) protecting the β alcohol of the 1 amino acid of cyclosporin A; b) oxidizing the protected cyclosporin A to produce a protected cyclosporin A aldehyde; c) converting the protected cyclosporin A aldehyde to a mixture of E- and Z- isomers of protected 1,3 diene by reacting the protected cyclosporin A aldehyde with a phosporus ylide via a Wittig reaction, optionally in the presence of a lithium halide; and d) preparing a mixture of E- and Z- isomers by deprotecting the protected 1,3 diene.

61. The method of claim 60, wherein the β alcohol of the 1 amino acid of cyclosporin A is protected by reacting cyclosporin A with a reagent to give a a protected cyclosporin A selected from the group consisting of acetate esters, benzoate esters, substituted benzoate esters, ethers, and silyl ethers.

62. A method of preparing an isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, the method comprising a synthetic pathway that prepares an (E)-isomer and a (Z)-isomer of ISAχχ247 such that the (E)-isomer and the (Z)-isomer are present in the mixture in a predetermined ratio, wherein the ratio of isomers in the mixture ranges from about 45 to 55 percent by weight of the (E)-isomer to about 55 to 45 percent by weight of the (Z)-isomer, based on the total weight of the mixture.

63. A method of preparing a predetermined isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, the method comprising: a) preparing a first material enriched in an (E)-isomer of ISAχχ247; b) preparing a second material enriched in a (Z)-isomer of ISAχχ247; and c) mixing the first and second materials in a ratio designed to give the desired isomeric composition.

64. A method for the preparation of cyclosporin A aldehyde comprising the steps of: a) protecting the β alcohol of cyclosporin A by forming acetyl cyclosporin A; b) converting the acetyl cyclosporin A to the acetyl cyclosporin A epoxide with a monopersulfate, preferably oxone, in the presence of a ketone, preferably an activated ketone, preferably acetoxyacetone or diacetoxyacetone, at a pH over 7; and c) cleaving the epoxide with periodic acid or perodate salt under acidic conditions.

65. The method of claim 64, wherein steps b and c are combined in a work-up procedure.

66. A method of preparing an isomeric mixture of cyclosporin A analogs modified at the 1-amino acid residue, wherein the synthetic pathway comprises the steps of: a) converting an intermediate TMS cyclosporin A aldehyde to a mixture of (E) and (Z)-isomers of TMS-l,3-diene by reacting the intermediate with a phosphorus ylide prepared from a tributylallylphosphonium halide or triphenylphosphonium halide via a Wittig reaction, optionally in the presence of a lithium halide; and b) preparing a mixture of (E) and (Z)-isomers of ISATX247 by deprotecting the mixture of (E) and (Z)-isomers of TMS-l,3-diene with an acid.

67. The method of claim 66, wherein the phosphonium halide is a phosphonium bromide.

68. The method of claim 66, wherein step a) is carried out in a solvent which comprises tetrahydrofuran and/or toluene used in the presence of a sodium or potassium lower alkoxide, or a carbonate, at a temperature between about -80°C and 110°C.

69. The method of claim 68, wherein the sodium or potassium lower alkoxide is potassium-tert-butoxide.

70. The method of claim 66, wherein the acid is selected from the group consisting of hydrochloric acid, acetic acid, citric acid, a Lewis acid, and HF-based reagents.

71. A method for the stereoselective synthesis of the E-isomer of ISAχχ247 comprising the steps of: a) reacting an acetyl cyclosporin A aldehyde with E-γ-(trialkylsilylallyl) borane to form a β-trialkylsilyl alcohol; b) treating the β-trialkylsilyl alcohol with acid to form acetyl-(E)- 1,3-diene; and c) treating the acetyl-(E)-l,3-diene with a base to form the E-isomer of ISAτχ247.

72. The method of claim 48, 51, or 71 wherein the step treating the β-trialkylsilyl alcohol further comprises a Peterson olefination.

73. The method of claim 71 , wherein the borane reagent is E-γ-(trimethylsilylallyl) diethyl borane.

74. The method of claim 71 , wherein the acid that is used is selected from the group consisting of acetic acid, sulfuric acid, or a Lewis acid.

75. The method of claim 74, wherein the acid is sulfuric acid.

76. The method of claim 71, wherein the base that is used to treat the 1,3-diene is selected from the group consisting of sodium hydroxide, sodium carbonate, potassium carbonate, sodium alkoxide, potassium alkoxide, and amine bases selected from the group consisting of NH₃, hydroxylamine, hydrazine, and lower dialkylamines.

77. The method of claim 76, wherein the base is selected from the group consisting of NH₃ and dimethylamine.

78. A method for the conversion of acetyl cyclosporin 1,3-diene to ISAχχ247 wherein the acetyl cyclosporin 1,3-diene is treated with a base selected from the group consisting of sodium hydroxide, sodium carbonate, potassium carbonate, sodium alkoxide, potassium alkoxide, and amine bases selected from the group consisting of NH₃, hydroxylamine, hydrazine, and lower dialkylamines.

79. The method of claim 78, wherein the base is dimethylamine.

80. A method for the stereoselective synthesis of the Z-isomer of ISAχχ247 comprising the steps of: a) treating an acetyl cyclosporine A aldehyde with a 3-(dimethylamino)propyltriphenylphosphonium halide in the presence of a first base to form an acetyl-(Z)-octenyldimethylamine; b) treating the acetyl-(Z)-octenyldimethylamine with an oxidizing reagent to form an acetyl-(Z)-octenyldimethylamine oxide; c) heating the acetyl-(Z)-octenyldimethylamine oxide in a Cope elimination to form an acetyl-(Z)- 1,3-diene; and d) treating the acetyl-(Z)-l,3-diene with a second base to form the (Z)-isomer of ISAτχ247.

81. The method of claim 80, wherein the first base is potassium hexamethyldisilazide.

82. The method of claim 80, wherein the oxidizing reagent is metachlorperbenzoic acid.

83. The method of claim 80, wherein the second base is selected from the group consisting of sodium hydroxide, sodium carbonate, potassium carbonate, sodium alkoxide, potassium alkoxide, and amine bases selected from the group consisting of NH₃, hydroxylamine, hydrazine, and lower dialkylamines.