WO2004059288A2 - Isolated communication sample processing system and methods of biological slide processing - Google Patents
Isolated communication sample processing system and methods of biological slide processing Download PDFInfo
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- WO2004059288A2 WO2004059288A2 PCT/US2003/041022 US0341022W WO2004059288A2 WO 2004059288 A2 WO2004059288 A2 WO 2004059288A2 US 0341022 W US0341022 W US 0341022W WO 2004059288 A2 WO2004059288 A2 WO 2004059288A2
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- sample processing
- processing system
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- automated sample
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Definitions
- Previous efforts to automate sample processing may be deficient in several aspects that prevent more robust automated sample processing, such as: the lack of sufficient computer control and monitoring of sample processing; the lack of information sharing for processing protocol and processing status, especially for individual samples; the lack of practical information input and process definition entry capabilities; the lack of diagnostic capabilities; and the lack of real-time or adaptive capabilities for multiple sample batch processing.
- the techniques and systems of sample processing are addressed in a fashion that may provide the processing of one or more samples or of a plurality of groups of one or more samples in sequential or non-sequential fashion. Processing of samples may be determined by the protocol to be followed for each sample or a protocol for multiple samples. Aspects of the present invention may be especially applicable to sample processing having one or a plurality of processing steps to be performed on one, a portion, or an entirety of samples, such protocols identified in some instances by individual carriers presenting the samples or by the individual samples themselves.
- the present invention may be especially applicable to immunohistochemistry (IHC) techniques, as well as in-situ hybridization (ISH) and fluorescent in-situ hybridization (FISH), special staining of samples, and microarrays; especially techniques incorporating target retrieval, deparaffmization, pretreatment, or the staining of samples.
- embodiments may be directed to processing sequences addressing issues of processing control.
- the invention may comprise an automated sample processing system comprising a plurality of drawers, a plurality of sample carrier elements that may even be each removably configured with one of the drawers, and an adaptive or other sample processing control system.
- the sample carriers may be both movable and removable.
- the sample processing control system may automate the sample processing system and may provide for a variety of communication transfers to/from/and within an overall system so that one or more samples may be processed according to one or more protocols, potentially indicated by information on slides or otherwise input to the system.
- This sample processing may comprise one or more sampling protocols and steps, such as deparaffmization, target retrieval, and staining.
- Another embodiment of the present invention may achieve the foregoing and other objects of invention may comprise a method of sample processing, comprising the steps of: accessing at least one of a plurality of samples or sample drawers, providing at least one sample carrier or perhaps a sample carrier retainment assembly configured with at least one sample, configuring at least one of the drawers with the at least one sample carrier, and adaptively processing the sample.
- the step of processing or perhaps even adaptive processing may be applied to automate the processing of samples and may allow for either or both continuous or batch processing of samples or slides. It may also afford multiple independent sample or slide processing and in some embodiments slide processing to process each slide independently.
- Figure 1 is a depiction of an embodiment of an overall system incorporating some of the features of the invention.
- slides configured with a slide retainment assembly may be provided with informational indicia, such as a code, that may indicate information about the sample presented on the slide or the processing protocol to be performed.
- the sensor element may read the code of the slide to determine the protocol to be performed for the particular slide and sample.
- the system may generate data that may include or permit analysis or use of a variety of aspects, including but not limited to: number of occurrence data, part operation data, amount of usage data, and amount of material used data, statistical data or the like. Such data may, of course, have a like element, perhaps a subroutine, to do or generate the various function or data involved.
- reagents prepared from two or more separate reagents which may be somewhat incompatible e.g. unmixable, such as a water based and an oil based reagent, or insoluble, and therefore requires that the two or more reagents are manually prepared and introduced into a reagent vial shortly before starting the staining process in order to obtain the best possible staining result for the selected examination purposes.
- different staining process steps require a mixture of the same two reagents but in different dissolved ratios.
- Some process steps require mixtures of two or more reagents that, when mixed, have a limited time window of usability because internal chemical processes deteriorate the mixture.
- the probe 210 may be moved by the robot arm towards the slide retainment assembly 205 in which the slides 207 are mounted.
- the slides 207 may be situated with the surface horizontally oriented and the probe 124 may dispense the required amount of reagent on the appropriate slides in accordance with the input data.
- the probe 124 may be moved by the robot arm towards the reagent mixer 209 where it may release reagent into the cup of the reagent mixer 209, and may be subsequently moved to the probe washing station 208.
- the basic concepts of the present invention may be embodied in a variety of ways. It involves both sample processing techniques as well as various systems, assemblies, and devices to accomplish sample processing, input, and other functions.
- the sample processing techniques are also disclosed as part of the results shown to be achieved by the various systems, assemblies, and devices described and as steps which are inherent to utilization. They should be understood to be the natural result of utilizing the devices as intended and described.
- some devices are disclosed, it should be understood that these not only accomplish certain methods but also can be varied in a number of ways. Importantly, as to all of the foregoing, all of these facets should be understood to be encompassed by this disclosure.
Abstract
Description
Claims
Priority Applications (9)
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US10/539,192 US9778273B2 (en) | 2002-12-20 | 2003-12-22 | Isolated communication sample processing system and methods of biological slide processing |
US11/229,098 US7584019B2 (en) | 2003-12-15 | 2005-09-16 | Systems and methods for the automated pre-treatment and processing of biological samples |
US11/227,270 US7850912B2 (en) | 2003-05-14 | 2005-09-16 | Method and apparatus for automated pre-treatment and processing of biological samples |
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US13/345,605 US9182324B2 (en) | 2002-12-20 | 2012-01-06 | Systems and methods for the automated pre-treatment and processing of biological samples |
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PCT/US2005/006383 Continuation-In-Part WO2005084263A2 (en) | 2002-12-20 | 2005-02-28 | Reagent delivery system, dispensing device and container for a biological staining apparatus |
US11/227,270 Continuation US7850912B2 (en) | 2002-12-20 | 2005-09-16 | Method and apparatus for automated pre-treatment and processing of biological samples |
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US11/227,270 Continuation-In-Part US7850912B2 (en) | 2002-12-20 | 2005-09-16 | Method and apparatus for automated pre-treatment and processing of biological samples |
US11/338,522 Continuation-In-Part US7593787B2 (en) | 2002-12-20 | 2006-01-23 | Systems and methods for the automated pre-treatment and processing of biological samples |
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PCT/US2003/040974 WO2004059441A2 (en) | 2002-12-20 | 2003-12-19 | Information notification sample processing system and methods of biological slide processing |
PCT/US2003/040520 WO2004059284A2 (en) | 2002-12-20 | 2003-12-19 | Apparatus for automated processing biological samples |
PCT/US2003/040518 WO2004058950A1 (en) | 2002-12-20 | 2003-12-19 | A method and apparatus for automatic staining of tissue samples |
PCT/US2003/040591 WO2004058404A2 (en) | 2002-12-20 | 2003-12-19 | Enhanced scheduling sample processing system and methods of biological slide processing |
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PCT/US2003/041022 WO2004059288A2 (en) | 2002-12-20 | 2003-12-22 | Isolated communication sample processing system and methods of biological slide processing |
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PCT/US2003/040519 WO2004059297A1 (en) | 2002-12-20 | 2003-12-19 | Advanced programmed sample processing system and methods of biological slide processing |
PCT/US2003/040974 WO2004059441A2 (en) | 2002-12-20 | 2003-12-19 | Information notification sample processing system and methods of biological slide processing |
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PCT/US2003/040518 WO2004058950A1 (en) | 2002-12-20 | 2003-12-19 | A method and apparatus for automatic staining of tissue samples |
PCT/US2003/040591 WO2004058404A2 (en) | 2002-12-20 | 2003-12-19 | Enhanced scheduling sample processing system and methods of biological slide processing |
PCT/US2003/040880 WO2004059287A2 (en) | 2002-12-20 | 2003-12-22 | Systems and methods of sample processing and temperature control |
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