WO2007014257A3 - Multicellular metabolic models and methods - Google Patents
Multicellular metabolic models and methods Download PDFInfo
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- WO2007014257A3 WO2007014257A3 PCT/US2006/029001 US2006029001W WO2007014257A3 WO 2007014257 A3 WO2007014257 A3 WO 2007014257A3 US 2006029001 W US2006029001 W US 2006029001W WO 2007014257 A3 WO2007014257 A3 WO 2007014257A3
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/5005—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells
- G01N33/5008—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells for testing or evaluating the effect of chemical or biological compounds, e.g. drugs, cosmetics
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/10—Ontologies; Annotations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16C—COMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
- G16C20/00—Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
- G16C20/30—Prediction of properties of chemical compounds, compositions or mixtures
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2500/00—Screening for compounds of potential therapeutic value
- G01N2500/10—Screening for compounds of potential therapeutic value involving cells
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
Abstract
Priority Applications (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
EP06800352A EP1910553A4 (en) | 2005-07-21 | 2006-07-21 | Multicellular metabolic models and methods |
AU2006272616A AU2006272616A1 (en) | 2005-07-21 | 2006-07-21 | Multicellular metabolic models and methods |
JP2008523048A JP5346581B2 (en) | 2005-07-21 | 2006-07-21 | Multicellular metabolic model and method |
CA002615504A CA2615504A1 (en) | 2005-07-21 | 2006-07-21 | Multicellular metabolic models and methods |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US11/188,136 | 2005-07-21 | ||
US11/188,136 US8949032B2 (en) | 2002-03-29 | 2005-07-21 | Multicellular metabolic models and methods |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2007014257A2 WO2007014257A2 (en) | 2007-02-01 |
WO2007014257A3 true WO2007014257A3 (en) | 2009-06-18 |
Family
ID=37683940
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2006/029001 WO2007014257A2 (en) | 2005-07-21 | 2006-07-21 | Multicellular metabolic models and methods |
Country Status (6)
Country | Link |
---|---|
US (3) | US8949032B2 (en) |
EP (1) | EP1910553A4 (en) |
JP (2) | JP5346581B2 (en) |
AU (2) | AU2006272616A1 (en) |
CA (1) | CA2615504A1 (en) |
WO (1) | WO2007014257A2 (en) |
Families Citing this family (25)
Publication number | Priority date | Publication date | Assignee | Title |
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WO2000046405A2 (en) * | 1999-02-02 | 2000-08-10 | Bernhard Palsson | Methods for identifying drug targets based on genomic sequence data |
US7127379B2 (en) * | 2001-01-31 | 2006-10-24 | The Regents Of The University Of California | Method for the evolutionary design of biochemical reaction networks |
CA2439260C (en) * | 2001-03-01 | 2012-10-23 | The Regents Of The University Of California | Models and methods for determining systemic properties of regulated reaction networks |
US7751981B2 (en) * | 2001-10-26 | 2010-07-06 | The Regents Of The University Of California | Articles of manufacture and methods for modeling Saccharomyces cerevisiae metabolism |
US20030224363A1 (en) * | 2002-03-19 | 2003-12-04 | Park Sung M. | Compositions and methods for modeling bacillus subtilis metabolism |
US8949032B2 (en) | 2002-03-29 | 2015-02-03 | Genomatica, Inc. | Multicellular metabolic models and methods |
AU2003222214B2 (en) * | 2002-10-15 | 2010-08-12 | The Regents Of The University Of California | Methods and systems to identify operational reaction pathways |
US7869957B2 (en) * | 2002-10-15 | 2011-01-11 | The Regents Of The University Of California | Methods and systems to identify operational reaction pathways |
JP2006119017A (en) * | 2004-10-22 | 2006-05-11 | Oki Electric Ind Co Ltd | Method for determining type of plant using thermal cracking gas chromatography |
KR100616611B1 (en) * | 2005-03-31 | 2006-08-25 | 한국과학기술원 | Information system for metabolic flux analysis using extensible markup language and operating method thereof |
US7478352B2 (en) | 2006-06-22 | 2009-01-13 | The Boeing Company | Method for creating box level groupings of components and connections in a dynamic layout system |
WO2008045306A2 (en) * | 2006-10-04 | 2008-04-17 | The Regents Of The University Of California | Compositions and methods for modeling human metabolism |
US20090023182A1 (en) * | 2007-07-18 | 2009-01-22 | Schilling Christophe H | Complementary metabolizing organisms and methods of making same |
JP5283366B2 (en) * | 2007-10-25 | 2013-09-04 | 株式会社日立ソリューションズ | Method for displaying the relationship between biopolymers |
WO2010098865A1 (en) | 2009-02-26 | 2010-09-02 | Gt Life Sciences, Inc. | Mammalian cell line models and related methods |
CA2802878C (en) * | 2010-06-17 | 2018-12-18 | Pauly, Patrice L. | Apparatus, method and computer-readable storage medium for evaluating the global diagnostic of a patient and its associated therapy |
US9234210B2 (en) | 2010-08-25 | 2016-01-12 | Intrexon Ceu, Inc. | Selectable markers and related methods |
WO2014022864A1 (en) * | 2012-08-03 | 2014-02-06 | University Of Virginia Patent Foundation | Computer simulation for testing and monitoring of treatment strategies for stress hyperglycemia |
EP2821790A1 (en) * | 2013-07-04 | 2015-01-07 | Universität Heidelberg | Tumor energy metabolism profiling |
CN105867345B (en) * | 2016-03-24 | 2018-04-27 | 浙江科技学院 | The source of trouble and fault propagation path orientation method of a kind of multivariable chemical process |
WO2018059214A1 (en) * | 2016-09-29 | 2018-04-05 | 广州君赫生物科技有限公司 | Compounds affecting saicar synthesis, and applications |
WO2018192323A1 (en) | 2017-04-20 | 2018-10-25 | 广州君赫生物科技有限公司 | Applications of spermidine and its derivative |
CN111242538B (en) * | 2020-01-07 | 2023-05-23 | 北京唐颐惠康生物医学技术有限公司 | Dynamic whole-flow cell inventory transfer method and system |
WO2023081000A1 (en) * | 2021-11-03 | 2023-05-11 | Simbiosys, Inc. | Metabolic modeling for disease prognosis and treatment |
CN117133377A (en) * | 2023-10-27 | 2023-11-28 | 浙江大学 | Metabonomics-based metabolite combination model data iterative processing method |
Citations (1)
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US6983227B1 (en) * | 1995-01-17 | 2006-01-03 | Intertech Ventures, Ltd. | Virtual models of complex systems |
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US5273038A (en) | 1990-07-09 | 1993-12-28 | Beavin William C | Computer simulation of live organ |
US5639949A (en) | 1990-08-20 | 1997-06-17 | Ciba-Geigy Corporation | Genes for the synthesis of antipathogenic substances |
EP0558671B1 (en) | 1990-11-21 | 1999-01-27 | Iterex Pharmaceuticals Ltd. Partnership | Synthesis of equimolar multiple oligomer mixtures, especially of oligopeptide mixtures |
JPH078289A (en) * | 1993-06-29 | 1995-01-13 | Osaka Gas Co Ltd | Method for synthesizing peptide and protein using ribosome |
US5553234A (en) | 1994-09-23 | 1996-09-03 | International Business Machines Corporation | System and method for including stored procedures, user-defined functions, and trigger processing in an existing unit of work |
US5930154A (en) | 1995-01-17 | 1999-07-27 | Intertech Ventures, Ltd. | Computer-based system and methods for information storage, modeling and simulation of complex systems organized in discrete compartments in time and space |
US5980096A (en) | 1995-01-17 | 1999-11-09 | Intertech Ventures, Ltd. | Computer-based system, methods and graphical interface for information storage, modeling and stimulation of complex systems |
WO1996022575A1 (en) | 1995-01-17 | 1996-07-25 | Intertech Ventures, Ltd. | Control systems based on simulated virtual models |
US5914891A (en) | 1995-01-20 | 1999-06-22 | Board Of Trustees, The Leland Stanford Junior University | System and method for simulating operation of biochemical systems |
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US6326140B1 (en) | 1995-08-09 | 2001-12-04 | Regents Of The University Of California | Systems for generating and analyzing stimulus-response output signal matrices |
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US6165709A (en) | 1997-02-28 | 2000-12-26 | Fred Hutchinson Cancer Research Center | Methods for drug target screening |
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JP2000163398A (en) | 1998-11-26 | 2000-06-16 | Sony Corp | Device and method for processing information and provision medium |
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WO2000046405A2 (en) | 1999-02-02 | 2000-08-10 | Bernhard Palsson | Methods for identifying drug targets based on genomic sequence data |
FR2789981B1 (en) | 1999-02-19 | 2001-05-04 | Oreal | LOCKABLE DISTRIBUTION HEAD AND DISTRIBUTOR THUS EQUIPPED |
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US7127379B2 (en) | 2001-01-31 | 2006-10-24 | The Regents Of The University Of California | Method for the evolutionary design of biochemical reaction networks |
CA2439260C (en) * | 2001-03-01 | 2012-10-23 | The Regents Of The University Of California | Models and methods for determining systemic properties of regulated reaction networks |
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DE02786364T1 (en) * | 2001-10-01 | 2005-01-13 | Diversa Inc., San Diego | CONSTRUCTION OF WHOLE CELLS USING A REAL-TIME ANALYSIS OF THE METABOLIC RIVER |
US20030224363A1 (en) | 2002-03-19 | 2003-12-04 | Park Sung M. | Compositions and methods for modeling bacillus subtilis metabolism |
US8949032B2 (en) | 2002-03-29 | 2015-02-03 | Genomatica, Inc. | Multicellular metabolic models and methods |
US8229673B2 (en) | 2002-03-29 | 2012-07-24 | Genomatica, Inc. | Human metabolic models and methods |
US7856317B2 (en) | 2002-06-14 | 2010-12-21 | Genomatica, Inc. | Systems and methods for constructing genomic-based phenotypic models |
CA2491753A1 (en) | 2002-07-10 | 2004-03-04 | The Penn State Research Foundation | Method for determining gene knockout strategies |
AU2003222214B2 (en) | 2002-10-15 | 2010-08-12 | The Regents Of The University Of California | Methods and systems to identify operational reaction pathways |
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-
2005
- 2005-07-21 US US11/188,136 patent/US8949032B2/en active Active
-
2006
- 2006-07-21 AU AU2006272616A patent/AU2006272616A1/en not_active Abandoned
- 2006-07-21 EP EP06800352A patent/EP1910553A4/en not_active Withdrawn
- 2006-07-21 CA CA002615504A patent/CA2615504A1/en not_active Abandoned
- 2006-07-21 JP JP2008523048A patent/JP5346581B2/en not_active Expired - Fee Related
- 2006-07-21 WO PCT/US2006/029001 patent/WO2007014257A2/en active Application Filing
-
2012
- 2012-06-05 AU AU2012203311A patent/AU2012203311A1/en not_active Abandoned
-
2013
- 2013-02-12 JP JP2013024285A patent/JP2013101691A/en active Pending
-
2014
- 2014-12-16 US US14/572,615 patent/US20150302141A1/en not_active Abandoned
-
2020
- 2020-09-11 US US17/018,629 patent/US20210241846A1/en not_active Abandoned
Patent Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6983227B1 (en) * | 1995-01-17 | 2006-01-03 | Intertech Ventures, Ltd. | Virtual models of complex systems |
Also Published As
Publication number | Publication date |
---|---|
US8949032B2 (en) | 2015-02-03 |
US20060147899A1 (en) | 2006-07-06 |
JP2013101691A (en) | 2013-05-23 |
WO2007014257A2 (en) | 2007-02-01 |
AU2012203311A1 (en) | 2012-06-21 |
AU2006272616A1 (en) | 2007-02-01 |
US20150302141A1 (en) | 2015-10-22 |
CA2615504A1 (en) | 2007-02-01 |
EP1910553A2 (en) | 2008-04-16 |
US20210241846A1 (en) | 2021-08-05 |
JP2009514062A (en) | 2009-04-02 |
EP1910553A4 (en) | 2010-01-06 |
JP5346581B2 (en) | 2013-11-20 |
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