WO2007044727A3 - Pkr activation via hybridization chain reaction - Google Patents

Pkr activation via hybridization chain reaction Download PDF

Info

Publication number
WO2007044727A3
WO2007044727A3 PCT/US2006/039571 US2006039571W WO2007044727A3 WO 2007044727 A3 WO2007044727 A3 WO 2007044727A3 US 2006039571 W US2006039571 W US 2006039571W WO 2007044727 A3 WO2007044727 A3 WO 2007044727A3
Authority
WO
WIPO (PCT)
Prior art keywords
chain reaction
hybridization chain
rna
pkr
activation via
Prior art date
Application number
PCT/US2006/039571
Other languages
French (fr)
Other versions
WO2007044727A2 (en
Inventor
Robert Dirks
Niles A Pierce
Original Assignee
California Inst Of Techn
Robert Dirks
Niles A Pierce
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by California Inst Of Techn, Robert Dirks, Niles A Pierce filed Critical California Inst Of Techn
Priority to AT06836249T priority Critical patent/ATE526975T1/en
Priority to EP06836249A priority patent/EP1931806B1/en
Publication of WO2007044727A2 publication Critical patent/WO2007044727A2/en
Publication of WO2007044727A3 publication Critical patent/WO2007044727A3/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/14Antivirals for RNA viruses
    • A61P31/18Antivirals for RNA viruses for HIV
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents

Abstract

The present application relates to the use of hybridization chain reaction (HCR) to form double stranded RNA polymers in the presence of a target, such as a nucleic acid associated with a disease or disorder. The RNA polymers are preferably able to activate the RNA-dependent kinase PKR. Activation of PKR via RNA-HCR can be used to treat a wide variety of diseases and disorders by specifically targeting diseased cells.
PCT/US2006/039571 2005-10-07 2006-10-06 Pkr activation via hybridization chain reaction WO2007044727A2 (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
AT06836249T ATE526975T1 (en) 2005-10-07 2006-10-06 PKR ACTIVATION USING HYBRIDIZATION CHAIN REACTION
EP06836249A EP1931806B1 (en) 2005-10-07 2006-10-06 Pkr activation via hybridization chain reaction

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US72501105P 2005-10-07 2005-10-07
US60/725,011 2005-10-07

Publications (2)

Publication Number Publication Date
WO2007044727A2 WO2007044727A2 (en) 2007-04-19
WO2007044727A3 true WO2007044727A3 (en) 2009-05-28

Family

ID=37943474

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2006/039571 WO2007044727A2 (en) 2005-10-07 2006-10-06 Pkr activation via hybridization chain reaction

Country Status (4)

Country Link
US (2) US7960357B2 (en)
EP (1) EP1931806B1 (en)
AT (1) ATE526975T1 (en)
WO (1) WO2007044727A2 (en)

Families Citing this family (27)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
ATE480550T1 (en) * 2004-03-25 2010-09-15 California Inst Of Techn HYBRIDIZATION CHAIN REACTION
US7727721B2 (en) 2005-03-08 2010-06-01 California Institute Of Technology Hybridization chain reaction amplification for in situ imaging
ATE526975T1 (en) 2005-10-07 2011-10-15 California Inst Of Techn PKR ACTIVATION USING HYBRIDIZATION CHAIN REACTION
US8778846B2 (en) 2006-12-04 2014-07-15 General Electric Company Composition, device and associated method
WO2008106658A2 (en) 2007-03-01 2008-09-04 California Institute Of Technology TRIGGERED RNAi
WO2008144562A1 (en) 2007-05-16 2008-11-27 California Institute Of Technology A versatile nucleic acid hairpin motif for programming biomolecular self-assembly pathways
US8497364B2 (en) 2008-02-27 2013-07-30 California Institute Of Technology Triggered RNAi
US20100021904A1 (en) * 2008-05-21 2010-01-28 Pierce Niles A Shielded cross-linking probes
US8241854B2 (en) 2008-05-22 2012-08-14 California Institute Of Technology Triggered RNAi
US20100021901A1 (en) * 2008-05-22 2010-01-28 Peng Yin Compositions and methods for detecting analytes
JP5492901B2 (en) * 2008-10-23 2014-05-14 コーニンクレッカ フィリップス エヌ ヴェ Molecular imaging
CN101756151B (en) * 2008-12-24 2012-12-12 安琪酵母股份有限公司 Yeast extract with high glutamic acid content and preparation method thereof
JP2009159990A (en) * 2009-04-21 2009-07-23 Sanei Gen Ffi Inc Highly nutritive food
US8658780B2 (en) * 2010-05-18 2014-02-25 California Institute Of Technology Triggered covalent probes for imaging and silencing genetic expression
US8877438B2 (en) 2010-07-20 2014-11-04 California Institute Of Technology Self-assembled polynucleotide structure
US8962241B2 (en) 2010-07-20 2015-02-24 California Institute Of Technology Triggered molecular geometry based bioimaging probes
US9834439B2 (en) 2010-07-20 2017-12-05 California Institute Of Technology Biomolecular self-assembly
DE102012203964B3 (en) * 2012-03-14 2013-02-28 GNA Biosolultions GmbH Determining concentration of specific nucleic acids in sample, comprises providing first probe comprising first and second oligonucleotides complementary to each other, and contacting first probe and second oligonucleotide with sample
US9856472B2 (en) 2013-07-01 2018-01-02 California Institute Of Technology Small conditional RNAs
GB201401885D0 (en) 2014-02-04 2014-03-19 Olink Ab Proximity assay with detection based on hybridisation chain reaction (HCR)
ES2908919T3 (en) 2016-07-05 2022-05-04 California Inst Of Techn Fractional primer hybridization chain reaction
AU2017321492A1 (en) 2016-08-30 2019-03-14 California Institute Of Technology Immunohistochemistry via hybridization chain reaction
US11459603B2 (en) * 2017-05-23 2022-10-04 Rutgers, The State University Of New Jersey Target mediated in situ signal amplification with dual interacting hairpin probes
CN110286216B (en) * 2019-05-16 2021-10-15 中国科学院武汉物理与数学研究所 A rapidly visualized hemolytic escherichia coli O157: h7 detection method
EP4284925A1 (en) 2021-01-26 2023-12-06 California Institute of Technology Allosteric conditional guide rnas for cell-selective regulation of crispr/cas
CA3228120A1 (en) * 2021-08-04 2023-02-09 The University Of Tokyo Hairpin nucleic acid composition
WO2024005045A1 (en) * 2022-06-28 2024-01-04 国立大学法人東京大学 Hairpin nucleic acid composition

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1994001550A1 (en) * 1992-07-02 1994-01-20 Hybridon, Inc. Self-stabilized oligonucleotides as therapeutic agents
WO1999031276A1 (en) * 1997-12-15 1999-06-24 Nexstar Pharmaceuticals, Inc. Homogeneous detection of a target through nucleic acid ligand-ligand beacon interaction

Family Cites Families (72)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4120706A (en) * 1977-09-16 1978-10-17 Harris Corporation Heteroepitaxial deposition of gap on silicon substrates
US4714680B1 (en) * 1984-02-06 1995-06-27 Univ Johns Hopkins Human stem cells
US4965204A (en) * 1984-02-06 1990-10-23 The Johns Hopkins University Human stem cells and monoclonal antibodies
US4897355A (en) * 1985-01-07 1990-01-30 Syntex (U.S.A.) Inc. N[ω,(ω-1)-dialkyloxy]- and N-[ω,(ω-1)-dialkenyloxy]-alk-1-yl-N,N,N-tetrasubstituted ammonium lipids and uses therefor
EP0273085A1 (en) 1986-12-29 1988-07-06 IntraCel Corporation A method for internalizing nucleic acids into eukaryotic cells
US5057410A (en) * 1988-08-05 1991-10-15 Cetus Corporation Chimeric messenger RNA detection methods
US5118801A (en) 1988-09-30 1992-06-02 The Public Health Research Institute Nucleic acid process containing improved molecular switch
US5061620A (en) * 1990-03-30 1991-10-29 Systemix, Inc. Human hematopoietic stem cell
US5264618A (en) * 1990-04-19 1993-11-23 Vical, Inc. Cationic lipids for intracellular delivery of biologically active molecules
US5270163A (en) 1990-06-11 1993-12-14 University Research Corporation Methods for identifying nucleic acid ligands
JP3256539B2 (en) 1990-08-28 2002-02-12 エポック・ファーマシューティカルズ・インコーポレイテッド Solid support synthesis of 3'-tailed oligonucleotides via linking molecules
US5563256A (en) 1991-05-29 1996-10-08 Merck & Co., Inc. Eimeria tenella 16S rDNA probes
US5424413A (en) 1992-01-22 1995-06-13 Gen-Probe Incorporated Branched nucleic acid probes
US5677136A (en) * 1994-11-14 1997-10-14 Systemix, Inc. Methods of obtaining compositions enriched for hematopoietic stem cells, compositions derived therefrom and methods of use thereof
US5787104A (en) * 1995-01-19 1998-07-28 Matsushita Electric Industrial Co., Ltd. Semiconductor light emitting element and method for fabricating the same
AU711702B2 (en) * 1995-03-23 1999-10-21 Cambridge University Technical Services Limited Vectors for gene delivery
CA2224907A1 (en) * 1995-07-25 1997-02-13 Introgene B.V. Methods and means for targeted gene delivery
US5579793A (en) * 1995-11-15 1996-12-03 Rubbermaid Health Care Products, Inc. Foldable walker
CA2243353C (en) 1996-01-24 2010-03-30 Third Wave Technologies, Inc. Invasive cleavage of nucleic acids
US6361944B1 (en) * 1996-07-29 2002-03-26 Nanosphere, Inc. Nanoparticles having oligonucleotides attached thereto and uses therefor
US5691145A (en) 1996-08-27 1997-11-25 Becton, Dickinson And Company Detection of nucleic acids using G-quartets
CA2268069A1 (en) 1996-10-04 1998-04-09 Chronix Biomedical Diagnostic detection of nucleic acids
CA2273204C (en) 1996-11-29 2008-10-14 Third Wave Technologies, Inc. Fen-1 endonucleases, mixtures and cleavage methods
US6555367B1 (en) * 1997-10-10 2003-04-29 The United States Of America As Represented By The Department Of Health And Human Services Complex of biotinylated viral vector and ligand for targeted gene delivery
GB9721909D0 (en) * 1997-10-17 1997-12-17 Cantab Pharma Res Gene delivery vectors and their uses
US6242246B1 (en) * 1997-12-15 2001-06-05 Somalogic, Inc. Nucleic acid ligand diagnostic Biochip
US5989823A (en) * 1998-09-18 1999-11-23 Nexstar Pharmaceuticals, Inc. Homogeneous detection of a target through nucleic acid ligand-ligand beacon interaction
US6506559B1 (en) * 1997-12-23 2003-01-14 Carnegie Institute Of Washington Genetic inhibition by double-stranded RNA
WO1999047180A1 (en) * 1998-03-20 1999-09-23 Genzyme Corporation Chimeric adenoviral vectors for targeted gene delivery
US6255469B1 (en) 1998-05-06 2001-07-03 New York University Periodic two and three dimensional nucleic acid structures
US6290839B1 (en) 1998-06-23 2001-09-18 Clinical Micro Sensors, Inc. Systems for electrophoretic transport and detection of analytes
US6361945B1 (en) * 1998-07-02 2002-03-26 Gen-Probe Incorporated Molecular torches
US6899871B2 (en) * 1998-10-01 2005-05-31 University Of Southern California Gene delivery system and methods of use
EP1059357A1 (en) * 1999-06-09 2000-12-13 Universite Pierre Et Marie Curie Paris Vi Replicating or semi-replicating retroviral constructs, preparation and uses for gene delivery
US6498023B1 (en) 1999-12-02 2002-12-24 Molecular Staging, Inc. Generation of single-strand circular DNA from linear self-annealing segments
US20050239061A1 (en) 2000-03-01 2005-10-27 Marshall William S Identification and use of effectors and allosteric molecules for the alteration of gene expression
US20040009510A1 (en) 2000-03-06 2004-01-15 Scott Seiwert Allosteric nucleic acid sensor molecules
JP2003535600A (en) * 2000-06-02 2003-12-02 バイエル コーポレイション Sensitive gene detection and localization using in situ branched DNA hybridization
CA2451614C (en) 2001-06-25 2011-01-04 Georgia Tech Research Corporation Dual resonance energy transfer nucleic acid probes
US6814832B2 (en) * 2001-07-24 2004-11-09 Seiko Epson Corporation Method for transferring element, method for producing element, integrated circuit, circuit board, electro-optical device, IC card, and electronic appliance
US20050089864A1 (en) 2002-01-22 2005-04-28 Yingfu Li Signalling aptamer complexes
US20040126773A1 (en) 2002-05-23 2004-07-01 Beske Oren E. Assays with coded sensor particles to sense assay conditions
US20040043386A1 (en) 2002-08-30 2004-03-04 Todd Pray Methods and compositions for functional ubiquitin assays
US20040223953A1 (en) * 2003-03-17 2004-11-11 Hsiang-Fu Kung Combined adeno-associated virus and adenovirus cocktail gene delivery system for high efficiency gene expression without eliciting immune response in immuno-competent subjects
US20050112614A1 (en) 2003-05-15 2005-05-26 California Institute Of Technology Self-assembled circuits and circuit patterns
ATE480550T1 (en) 2004-03-25 2010-09-15 California Inst Of Techn HYBRIDIZATION CHAIN REACTION
US20060035375A1 (en) 2004-08-16 2006-02-16 Head Jonathan F Method for selectively culturing epithelial or carcinoma cells
BRPI0516955A (en) 2004-09-24 2008-09-30 Ingeneus Inc genetic assay
WO2006042112A2 (en) 2004-10-05 2006-04-20 California Institute Of Technology Aptamer regulated nucleic acids and uses thereof
KR101411361B1 (en) 2004-11-08 2014-06-25 비퍼겐 에이피에스 Structural nucleic acid guided chemical synthesis
US7727721B2 (en) 2005-03-08 2010-06-01 California Institute Of Technology Hybridization chain reaction amplification for in situ imaging
US20060234261A1 (en) * 2005-03-08 2006-10-19 Pierce Niles A Colorimetric readout of hybridization chain reaction
JP4986406B2 (en) * 2005-03-31 2012-07-25 住友電工デバイス・イノベーション株式会社 Manufacturing method of semiconductor device
EP1885892A2 (en) 2005-05-03 2008-02-13 Ensemble Discovery Corporation Turnover probes and use thereof for nucleic acid detection
US7842793B2 (en) 2005-06-14 2010-11-30 The California Institute Of Technology Methods of making nucleic acid nanostructures
ATE526975T1 (en) 2005-10-07 2011-10-15 California Inst Of Techn PKR ACTIVATION USING HYBRIDIZATION CHAIN REACTION
GB0607866D0 (en) 2006-04-20 2006-05-31 Isis Innovation Nanostructures
WO2007147159A2 (en) 2006-06-16 2007-12-21 Cornell Research Foundation, Inc. Functional nucleic acid ligands to fluorescent proteins
WO2008106658A2 (en) 2007-03-01 2008-09-04 California Institute Of Technology TRIGGERED RNAi
PT2158213E (en) 2007-05-14 2012-03-27 Univ Mexico Nacional Autonoma Vm23 and vm24, two scorpion peptides that block human t-lymphocyte potassium channels (sub-type kv1.3) with high selectivity
WO2008144562A1 (en) 2007-05-16 2008-11-27 California Institute Of Technology A versatile nucleic acid hairpin motif for programming biomolecular self-assembly pathways
US8497364B2 (en) 2008-02-27 2013-07-30 California Institute Of Technology Triggered RNAi
US20100021904A1 (en) 2008-05-21 2010-01-28 Pierce Niles A Shielded cross-linking probes
US20100021901A1 (en) 2008-05-22 2010-01-28 Peng Yin Compositions and methods for detecting analytes
US8241854B2 (en) 2008-05-22 2012-08-14 California Institute Of Technology Triggered RNAi
WO2009152492A1 (en) 2008-06-13 2009-12-17 University Of Connecticut Nucleic acid materials for nonradiative energy transfer and methods of production and use
WO2010047797A2 (en) 2008-10-21 2010-04-29 Research Foundation Of The City University Of New York Single quantum-dot-based aptameric sensors
WO2011126996A2 (en) 2010-04-05 2011-10-13 California Institute Of Technology System and method for nucleic acid sequence design
US8658780B2 (en) 2010-05-18 2014-02-25 California Institute Of Technology Triggered covalent probes for imaging and silencing genetic expression
US8962241B2 (en) 2010-07-20 2015-02-24 California Institute Of Technology Triggered molecular geometry based bioimaging probes
US8877438B2 (en) 2010-07-20 2014-11-04 California Institute Of Technology Self-assembled polynucleotide structure
US9834439B2 (en) 2010-07-20 2017-12-05 California Institute Of Technology Biomolecular self-assembly

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1994001550A1 (en) * 1992-07-02 1994-01-20 Hybridon, Inc. Self-stabilized oligonucleotides as therapeutic agents
WO1999031276A1 (en) * 1997-12-15 1999-06-24 Nexstar Pharmaceuticals, Inc. Homogeneous detection of a target through nucleic acid ligand-ligand beacon interaction

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
SOKOL ET AL.: "Real time detection of DNA-RNA hybridization in living cells", PROC.NAT. ACAD. SCI., vol. 95, 1998, USA, pages 11538 - 11543, XP002123471 *

Also Published As

Publication number Publication date
US8962582B2 (en) 2015-02-24
US20070087334A1 (en) 2007-04-19
EP1931806A4 (en) 2010-05-26
ATE526975T1 (en) 2011-10-15
WO2007044727A2 (en) 2007-04-19
US7960357B2 (en) 2011-06-14
EP1931806A2 (en) 2008-06-18
EP1931806B1 (en) 2011-10-05
US20110313030A1 (en) 2011-12-22

Similar Documents

Publication Publication Date Title
WO2007044727A3 (en) Pkr activation via hybridization chain reaction
WO2006026485A3 (en) Modulation of hif1-beta expression
WO2005071080A3 (en) Modulation of glucocorticoid receptor expression
WO2010048552A3 (en) Methods of using oligomeric compounds comprising 2'-substituted nucleosides
WO2005005599A3 (en) Modulation of c-reactive protein expression
WO2008028117A3 (en) Glp-2 mimetibodies, polypeptides, compositions, methods and uses
WO2007095316A3 (en) Compositions and methods for oligonucleotide formulations
WO2006018836A3 (en) Nucleic acid constructs and cells, and methods utilizing same for modifying the electrophysiological function of excitable tissues
WO2007065010A3 (en) Anti-angiogenesis compounds
WO2010141511A3 (en) Polynucleotides for multivalent rna interference, compositions and methods of use thereof
WO2006009765A3 (en) Methods for the identification and use of compounds suitable for the treatment of drug resistant cancer cells
WO2005000201A3 (en) Modulation of apolipoprotein (a) expression
WO2006135684A3 (en) Methods and kits for sense rna synthesis
WO2004096016A3 (en) Modulation of glucagon receptor expression
WO2005079532A3 (en) Methods and compositions for enhancing risc activity in vitro and in vivo
WO2004055162A3 (en) Modulation of endothelial lipase expression
WO2004096996A3 (en) Modulation of glucagon receptor expression
WO2005042552A3 (en) Modulation of sglt2 expression
WO2005086804A3 (en) Modulation of ace2 expression
WO2008107471A3 (en) Modified hydroxypolymer conjugates with killing effect on tumor cells
WO2005021727A3 (en) Isoform-specific targeting of splice variants
GB0820397D0 (en) Cells, nucleic acid constructs, cells comprising said constructs and methods utilizing said cells in the treatment of diseases
WO2004047741A3 (en) Modulation of iap-like expression
WO2005006958A3 (en) Modulation of ceacam1 expression
WO2004045527A3 (en) Modulation of nima-related kinase 6 expression

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application
WWE Wipo information: entry into national phase

Ref document number: 2006836249

Country of ref document: EP

NENP Non-entry into the national phase

Ref country code: DE