WO2007136874A3 - Genomic library construction - Google Patents
Genomic library construction Download PDFInfo
- Publication number
- WO2007136874A3 WO2007136874A3 PCT/US2007/012229 US2007012229W WO2007136874A3 WO 2007136874 A3 WO2007136874 A3 WO 2007136874A3 US 2007012229 W US2007012229 W US 2007012229W WO 2007136874 A3 WO2007136874 A3 WO 2007136874A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- genomic library
- library construction
- compositions
- methods
- single cell
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/686—Polymerase chain reaction [PCR]
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Genetics & Genomics (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Biotechnology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Physics & Mathematics (AREA)
- Microbiology (AREA)
- Biomedical Technology (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Molecular Biology (AREA)
- General Health & Medical Sciences (AREA)
- Analytical Chemistry (AREA)
- Bioinformatics & Computational Biology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Immunology (AREA)
- Plant Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
Abstract
Compositions and methods for amplifying nucleic acid sequences from a single cell are provided. Compositions and methods for constructing a genomic library from a single cell are also provided.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US12/265,184 US7985546B2 (en) | 2006-05-18 | 2008-11-05 | Genomic library construction |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US80134006P | 2006-05-18 | 2006-05-18 | |
US60/801,340 | 2006-05-18 |
Related Child Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
US12/265,184 Continuation US7985546B2 (en) | 2006-05-18 | 2008-11-05 | Genomic library construction |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2007136874A2 WO2007136874A2 (en) | 2007-11-29 |
WO2007136874A3 true WO2007136874A3 (en) | 2008-11-27 |
Family
ID=38723917
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2007/012229 WO2007136874A2 (en) | 2006-05-18 | 2007-05-18 | Genomic library construction |
Country Status (2)
Country | Link |
---|---|
US (1) | US7985546B2 (en) |
WO (1) | WO2007136874A2 (en) |
Families Citing this family (51)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US9315857B2 (en) | 2009-12-15 | 2016-04-19 | Cellular Research, Inc. | Digital counting of individual molecules by stochastic attachment of diverse label-tags |
US8835358B2 (en) | 2009-12-15 | 2014-09-16 | Cellular Research, Inc. | Digital counting of individual molecules by stochastic attachment of diverse labels |
CN103649335B (en) * | 2011-05-04 | 2015-11-25 | Htg分子诊断有限公司 | Quantitative nucleic acid enzyme protection measures the improvement of (QNPA) and order-checking (QNPS) |
JP6375230B2 (en) | 2012-02-27 | 2018-08-15 | セルラー リサーチ, インコーポレイテッド | Compositions and kits for molecular counting |
ES2776673T3 (en) | 2012-02-27 | 2020-07-31 | Univ North Carolina Chapel Hill | Methods and uses for molecular tags |
EP2943579B1 (en) | 2013-01-10 | 2018-09-12 | Dharmacon, Inc. | Libraries and methods for generating molecules |
CN105121661B (en) | 2013-02-01 | 2018-06-08 | 加利福尼亚大学董事会 | The method of phase is determined for genome assembling and haplotype |
US9411930B2 (en) | 2013-02-01 | 2016-08-09 | The Regents Of The University Of California | Methods for genome assembly and haplotype phasing |
KR20230074639A (en) | 2013-08-28 | 2023-05-30 | 벡톤 디킨슨 앤드 컴퍼니 | Massively parallel single cell analysis |
US9582877B2 (en) | 2013-10-07 | 2017-02-28 | Cellular Research, Inc. | Methods and systems for digitally counting features on arrays |
US10526641B2 (en) | 2014-08-01 | 2020-01-07 | Dovetail Genomics, Llc | Tagging nucleic acids for sequence assembly |
US20170283854A1 (en) * | 2014-09-05 | 2017-10-05 | University Of Florida Research Foundation, Inc. | Multiplexed pcr assay for high throughput genotyping |
NZ734854A (en) | 2015-02-17 | 2022-11-25 | Dovetail Genomics Llc | Nucleic acid sequence assembly |
EP3259371B1 (en) | 2015-02-19 | 2020-09-02 | Becton, Dickinson and Company | High-throughput single-cell analysis combining proteomic and genomic information |
WO2016138496A1 (en) | 2015-02-27 | 2016-09-01 | Cellular Research, Inc. | Spatially addressable molecular barcoding |
WO2016154540A1 (en) | 2015-03-26 | 2016-09-29 | Dovetail Genomics Llc | Physical linkage preservation in dna storage |
US11535882B2 (en) | 2015-03-30 | 2022-12-27 | Becton, Dickinson And Company | Methods and compositions for combinatorial barcoding |
CN107580632B (en) | 2015-04-23 | 2021-12-28 | 贝克顿迪金森公司 | Methods and compositions for whole transcriptome amplification |
WO2016196229A1 (en) | 2015-06-01 | 2016-12-08 | Cellular Research, Inc. | Methods for rna quantification |
JP6940484B2 (en) | 2015-09-11 | 2021-09-29 | セルラー リサーチ, インコーポレイテッド | Methods and compositions for library normalization |
SG11201803289VA (en) | 2015-10-19 | 2018-05-30 | Dovetail Genomics Llc | Methods for genome assembly, haplotype phasing, and target independent nucleic acid detection |
US10975417B2 (en) | 2016-02-23 | 2021-04-13 | Dovetail Genomics, Llc | Generation of phased read-sets for genome assembly and haplotype phasing |
JP7129343B2 (en) | 2016-05-02 | 2022-09-01 | ベクトン・ディキンソン・アンド・カンパニー | Accurate molecular barcoding |
DK3455356T3 (en) | 2016-05-13 | 2021-11-01 | Dovetail Genomics Llc | RECOVERY OF LONG-TERM BINDING INFORMATION FROM PRESERVED SAMPLES |
US10301677B2 (en) | 2016-05-25 | 2019-05-28 | Cellular Research, Inc. | Normalization of nucleic acid libraries |
CN109074430B (en) | 2016-05-26 | 2022-03-29 | 贝克顿迪金森公司 | Molecular marker counting adjustment method |
US10640763B2 (en) | 2016-05-31 | 2020-05-05 | Cellular Research, Inc. | Molecular indexing of internal sequences |
US10202641B2 (en) | 2016-05-31 | 2019-02-12 | Cellular Research, Inc. | Error correction in amplification of samples |
KR102363716B1 (en) | 2016-09-26 | 2022-02-18 | 셀룰러 리서치, 인크. | Determination of protein expression using reagents having barcoded oligonucleotide sequences |
CN117056774A (en) | 2016-11-08 | 2023-11-14 | 贝克顿迪金森公司 | Methods for cell marker classification |
CN109952612B (en) | 2016-11-08 | 2023-12-01 | 贝克顿迪金森公司 | Method for classifying expression profiles |
ES2961580T3 (en) | 2017-01-13 | 2024-03-12 | Cellular Res Inc | Hydrophilic coating of fluid channels |
US11319583B2 (en) | 2017-02-01 | 2022-05-03 | Becton, Dickinson And Company | Selective amplification using blocking oligonucleotides |
EP4345172A2 (en) | 2017-06-05 | 2024-04-03 | Becton, Dickinson and Company | Sample indexing for single cells |
CN109811045B (en) * | 2017-11-22 | 2022-05-31 | 深圳华大智造科技股份有限公司 | Construction method and application of high-throughput single-cell full-length transcriptome sequencing library |
WO2019126209A1 (en) | 2017-12-19 | 2019-06-27 | Cellular Research, Inc. | Particles associated with oligonucleotides |
US11365409B2 (en) | 2018-05-03 | 2022-06-21 | Becton, Dickinson And Company | Molecular barcoding on opposite transcript ends |
CN112272710A (en) | 2018-05-03 | 2021-01-26 | 贝克顿迪金森公司 | High throughput omics sample analysis |
EP3861134A1 (en) | 2018-10-01 | 2021-08-11 | Becton, Dickinson and Company | Determining 5' transcript sequences |
US11932849B2 (en) | 2018-11-08 | 2024-03-19 | Becton, Dickinson And Company | Whole transcriptome analysis of single cells using random priming |
WO2020123384A1 (en) | 2018-12-13 | 2020-06-18 | Cellular Research, Inc. | Selective extension in single cell whole transcriptome analysis |
WO2020150356A1 (en) | 2019-01-16 | 2020-07-23 | Becton, Dickinson And Company | Polymerase chain reaction normalization through primer titration |
EP3914728B1 (en) | 2019-01-23 | 2023-04-05 | Becton, Dickinson and Company | Oligonucleotides associated with antibodies |
US11965208B2 (en) | 2019-04-19 | 2024-04-23 | Becton, Dickinson And Company | Methods of associating phenotypical data and single cell sequencing data |
WO2021016239A1 (en) | 2019-07-22 | 2021-01-28 | Becton, Dickinson And Company | Single cell chromatin immunoprecipitation sequencing assay |
CN114729350A (en) | 2019-11-08 | 2022-07-08 | 贝克顿迪金森公司 | Obtaining full-length V (D) J information for immunohistorian sequencing using random priming |
WO2021146207A1 (en) | 2020-01-13 | 2021-07-22 | Becton, Dickinson And Company | Methods and compositions for quantitation of proteins and rna |
WO2021231779A1 (en) | 2020-05-14 | 2021-11-18 | Becton, Dickinson And Company | Primers for immune repertoire profiling |
US11932901B2 (en) | 2020-07-13 | 2024-03-19 | Becton, Dickinson And Company | Target enrichment using nucleic acid probes for scRNAseq |
US11739443B2 (en) | 2020-11-20 | 2023-08-29 | Becton, Dickinson And Company | Profiling of highly expressed and lowly expressed proteins |
CN113066533B (en) * | 2021-04-02 | 2023-04-04 | 欧蒙医学诊断(中国)有限公司 | mNGS pathogen data analysis method |
Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5811239A (en) * | 1996-05-13 | 1998-09-22 | Frayne Consultants | Method for single base-pair DNA sequence variation detection |
US6617137B2 (en) * | 2001-10-15 | 2003-09-09 | Molecular Staging Inc. | Method of amplifying whole genomes without subjecting the genome to denaturing conditions |
Family Cites Families (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
DK2374900T3 (en) * | 2003-03-07 | 2016-10-17 | Rubicon Genomics Inc | Polynucleotides for amplification and analysis of the total genomic and total transcription libraries generated by a DNA polymerization |
US7387876B2 (en) * | 2004-02-27 | 2008-06-17 | President And Fellows Of Harvard College | Amplification of trace amounts of nucleic acids |
ES2292270B1 (en) * | 2004-04-14 | 2009-02-16 | Oryzon Genomics, S.A. | PROCEDURE FOR SELECTLY DETECTING NUCLEIC ACIDS WITH ATIPIC STRUCTURES CONVERTIBLE IN MUESCAS. |
-
2007
- 2007-05-18 WO PCT/US2007/012229 patent/WO2007136874A2/en active Application Filing
-
2008
- 2008-11-05 US US12/265,184 patent/US7985546B2/en not_active Expired - Fee Related
Patent Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5811239A (en) * | 1996-05-13 | 1998-09-22 | Frayne Consultants | Method for single base-pair DNA sequence variation detection |
US6617137B2 (en) * | 2001-10-15 | 2003-09-09 | Molecular Staging Inc. | Method of amplifying whole genomes without subjecting the genome to denaturing conditions |
Also Published As
Publication number | Publication date |
---|---|
US20090137407A1 (en) | 2009-05-28 |
US7985546B2 (en) | 2011-07-26 |
WO2007136874A2 (en) | 2007-11-29 |
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