WO2011049669A3 - Genetic fingerprinting and identification method - Google Patents
Genetic fingerprinting and identification method Download PDFInfo
- Publication number
- WO2011049669A3 WO2011049669A3 PCT/US2010/046004 US2010046004W WO2011049669A3 WO 2011049669 A3 WO2011049669 A3 WO 2011049669A3 US 2010046004 W US2010046004 W US 2010046004W WO 2011049669 A3 WO2011049669 A3 WO 2011049669A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- organism
- sample
- nucleic acid
- labeled
- mix
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/686—Polymerase chain reaction [PCR]
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Analytical Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Physics & Mathematics (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Molecular Biology (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- General Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Theoretical Computer Science (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Medical Informatics (AREA)
- Botany (AREA)
- Mycology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
Priority Applications (6)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
BR112012003640A BR112012003640A2 (en) | 2009-08-21 | 2010-08-19 | organism identification method in an isolated polynucleotide sample and primer comprising isolated polynucleotide |
JP2012525685A JP2013502222A (en) | 2009-08-21 | 2010-08-19 | Gene fingerprinting and identification method |
EP10813092A EP2467501A2 (en) | 2009-08-21 | 2010-08-19 | Genetic fingerprinting and identification method |
AU2010308516A AU2010308516A1 (en) | 2009-08-21 | 2010-08-19 | Genetic fingerprinting and identification method |
MX2012002101A MX2012002101A (en) | 2009-08-21 | 2010-08-19 | Genetic fingerprinting and identification method. |
CA2769825A CA2769825A1 (en) | 2009-08-21 | 2010-08-19 | Genetic fingerprinting and identification method |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US23599909P | 2009-08-21 | 2009-08-21 | |
US61/235,999 | 2009-08-21 |
Publications (3)
Publication Number | Publication Date |
---|---|
WO2011049669A2 WO2011049669A2 (en) | 2011-04-28 |
WO2011049669A9 WO2011049669A9 (en) | 2011-06-16 |
WO2011049669A3 true WO2011049669A3 (en) | 2011-08-04 |
Family
ID=43605665
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/US2010/046004 WO2011049669A2 (en) | 2009-08-21 | 2010-08-19 | Genetic fingerprinting and identification method |
Country Status (8)
Country | Link |
---|---|
US (2) | US8481267B2 (en) |
EP (1) | EP2467501A2 (en) |
JP (1) | JP2013502222A (en) |
AU (1) | AU2010308516A1 (en) |
BR (1) | BR112012003640A2 (en) |
CA (1) | CA2769825A1 (en) |
MX (1) | MX2012002101A (en) |
WO (1) | WO2011049669A2 (en) |
Family Cites Families (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US4683202A (en) * | 1985-03-28 | 1987-07-28 | Cetus Corporation | Process for amplifying nucleic acid sequences |
US4683195A (en) * | 1986-01-30 | 1987-07-28 | Cetus Corporation | Process for amplifying, detecting, and/or-cloning nucleic acid sequences |
US4879214A (en) * | 1988-11-15 | 1989-11-07 | E. I. Du Pont De Nemours And Company | Differentiation of nucleic acid segments on the basis of nucleotide differences |
US5126239A (en) * | 1990-03-14 | 1992-06-30 | E. I. Du Pont De Nemours And Company | Process for detecting polymorphisms on the basis of nucleotide differences |
EP0721987A1 (en) * | 1995-01-16 | 1996-07-17 | Keygene N.V. | Amplification of simple sequence repeats |
US6263286B1 (en) * | 1998-08-13 | 2001-07-17 | U.S. Genomics, Inc. | Methods of analyzing polymers using a spatial network of fluorophores and fluorescence resonance energy transfer |
-
2010
- 2010-08-18 US US12/858,508 patent/US8481267B2/en not_active Expired - Fee Related
- 2010-08-19 EP EP10813092A patent/EP2467501A2/en not_active Withdrawn
- 2010-08-19 JP JP2012525685A patent/JP2013502222A/en active Pending
- 2010-08-19 MX MX2012002101A patent/MX2012002101A/en active IP Right Grant
- 2010-08-19 WO PCT/US2010/046004 patent/WO2011049669A2/en active Application Filing
- 2010-08-19 AU AU2010308516A patent/AU2010308516A1/en not_active Abandoned
- 2010-08-19 BR BR112012003640A patent/BR112012003640A2/en not_active IP Right Cessation
- 2010-08-19 CA CA2769825A patent/CA2769825A1/en not_active Abandoned
-
2013
- 2013-06-11 US US13/914,987 patent/US8697852B2/en not_active Expired - Fee Related
Non-Patent Citations (9)
Title |
---|
BENECKE M: "Random amplified polymorphic DNA (RAPD) typing of necrophageous insects (Diptera, Coleoptera) in criminal forensic studies: validation and use in practice.", FORENSIC SCIENCE INTERNATIONAL 21 DEC 1998 LNKD- PUBMED:9924784, vol. 98, no. 3, 21 December 1998 (1998-12-21), pages 157 - 168, XP002632236, ISSN: 0379-0738 * |
HEALY M ET AL: "Use of the Diversi Lab System for species and strain differentiation of Fusarium species isolates.", JOURNAL OF CLINICAL MICROBIOLOGY OCT 2005 LNKD- PUBMED:16207996, vol. 43, no. 10, October 2005 (2005-10-01), pages 5278 - 5280, XP002632237, ISSN: 0095-1137 * |
HEALY MIMI ET AL: "Microbial DNA typing by automated repetitive-sequence-based PCR.", JOURNAL OF CLINICAL MICROBIOLOGY JAN 2005 LNKD- PUBMED:15634972, vol. 43, no. 1, January 2005 (2005-01-01), pages 199 - 207, XP002632235, ISSN: 0095-1137 * |
HILTON A C ET AL: "Optimization of RAPD for fingerprinting Salmonella.", LETTERS IN APPLIED MICROBIOLOGY APR 1997 LNKD- PUBMED:9134770, vol. 24, no. 4, April 1997 (1997-04-01), pages 243 - 248, XP002632241, ISSN: 0266-8254 * |
HILTON A C ET AL: "Random amplification of polymorphic DNA (RAPD) of Salmonella: strain differentiation and characterization of amplified sequences.", THE JOURNAL OF APPLIED BACTERIOLOGY DEC 1996 LNKD- PUBMED:8972084, vol. 81, no. 6, December 1996 (1996-12-01), pages 575 - 584, XP002632242, ISSN: 0021-8847 * |
KUSKE C R ET AL: "Small-scale DNA sample preparation method for field PCR detection of microbial cells and spores in soil", APPLIED AND ENVIRONMENTAL MICROBIOLOGY, AMERICAN SOCIETY FOR MICROBIOLOGY, US, vol. 64, no. 7, 1 July 1998 (1998-07-01), pages 2463 - 2472, XP002226433, ISSN: 0099-2240 * |
POUNDER JUNE I ET AL: "Clinical evaluation of repetitive sequence-based polymerase chain reaction using the Diversi-Lab System for strain typing of vancomycin-resistant enterococci.", DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE MAR 2006 LNKD- PUBMED:16423495, vol. 54, no. 3, March 2006 (2006-03-01), pages 183 - 187, XP002632239, ISSN: 0732-8893 * |
POUNDER JUNE I ET AL: "Repetitive-sequence-PCR-based DNA fingerprinting using the Diversilab system for identification of commonly encountered dermatophytes.", JOURNAL OF CLINICAL MICROBIOLOGY MAY 2005 LNKD- PUBMED:15872233, vol. 43, no. 5, May 2005 (2005-05-01), pages 2141 - 2147, XP002632238, ISSN: 0095-1137 * |
SHUTT CHERYL K ET AL: "Clinical evaluation of the DiversiLab microbial typing system using repetitive-sequence-based PCR for characterization of Staphylococcus aureus strains.", JOURNAL OF CLINICAL MICROBIOLOGY MAR 2005 LNKD- PUBMED:15750081, vol. 43, no. 3, March 2005 (2005-03-01), pages 1187 - 1192, XP002632240, ISSN: 0095-1137 * |
Also Published As
Publication number | Publication date |
---|---|
JP2013502222A (en) | 2013-01-24 |
US20110045478A1 (en) | 2011-02-24 |
BR112012003640A2 (en) | 2017-07-18 |
US8697852B2 (en) | 2014-04-15 |
WO2011049669A9 (en) | 2011-06-16 |
WO2011049669A2 (en) | 2011-04-28 |
AU2010308516A1 (en) | 2012-02-02 |
US8481267B2 (en) | 2013-07-09 |
CA2769825A1 (en) | 2011-04-28 |
EP2467501A2 (en) | 2012-06-27 |
US20130274458A1 (en) | 2013-10-17 |
MX2012002101A (en) | 2012-04-11 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
WO2008011565A3 (en) | Method for identifying novel genes | |
AU2014204426B2 (en) | Integrated nucleic acid analysis | |
WO2007123744A3 (en) | Systems and devices for sequence by synthesis analysis | |
WO2012162267A3 (en) | Nucleic acid encoding reactions | |
WO2006033020A3 (en) | Methods and apparatus for the detection and validation of micrornas | |
WO2005089508A3 (en) | Dna sequence detection by limited primer extension | |
WO2010026488A3 (en) | Methods and kits for nucleic acid sequencing | |
WO2008115185A3 (en) | Use of microarrays for genomic representation selection | |
WO2010068884A3 (en) | Methods and systems for direct sequencing of single dna molecules | |
WO2004039953A3 (en) | Array oligomer synthesis and use. | |
UA92720C2 (en) | Method for simulteneous identification of mycobacteria of tuberculosis complex and identification of mutations of dna of mycobacteria, leading to resistance of microorganisms towards rifampicin and isoniazid, on biological microchips, set of primers, biochip, and set of oligonucleotide probes, used in a method | |
HK1130844A1 (en) | Methods and devices for detection and identification of encoded beads and biological molecules | |
AU2010315303A8 (en) | Quantitative Nuclease Protection Sequencing (qNPS) | |
NZ610129A (en) | Systems and methods for automated reusable parallel biological reactions | |
WO2008051530A3 (en) | Polymerase enzymes and reagents for enhanced nucleic acid sequencing | |
EP2044191A4 (en) | Systems and methods for monitoring the amplification and dissociation behavior of dna molecules | |
WO2007041342A3 (en) | Labeled nucleotide analogs and uses therefor | |
WO2005113822A3 (en) | Dna profiling and snp detection utilizing microarrays | |
WO2008122002A3 (en) | Organism identification panel | |
WO2011140187A3 (en) | Detecting chromosomal rearrangement | |
WO2009116863A3 (en) | Expression-linked gene discovery | |
WO2010075414A3 (en) | Method for detection of xmrv | |
AU2009355009A8 (en) | THD primer target detection | |
WO2004027024A3 (en) | Isolation of genetic molecules from a complex biological construct for use in genetic expression analysis | |
ATE493517T1 (en) | CONTROL GENES FOR NORMALIZING GENE EXPRESSION ANALYSIS DATA |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
121 | Ep: the epo has been informed by wipo that ep was designated in this application |
Ref document number: 10813092 Country of ref document: EP Kind code of ref document: A1 |
|
WWE | Wipo information: entry into national phase |
Ref document number: 2010308516 Country of ref document: AU |
|
WWE | Wipo information: entry into national phase |
Ref document number: 2769825 Country of ref document: CA |
|
ENP | Entry into the national phase |
Ref document number: 2010308516 Country of ref document: AU Date of ref document: 20100819 Kind code of ref document: A |
|
WWE | Wipo information: entry into national phase |
Ref document number: MX/A/2012/002101 Country of ref document: MX |
|
WWE | Wipo information: entry into national phase |
Ref document number: 2012525685 Country of ref document: JP |
|
NENP | Non-entry into the national phase |
Ref country code: DE |
|
WWE | Wipo information: entry into national phase |
Ref document number: 2010813092 Country of ref document: EP |
|
REG | Reference to national code |
Ref country code: BR Ref legal event code: B01A Ref document number: 112012003640 Country of ref document: BR |
|
ENP | Entry into the national phase |
Ref document number: 112012003640 Country of ref document: BR Kind code of ref document: A2 Effective date: 20120217 |